genome.fa.s12.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  153  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41904785--41904952	40	4.2	40	79	1	158	22	27	23	26	2.00
41904801--41904950	80	1.9	80	84	5	205	21	27	24	26	1.99
41909695--41910836	591	1.9	591	95	0	2059	31	16	21	30	1.95
41919543--41919567	2	12.5	2	100	0	50	52	0	0	48	1.00
41921571--41921631	30	2.0	30	87	0	86	31	22	6	39	1.80
41925233--41925264	15	2.1	15	94	0	55	68	9	6	15	1.36
41927041--41927382	115	3.0	115	91	0	549	22	22	14	39	1.91
41931224--41931248	6	4.2	6	100	0	50	20	16	16	48	1.82
41934638--41934778	40	3.5	40	93	0	219	25	21	26	25	2.00
41934638--41934818	80	2.3	80	83	2	213	25	20	27	26	1.99
41938837--41938871	17	2.1	16	94	5	61	45	5	20	28	1.73
41945423--41945656	55	4.4	53	77	9	228	36	17	23	21	1.95
41945430--41945630	108	1.8	110	87	4	300	34	17	24	22	1.96
41953002--41953211	40	5.2	40	87	2	305	25	24	28	21	1.99
41961134--41961343	40	5.2	40	87	2	305	25	24	28	21	1.99
41965050--41965150	28	3.5	30	82	6	118	29	14	26	28	1.95
41965079--41965154	29	2.7	28	76	13	75	30	14	26	28	1.95
41972934--41973034	28	3.5	30	82	6	118	29	14	26	28	1.95
41972963--41973038	29	2.7	28	76	13	75	30	14	26	28	1.95
41978315--41978417	29	3.6	29	81	2	118	21	16	33	29	1.95
41985265--41985367	29	3.6	29	81	2	118	21	16	33	29	1.95
42007492--42007560	25	2.7	25	81	4	75	23	27	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42010553--42010682	64	2.0	64	96	0	242	37	22	20	20	1.94
42011237--42011279	18	2.5	17	81	7	50	23	4	6	65	1.37
42012510--42012865	177	2.0	175	92	1	595	38	22	12	26	1.89
42017288--42017394	53	2.0	53	83	7	137	42	4	39	13	1.64
42019442--42019591	43	3.5	42	81	7	158	26	15	25	32	1.95
42023684--42023740	30	1.9	30	82	7	71	26	22	10	40	1.86
42026004--42026049	16	2.7	18	83	12	62	13	10	0	76	1.03
42033366--42033446	43	1.9	42	84	2	108	49	2	24	23	1.62
42035447--42035901	55	8.7	53	73	10	244	24	23	16	35	1.95
42035461--42035661	54	3.7	54	77	7	201	22	22	17	37	1.94
42035634--42035750	47	2.5	47	90	0	171	25	23	14	35	1.93
42036056--42036139	44	1.9	44	82	4	107	25	23	11	39	1.89
42036921--42036953	17	1.9	17	88	11	50	69	0	0	30	0.88
42036921--42036954	18	1.9	17	88	5	50	70	0	0	29	0.87
42037247--42037337	19	4.9	19	84	8	134	36	15	12	36	1.85
42038845--42039011	40	4.2	40	82	2	185	25	27	21	25	1.99
42038845--42039011	80	2.1	79	83	7	205	25	27	21	25	1.99
42039837--42039882	17	2.5	19	74	22	53	34	23	17	23	1.96
42040927--42041200	45	6.1	45	76	5	239	27	27	13	31	1.94
42040947--42041109	89	1.8	89	91	0	272	28	29	11	30	1.91
42041140--42041356	78	2.8	77	87	2	301	25	25	17	31	1.97
42051539--42051575	18	2.1	18	90	5	58	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42051826--42051901	22	3.7	21	76	15	68	40	17	6	35	1.75
42051862--42051952	19	4.9	19	89	8	152	36	16	10	36	1.84
42051855--42051944	35	2.5	37	87	10	134	35	16	11	36	1.84
42059110--42059215	27	3.9	26	87	4	122	35	21	23	18	1.95
42059110--42059215	54	2.0	54	84	3	142	35	21	23	18	1.95
42060826--42060965	26	5.2	26	91	6	217	35	24	5	34	1.79
42060822--42060965	56	2.7	55	91	5	224	35	24	5	34	1.79
42062816--42062851	8	4.4	8	89	3	54	41	0	0	58	0.98
42063523--42063594	28	2.6	28	100	0	144	19	25	8	47	1.77
42067482--42067512	16	1.9	16	93	0	53	35	22	0	41	1.54
42067479--42067518	20	2.0	20	85	0	53	37	22	0	40	1.54
42067766--42067900	53	2.5	55	83	11	181	22	22	20	34	1.96
42070510--42070633	62	2.0	61	95	1	221	28	30	21	19	1.98
42071924--42072144	40	5.6	40	89	1	320	25	29	20	23	1.99
42075146--42075289	40	3.6	40	87	5	193	25	27	21	25	1.99
42079021--42079081	20	3.0	21	80	11	72	11	27	45	14	1.80
42079665--42079712	20	2.3	20	79	10	53	22	16	4	56	1.58
42080863--42080894	16	1.9	17	93	6	57	43	0	0	56	0.99
42087191--42087255	15	4.4	15	75	9	62	60	15	15	9	1.59
42087191--42087259	30	2.3	30	80	7	79	57	18	14	8	1.62
42094974--42095014	21	1.9	22	85	5	57	31	24	4	39	1.76
42095424--42095496	26	2.7	28	82	8	96	27	24	10	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42097142--42097253	43	2.6	43	75	0	125	29	18	22	29	1.97
42100478--42100511	14	2.4	14	95	0	59	50	2	0	47	1.16
42102368--42102441	25	2.8	27	72	12	64	56	1	1	40	1.16
42103729--42103778	25	2.0	25	88	7	75	40	0	12	48	1.40
42111132--42111194	31	2.0	31	100	0	126	47	12	15	23	1.80
42118684--42118823	61	2.3	61	82	9	171	37	6	12	42	1.69
42120202--42120256	20	2.8	20	71	15	53	60	0	0	40	0.97
42122223--42122252	14	2.1	14	93	0	51	43	0	0	56	0.99
42125436--42125507	29	2.5	28	84	4	81	31	33	13	20	1.92
42133906--42133945	20	2.0	20	90	0	62	65	5	0	30	1.14
42135687--42135725	19	2.1	19	95	0	69	56	7	0	35	1.28
42143681--42144006	48	6.8	48	87	2	431	27	29	17	25	1.97
42147023--42147095	29	2.5	29	97	0	137	24	28	16	30	1.96
42151311--42151341	16	1.9	16	93	0	53	35	22	0	41	1.54
42151308--42151347	20	2.0	20	85	0	53	37	22	0	40	1.54
42151541--42151787	55	4.7	53	77	11	206	21	23	18	36	1.95
42156372--42156556	48	3.9	48	89	0	280	27	31	19	22	1.98
42157974--42158118	40	3.6	40	81	6	168	22	25	25	26	2.00
42160337--42160622	142	2.0	142	98	0	554	32	21	7	38	1.81
42162561--42162604	19	2.3	19	100	0	88	36	0	13	50	1.42
42171280--42171325	8	5.8	8	94	0	83	54	23	21	0	1.45
42171280--42171325	24	1.9	24	100	0	92	54	23	21	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42171936--42171981	20	2.3	20	75	17	51	28	17	26	28	1.98
42190204--42190294	45	2.1	43	83	4	110	43	12	15	28	1.82
42190359--42190434	27	2.8	27	77	0	80	40	10	25	23	1.86
42193668--42193707	17	2.4	17	83	8	55	20	0	2	77	0.88
42198420--42198585	40	4.2	40	91	0	260	22	19	30	27	1.98
42202201--42202421	49	4.5	49	93	0	361	27	10	32	28	1.91
42202524--42202601	37	2.1	37	100	0	156	28	19	32	20	1.97
42204187--42204451	46	5.8	46	89	0	352	41	13	23	21	1.89
42204187--42204446	138	1.9	138	87	3	389	41	13	23	21	1.88
42205829--42205927	45	2.2	45	88	0	153	27	24	12	36	1.91
42208045--42208077	17	2.0	17	88	5	50	81	3	0	15	0.80
42208049--42208097	24	2.0	24	84	11	64	73	6	0	20	1.04
42214034--42214167	67	2.0	66	98	1	259	37	14	10	37	1.81
42214768--42214978	115	1.9	107	81	13	248	27	5	15	52	1.63
42215029--42215053	13	1.9	13	100	0	50	68	0	0	32	0.90
42227329--42227369	22	2.0	22	90	9	68	9	12	17	60	1.57
42237322--42237469	74	2.0	74	95	0	269	23	16	27	32	1.96
42252917--42253100	27	6.8	26	79	9	165	39	20	9	30	1.85
42252887--42253100	54	4.0	54	78	6	195	39	20	9	30	1.84
42252887--42253100	80	2.7	81	75	10	224	39	20	9	30	1.84
42253085--42253386	27	11.2	27	84	4	378	38	17	19	24	1.93
42253057--42253386	81	4.1	80	87	4	441	38	17	19	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42253859--42253906	22	2.2	22	85	7	62	22	29	20	27	1.99
42254065--42254140	27	2.9	26	84	3	98	17	23	22	36	1.94
42254849--42254887	18	2.2	18	100	0	78	41	0	20	38	1.53
42255164--42255351	93	2.0	93	98	0	367	35	12	14	37	1.84
42257848--42257885	20	1.9	20	88	0	58	68	2	0	28	1.03
42257846--42257896	20	2.5	19	78	12	57	68	1	1	27	1.11
42260020--42260188	46	3.7	46	79	6	139	30	20	26	22	1.98
42261196--42261290	41	2.3	41	96	0	172	17	23	44	14	1.86
42268675--42268708	17	1.9	18	94	5	61	35	5	5	52	1.50
42275500--42275545	23	2.0	23	100	0	92	34	26	4	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345