Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  276  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82259171--82259198
14
2.0
14
100
0
56
35
7
7
50
1.57
82259820--82260008
49
3.8
49
80
2
234
26
25
20
26
1.99
82259826--82260013
100
1.9
100
94
0
331
27
26
21
25
1.99
82263733--82263878
42
3.4
41
77
8
141
26
15
25
32
1.95
82263733--82263900
84
2.0
86
81
6
200
25
15
25
33
1.95
82266188--82266324
23
6.0
22
76
9
89
27
21
16
35
1.95
82266198--82266334
46
2.9
46
84
7
161
28
21
15
34
1.94
82266244--82266324
22
3.6
23
82
11
89
29
22
16
32
1.95
82273516--82273560
2
22.5
2
95
0
72
0
4
44
51
1.21
82283329--82283396
29
2.4
28
87
7
93
29
26
13
30
1.94
82288900--82288925
12
2.2
12
100
0
52
30
0
38
30
1.58
82290590--82290818
6
37.2
6
74
16
139
51
16
15
17
1.77
82290590--82290818
19
12.4
18
70
16
139
51
16
15
17
1.77
82290604--82290728
37
3.4
37
92
0
187
52
16
14
16
1.74
82290690--82290750
25
2.4
25
83
0
77
54
14
13
18
1.72
82290715--82290797
37
2.2
37
82
0
103
48
18
16
16
1.82
82290740--82290815
25
3.1
25
84
5
93
50
18
15
15
1.79
82290752--82290818
25
2.7
25
88
0
98
49
16
17
16
1.80
82290656--82290819
62
2.6
62
89
0
247
51
16
15
17
1.77
82290938--82290997
27
2.3
26
82
2
66
36
20
21
21
1.95
82291323--82291381
27
2.2
28
78
9
68
28
18
23
28
1.98
82291332--82291583
27
9.3
27
82
3
251
25
19
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82291336--82291575
81
3.0
80
85
4
304
24
20
18
36
1.95
82291565--82291775
27
7.8
27
76
9
108
31
8
21
38
1.84
82291565--82291826
81
3.2
80
82
1
218
30
8
22
38
1.84
82291673--82292095
54
7.8
54
90
1
632
30
9
20
39
1.85
82291674--82292095
27
15.6
27
86
0
574
30
9
20
39
1.85
82301870--82301896
12
2.2
12
100
0
54
29
22
0
48
1.51
82305080--82305165
37
2.3
37
97
0
163
23
33
19
23
1.97
82305214--82305529
48
6.6
48
93
0
515
30
27
8
33
1.87
82305507--82305628
46
2.6
47
94
1
210
29
29
9
31
1.88
82305214--82305575
96
3.8
95
87
7
445
30
27
8
33
1.87
82305214--82305575
144
2.5
143
87
4
462
30
27
8
33
1.87
82317695--82318131
49
9.1
49
91
5
714
34
8
27
30
1.86
82317918--82318094
88
2.0
88
95
0
318
34
7
26
31
1.84
82317968--82318045
39
2.0
39
100
0
156
33
5
28
33
1.79
82318214--82318286
37
2.0
37
94
0
128
21
20
32
24
1.97
82324568--82324634
28
2.4
28
94
0
116
29
25
11
32
1.92
82332646--82332724
28
2.8
28
82
0
95
30
25
10
34
1.89
82337572--82337644
27
2.7
27
95
0
128
24
32
21
20
1.97
82341164--82341421
49
5.3
49
91
2
389
29
29
8
32
1.87
82343018--82343184
40
4.2
40
82
2
185
24
26
22
26
2.00
82351019--82351185
40
4.2
40
82
2
185
24
26
22
26
2.00
82359755--82359880
47
2.7
46
83
7
146
19
30
21
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82361660--82361760
28
3.5
30
82
6
118
29
14
26
28
1.95
82361689--82361764
29
2.7
28
76
13
75
30
14
26
28
1.95
82369513--82369613
28
3.5
30
82
6
118
29
14
26
28
1.95
82369542--82369617
29
2.7
28
76
13
75
30
14
26
28
1.95
82381133--82381233
28
3.5
30
82
6
118
29
14
26
28
1.95
82381162--82381237
29
2.7
28
76
13
75
30
14
26
28
1.95
82384673--82384878
48
4.3
48
91
3
299
32
10
11
45
1.75
82385140--82385202
33
1.9
33
90
0
99
23
14
44
17
1.85
82385839--82385872
14
2.4
14
90
0
50
41
8
17
32
1.80
82387503--82387670
49
3.4
49
94
0
291
61
13
2
23
1.43
82387951--82388007
30
1.9
30
89
3
89
40
28
0
31
1.57
82388957--82389073
31
3.9
30
74
15
98
24
16
9
49
1.75
82392994--82393026
14
2.4
14
85
14
50
27
36
12
24
1.91
82395932--82395981
23
2.1
25
85
10
70
50
2
4
44
1.32
82406169--82406203
18
1.9
18
94
0
61
28
8
22
40
1.84
82409410--82409460
25
2.1
24
85
3
66
11
7
1
78
1.04
82409585--82409610
7
3.7
7
100
0
52
15
0
0
84
0.62
82416740--82416781
21
2.0
21
100
0
84
33
19
9
38
1.84
82416796--82416821
2
13.0
2
100
0
52
50
0
0
50
1.00
82426684--82426795
4
28.0
4
68
13
61
24
9
1
64
1.34
82426982--82427055
3
24.7
3
91
5
123
31
2
0
66
1.06
82431086--82431122
2
18.5
2
100
0
74
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82436499--82436559
29
2.1
30
87
3
88
44
13
6
36
1.69
82439983--82440110
27
4.7
27
82
0
130
35
19
19
25
1.95
82446476--82446548
27
2.7
27
85
8
112
30
17
20
31
1.96
82446696--82446779
27
3.2
26
77
1
87
23
21
17
36
1.94
82448598--82448727
40
3.2
40
75
4
129
25
23
26
23
2.00
82454328--82454362
13
2.7
13
90
0
61
48
2
0
48
1.16
82455624--82455692
21
2.8
26
75
20
94
39
21
13
26
1.90
82470764--82470792
2
14.5
2
100
0
58
48
0
0
51
1.00
82471353--82471404
2
26.0
2
96
0
95
50
1
0
48
1.12
82479803--82479886
19
4.7
18
73
18
61
34
1
3
60
1.21
82482144--82482182
18
2.1
18
85
9
51
10
17
2
69
1.28
82485729--82485759
2
15.5
2
100
0
62
0
48
0
51
1.00
82488316--82488377
31
2.0
31
100
0
124
25
25
12
35
1.92
82494056--82494105
3
17.0
3
91
4
84
0
32
0
68
0.90
82494174--82494215
21
2.0
21
86
9
59
23
21
23
30
1.99
82497952--82498015
26
2.5
26
86
0
101
31
28
12
28
1.93
82498919--82498968
2
25.0
2
100
0
100
50
0
0
50
1.00
82504700--82504756
21
2.6
22
75
2
62
15
29
29
24
1.96
82504700--82504774
22
3.4
22
75
3
62
14
30
28
26
1.95
82507682--82507720
16
2.5
15
83
4
51
46
0
10
43
1.37
82511730--82511777
21
2.3
21
86
13
64
12
20
20
45
1.83
82513827--82513857
8
3.9
8
91
0
53
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82514049--82514128
25
3.3
23
74
19
74
67
3
26
2
1.20
82514919--82515035
40
2.9
41
89
3
166
38
9
15
36
1.80
82514919--82515059
40
3.5
38
83
8
147
36
8
18
36
1.81
82516938--82517007
27
2.5
28
93
2
115
27
14
28
30
1.95
82516938--82517019
27
3.0
27
84
8
69
28
15
25
30
1.96
82519566--82519606
9
4.6
9
82
11
57
68
7
2
21
1.26
82519566--82519606
18
2.3
18
91
8
66
68
7
2
21
1.26
82519863--82520094
3
75.0
3
68
16
100
59
2
8
30
1.38
82519865--82519901
16
2.3
16
95
0
65
67
0
8
24
1.17
82519873--82519906
16
2.1
16
94
0
59
61
2
11
23
1.43
82519953--82520032
20
4.2
20
78
9
78
61
1
6
31
1.29
82529605--82529721
35
3.2
35
86
11
171
35
0
16
47
1.47
82529605--82529711
40
2.8
38
91
6
166
34
0
16
48
1.47
82532297--82532351
21
2.6
21
85
8
85
14
30
34
20
1.92
82533275--82533314
20
2.0
20
100
0
80
20
30
0
50
1.49
82534140--82534350
46
4.5
45
75
7
172
28
16
29
24
1.97
82538456--82538511
18
3.5
15
81
18
60
37
10
16
35
1.83
82538462--82538524
17
3.5
17
87
8
90
36
12
14
36
1.84
82538435--82538532
35
2.7
37
83
15
125
35
9
18
36
1.83
82538435--82538532
19
5.4
19
87
11
136
35
9
18
36
1.83
82538435--82538551
19
6.0
22
79
17
86
35
8
17
38
1.81
82538813--82538847
18
1.9
18
88
11
54
28
0
0
71
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82546065--82546326
40
6.6
40
91
1
402
30
25
20
23
1.99
82554573--82554696
40
3.1
40
87
5
164
28
27
20
23
1.99
82556089--82556161
29
2.5
29
93
0
128
24
13
32
28
1.94
82556144--82556234
24
3.8
24
97
0
164
19
17
27
35
1.95
82556143--82556256
48
2.4
48
86
2
149
23
17
25
33
1.96
82557606--82557747
40
3.5
40
95
0
239
30
24
19
24
1.98
82564184--82564477
78
3.8
78
86
2
376
32
18
22
26
1.97
82564500--82564690
45
4.3
45
87
1
240
33
13
28
24
1.93
82564494--82564690
89
2.2
90
83
3
254
33
14
27
24
1.94
82565041--82565131
19
4.9
19
89
8
143
36
10
17
35
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345