genome.fa.s12.2.7.7.80.10.50.1000.313.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  313  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93978456--93978498	21	2.0	21	90	0	68	39	0	2	58	1.11
93978865--93978889	9	2.8	9	100	0	50	80	12	0	8	0.92
93980413--93980471	28	2.2	27	85	11	77	50	3	11	33	1.56
93985391--93985464	24	3.1	24	80	0	76	41	2	39	16	1.62
93987909--93987956	24	2.1	23	88	11	73	52	18	16	12	1.75
93990142--93990250	33	3.5	32	68	15	93	54	8	0	37	1.31
93990409--93990443	17	2.1	17	89	5	54	2	20	0	77	0.90
93990411--93990469	23	2.8	20	72	20	57	3	23	0	72	0.99
93990766--93990839	27	2.7	29	78	19	79	59	1	0	39	1.06
93990772--93990842	29	2.4	28	84	13	90	61	1	0	36	1.05
93994845--93994879	7	5.0	7	100	0	70	28	57	14	0	1.38
93995290--93995323	7	4.9	7	100	0	68	11	14	0	73	1.10
93996042--93996070	2	14.5	2	100	0	58	51	0	0	48	1.00
93998072--93998326	40	6.5	40	87	6	335	24	29	24	21	1.99
93998086--93998326	78	3.1	79	90	4	362	24	29	24	21	1.99
94006219--94006396	40	4.5	40	90	3	236	24	28	24	22	1.99
94019730--94019907	40	4.5	40	90	3	236	24	28	24	22	1.99
94025106--94025363	40	6.5	40	93	2	396	24	28	24	22	1.99
94033253--94033430	40	4.5	40	88	4	227	24	28	24	22	1.99
94058443--94058476	17	2.0	17	94	0	59	32	5	0	61	1.20
94059491--94059525	18	2.0	18	88	5	54	71	0	17	11	1.14
94059514--94059552	17	2.4	16	87	8	53	64	0	20	15	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94069394--94069443	21	2.4	21	96	0	91	2	18	4	76	1.04
94071475--94071522	21	2.4	20	86	10	71	50	0	4	45	1.21
94071661--94071701	2	20.5	2	100	0	82	48	0	0	51	1.00
94073340--94073601	46	5.7	46	82	4	287	42	14	23	20	1.88
94073571--94073670	45	2.2	45	96	0	182	35	16	27	22	1.94
94073909--94073941	17	2.0	17	94	5	59	48	0	15	36	1.45
94075250--94075298	25	2.0	25	91	0	80	59	2	14	24	1.46
94076300--94076328	14	2.0	15	93	6	51	27	0	0	72	0.85
94076310--94076352	21	2.0	21	82	8	52	37	0	2	60	1.10
94076749--94076781	5	6.6	5	100	0	66	21	60	0	18	1.36
94078400--94078430	3	10.3	3	92	0	53	64	3	0	32	1.09
94078399--94078428	15	2.0	15	100	0	60	60	6	0	33	1.23
94079073--94079124	23	2.2	23	79	3	59	44	19	9	26	1.81
94079770--94079805	15	2.4	16	82	17	51	61	2	0	36	1.11
94080119--94080174	2	28.0	2	100	0	112	50	0	0	50	1.00
94087821--94087911	41	2.2	40	86	1	112	41	2	5	50	1.37
94093290--94093344	22	2.5	22	85	5	76	23	27	36	12	1.91
94094625--94094661	16	2.2	18	85	9	51	70	0	0	29	0.88
94094814--94094877	25	2.6	25	76	16	69	62	6	9	21	1.47
94097131--94097418	75	3.8	74	81	2	326	34	19	21	23	1.96
94098671--94098803	69	1.9	69	93	3	232	36	17	9	36	1.83
94102833--94102860	13	2.2	13	100	0	56	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94104614--94104650	2	18.5	2	100	0	74	51	0	48	0	1.00
94105038--94105250	75	2.8	75	83	0	273	36	20	20	23	1.95
94106747--94106816	24	3.0	24	91	4	115	35	1	38	24	1.64
94108236--94108340	27	3.9	27	79	7	97	18	23	20	38	1.93
94108284--94108349	27	2.4	27	85	7	89	15	22	21	40	1.90
94108236--94108348	54	2.1	54	83	6	140	16	23	21	38	1.92
94118222--94118250	2	14.5	2	100	0	58	51	0	0	48	1.00
94122411--94122439	15	1.9	15	100	0	58	31	0	0	68	0.89
94124409--94124461	27	2.0	27	88	7	81	43	9	7	39	1.65
94129433--94129595	46	3.9	38	81	18	173	38	16	23	21	1.93
94129472--94129644	46	3.8	46	88	0	238	40	15	23	20	1.91
94132446--94132497	16	3.2	16	76	17	54	40	0	1	57	1.10
94133066--94133091	13	2.0	13	100	0	52	76	0	23	0	0.78
94133419--94133462	23	1.9	24	90	9	74	54	0	20	25	1.45
94141110--94141245	57	2.4	57	80	10	154	57	3	16	22	1.55
94141110--94141260	27	5.4	27	76	12	117	56	4	17	21	1.59
94150700--94150731	5	6.4	5	100	0	64	40	0	0	59	0.97
94151029--94151085	30	2.0	28	83	13	71	38	1	21	38	1.64
94153973--94154027	22	2.5	22	74	11	58	41	18	10	29	1.84
94163305--94163365	17	3.4	17	79	16	61	68	0	1	29	0.99
94163327--94163367	20	2.0	20	85	0	55	63	0	2	34	1.08
94165406--94165443	16	2.4	16	86	4	51	21	15	7	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94167108--94167213	49	2.2	49	86	3	142	26	8	28	36	1.86
94169222--94169247	11	2.4	11	100	0	52	50	11	0	38	1.39
94171596--94171641	2	23.0	2	100	0	92	50	0	0	50	1.00
94171787--94171826	18	2.2	18	86	8	55	60	12	2	25	1.45
94171843--94171897	17	3.2	17	76	20	60	67	0	1	30	1.01
94172023--94172180	3	53.3	3	73	12	96	63	2	3	30	1.25
94172023--94172171	17	9.1	17	69	19	95	62	2	4	30	1.27
94181056--94181169	31	3.7	30	80	5	120	40	5	7	47	1.53
94185591--94185615	6	4.2	6	100	0	50	68	0	16	16	1.22
94185776--94185809	16	2.1	16	88	0	50	47	0	8	44	1.34
94186222--94186284	27	2.3	27	91	0	99	19	36	19	25	1.94
94186336--94186388	27	2.0	27	82	14	65	22	35	16	24	1.95
94189299--94189406	56	1.9	56	90	0	171	22	11	11	55	1.66
94189564--94189588	13	1.9	13	100	0	50	36	0	8	56	1.29
94193039--94193227	29	6.5	29	90	5	274	26	25	13	33	1.93
94200853--94201012	29	5.5	30	88	8	222	27	25	13	33	1.94
94200853--94201012	59	2.8	57	89	4	223	27	25	13	33	1.94
94205052--94205238	70	2.7	70	85	3	234	32	4	29	32	1.79
94205101--94205250	35	4.3	35	83	0	192	29	4	33	33	1.76
94205063--94205292	70	3.3	70	81	4	207	29	3	31	34	1.76
94206002--94206053	20	2.6	20	90	0	86	15	28	32	23	1.95
94207650--94207724	21	3.5	20	78	18	87	40	13	4	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94207636--94207724	45	2.0	45	100	0	178	42	11	4	41	1.61
94207636--94207708	24	3.2	24	77	18	100	43	9	4	42	1.56
94214919--94214970	22	2.4	22	80	0	59	42	17	23	17	1.89
94214949--94215032	25	3.4	24	88	6	114	35	20	26	17	1.95
94226432--94226534	29	3.6	27	81	5	98	29	33	16	21	1.95
94229643--94229832	6	30.8	6	74	15	147	48	14	18	18	1.81
94229643--94229785	37	3.9	37	72	10	139	49	14	18	17	1.79
94229655--94229832	25	7.4	25	78	12	194	47	14	19	18	1.82
94229660--94229832	68	2.5	68	91	5	271	47	15	19	18	1.83
94229728--94229832	31	3.2	31	73	23	115	45	15	20	19	1.85
94229691--94229816	37	3.6	37	73	20	133	47	15	18	19	1.82
94229959--94230022	27	2.4	26	80	12	76	42	18	18	20	1.90
94230170--94230234	22	3.0	22	75	8	69	30	21	26	21	1.98
94230748--94230811	27	2.4	27	86	0	92	31	18	14	35	1.91
94230793--94231077	27	10.6	27	80	6	163	31	8	20	39	1.83
94230845--94231077	81	2.9	81	79	5	215	30	8	21	39	1.83
94230828--94231077	54	4.7	53	78	3	191	30	8	20	40	1.83
94235649--94235686	20	1.9	20	88	0	58	52	7	5	34	1.53
94249250--94249275	12	2.2	12	100	0	52	61	15	7	15	1.55
94254421--94254482	32	1.9	32	87	6	90	24	17	12	45	1.84
94259365--94259596	79	3.0	77	80	8	251	49	16	18	15	1.80
94259637--94259665	14	2.1	14	100	0	58	27	27	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94259965--94260053	43	2.1	43	89	4	135	50	13	6	29	1.67
94260075--94260114	19	2.2	18	90	4	62	42	17	2	37	1.63
94264652--94264744	43	2.2	43	90	3	143	51	15	6	26	1.67
94264766--94264805	19	2.2	18	90	4	62	42	17	2	37	1.63
94272704--94272750	6	7.8	6	90	0	58	34	40	17	8	1.79
94276135--94276172	14	2.8	14	80	4	51	44	7	0	47	1.32
94276730--94276779	25	2.0	25	100	0	100	32	24	0	44	1.54
94279805--94280170	75	4.9	75	85	1	428	25	22	22	28	1.99
94279805--94280048	35	6.5	40	69	17	121	24	23	23	28	1.99
94279919--94280170	35	6.7	38	68	18	161	27	20	21	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345