Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  14  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4856629--4856677
3
17.3
3
76
19
52
28
2
0
69
1.00
4856633--4856671
11
3.5
11
92
0
69
28
2
0
69
1.02
4856629--4856670
19
2.2
19
87
8
59
26
2
0
71
0.98
4867940--4867998
8
6.7
9
76
16
61
62
1
0
35
1.05
4867956--4867987
17
1.9
17
93
6
57
65
0
0
34
0.93
4867956--4867998
18
2.4
18
85
11
54
65
0
0
34
0.93
4868331--4868449
28
4.4
28
70
10
86
36
2
1
58
1.21
4869485--4869574
39
2.2
41
88
3
130
51
6
3
38
1.45
4870150--4870183
12
2.9
12
91
4
52
0
23
0
76
0.79
4870170--4870222
22
2.5
21
76
11
54
0
32
5
62
1.19
4870275--4870306
16
1.9
17
93
6
57
43
0
0
56
0.99
4871543--4871577
17
2.0
18
88
5
54
68
0
0
31
0.90
4871546--4871587
14
3.3
13
80
12
52
73
2
0
23
0.94
4871650--4871683
7
4.9
7
85
0
50
47
23
0
29
1.52
4871643--4871680
14
2.5
15
87
8
51
50
23
0
26
1.50
4872728--4872792
30
2.2
29
86
8
87
64
4
3
27
1.28
4879134--4879245
58
1.9
58
85
3
154
25
7
12
54
1.63
4879723--4879787
32
2.0
33
87
6
96
50
7
16
24
1.71
4879677--4879843
91
1.8
91
81
12
209
49
13
13
24
1.77
4885966--4885998
16
2.1
16
100
0
66
39
18
12
30
1.87
4893463--4893490
2
14.0
2
100
0
56
50
0
0
50
1.00
4902012--4902132
29
3.7
29
69
24
89
45
14
13
27
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4901981--4902122
71
2.0
71
100
0
284
43
15
14
26
1.85
4905514--4905538
1
25.0
1
100
0
50
0
0
0
100
0.00
4929077--4929126
21
2.3
23
77
16
63
38
0
2
60
1.09
4945382--4945425
9
4.8
10
78
15
51
40
4
0
54
1.21
4945382--4945426
18
2.5
19
89
7
67
40
4
0
55
1.20
4945617--4945670
12
4.5
12
79
9
65
29
3
0
66
1.09
4945814--4945849
15
2.5
14
90
4
54
36
0
0
63
0.94
4945804--4945924
22
5.7
22
71
22
98
32
3
4
60
1.32
4945887--4945999
13
9.5
13
65
24
63
36
3
5
54
1.40
4945887--4945956
35
2.0
36
88
8
108
35
4
5
54
1.44
4945919--4945999
23
3.4
22
77
17
74
37
3
4
54
1.40
4945881--4946008
58
2.2
56
87
9
179
35
3
4
56
1.36
4946055--4946131
23
3.3
23
72
18
68
31
3
2
62
1.27
4946154--4946194
21
2.0
20
85
4
55
34
2
7
56
1.40
4946241--4946394
83
1.9
79
81
13
183
37
4
3
55
1.37
4946295--4946401
25
4.5
25
74
13
77
35
4
2
57
1.34
4948339--4948648
94
3.3
90
77
9
304
28
20
28
22
1.98
4948383--4948685
47
6.4
47
75
11
230
28
20
29
22
1.98
4953055--4953129
21
3.5
21
87
3
96
40
26
20
13
1.89
4953055--4953139
21
3.9
22
83
7
93
38
25
20
15
1.91
4953846--4953882
5
7.2
5
96
3
65
56
0
0
43
0.99
4953907--4953947
3
15.0
3
80
19
54
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4953905--4953949
8
5.6
8
100
0
90
62
0
0
37
0.96
4956867--4956924
28
2.1
28
100
0
116
17
6
13
62
1.52
4962631--4962719
41
2.1
41
85
2
124
28
15
26
29
1.96
4963617--4963653
20
1.9
19
89
10
58
35
5
0
59
1.20
4963926--4964005
29
2.7
28
75
9
79
33
6
2
57
1.37
4963926--4964005
10
8.2
10
71
10
58
33
6
2
57
1.37
4963989--4964057
30
2.3
30
82
5
77
27
5
1
65
1.24
4964000--4964061
18
3.8
17
70
25
62
25
8
0
66
1.19
4964077--4964141
27
2.3
28
79
10
80
38
0
3
58
1.14
4964111--4964144
17
2.1
16
88
5
50
35
0
5
58
1.22
4967033--4967062
15
2.0
15
93
0
51
56
0
40
3
1.16
4968614--4968646
2
16.5
2
100
0
66
51
0
0
48
1.00
4973335--4973409
39
1.9
39
100
0
150
42
12
24
21
1.86
4973374--4973508
50
2.7
50
88
5
200
40
14
22
23
1.90
4973492--4973609
31
3.8
31
93
0
200
27
21
27
23
1.99
4973729--4973842
42
2.7
43
86
4
151
30
15
25
28
1.96
4977469--4977576
44
2.4
44
87
3
144
29
23
13
33
1.93
4985807--4985840
14
2.5
14
90
4
52
32
2
0
64
1.08
4987468--4987509
19
2.2
19
83
8
50
52
4
2
40
1.35
4993968--4993997
14
2.1
14
100
0
60
36
6
6
50
1.55
4997329--4997365
19
1.9
19
94
0
65
51
0
13
35
1.41
4998106--4998177
28
2.5
29
86
4
101
20
12
16
50
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5010856--5010919
32
2.0
32
96
0
119
45
14
9
31
1.76
5014388--5014461
36
2.1
36
82
10
89
58
6
6
28
1.50
5017157--5017300
77
1.9
77
88
2
218
48
15
18
16
1.81
5021495--5021617
39
3.2
39
67
17
110
65
12
8
14
1.47
5027877--5027949
31
2.4
30
84
9
85
39
10
12
36
1.78
5030395--5030427
17
2.1
16
88
11
50
30
0
0
69
0.88
5030474--5030532
21
2.8
22
85
7
70
23
0
6
69
1.12
5030503--5030562
26
2.4
24
83
8
75
28
0
3
68
1.05
5031010--5031055
20
2.3
21
81
7
60
30
4
4
60
1.35
5031027--5031087
21
2.9
21
80
7
61
36
3
1
59
1.24
5031164--5031233
28
2.7
26
79
14
72
34
4
2
58
1.32
5031343--5031381
19
2.1
19
95
0
69
35
2
0
61
1.10
5034182--5034282
39
2.5
39
87
3
130
25
22
29
21
1.99
5034139--5034322
40
4.6
39
78
6
149
23
23
29
22
1.99
5037012--5037100
22
4.1
21
72
12
74
52
2
6
38
1.40
5037050--5037087
20
1.9
20
88
0
58
55
2
7
34
1.43
5037012--5037111
21
4.8
20
74
18
71
53
2
6
39
1.37
5037083--5037111
2
15.0
2
92
7
51
51
0
0
48
1.00
5037878--5037907
15
2.1
15
93
6
53
56
0
43
0
0.99
5038659--5038703
23
2.0
23
86
8
65
15
4
42
37
1.67
5039198--5039222
13
1.9
13
100
0
50
64
4
16
16
1.44
5039357--5039676
71
4.5
71
83
4
329
31
20
15
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5039543--5040458
160
5.8
160
81
10
1013
33
20
15
30
1.94
5039728--5040694
231
4.2
231
97
0
1754
33
20
15
30
1.94
5039888--5040067
71
2.5
71
93
0
306
30
21
15
32
1.94
5039473--5040227
391
1.9
391
95
0
1357
32
20
15
30
1.94
5040125--5040298
71
2.5
71
92
0
285
31
21
13
33
1.92
5039498--5040458
391
2.5
381
88
6
1317
33
20
15
30
1.94
5040325--5040518
71
2.7
71
91
0
307
31
23
14
29
1.94
5040350--5040521
71
2.4
71
95
0
308
30
22
15
30
1.95
5040396--5040708
160
2.0
158
89
1
482
33
20
16
29
1.94
5040556--5040694
71
2.0
71
88
0
206
30
21
17
30
1.96
5040587--5040954
127
2.9
126
91
2
587
32
21
17
28
1.96
5040839--5041086
72
3.4
72
90
2
383
29
24
17
29
1.97
5065940--5066000
24
2.5
24
80
15
72
54
3
3
39
1.33
5066725--5066754
15
2.1
15
93
6
53
56
0
43
0
0.99
5067509--5067553
23
2.0
23
86
8
65
15
4
42
37
1.67
5075252--5075318
31
2.2
31
86
5
91
41
2
2
52
1.32
5079724--5080040
131
2.4
130
84
6
360
34
17
17
30
1.93
5080698--5080738
2
20.5
2
100
0
82
51
0
0
48
1.00
5081887--5081937
22
2.1
26
82
17
65
0
13
9
76
1.02
5082635--5082772
43
3.2
43
66
13
129
21
23
22
32
1.98
5082505--5082947
87
5.1
87
87
2
611
23
24
19
32
1.98
5082595--5082903
44
7.0
44
62
14
127
24
25
19
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5083037--5083264
64
3.6
64
90
1
359
38
12
16
32
1.86
5091703--5092033
131
2.5
130
82
6
386
36
17
16
29
1.92
5092714--5092748
2
17.5
2
100
0
70
51
0
0
48
1.00
5097312--5097337
5
5.2
5
100
0
52
19
0
0
80
0.71
5097613--5097651
15
2.6
15
83
0
51
76
20
0
2
0.90
5098864--5098916
5
10.0
5
80
11
61
41
0
1
56
1.10
5098861--5098917
8
6.6
9
74
22
59
43
0
1
54
1.10
5098862--5098917
12
4.5
12
81
16
69
42
0
1
55
1.10
5100233--5100271
18
2.1
19
86
13
55
38
2
10
48
1.51
5100510--5100644
39
3.4
39
74
6
112
23
20
28
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345