Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  326  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97676299--97676382
26
3.2
26
96
0
150
34
4
23
36
1.76
97679122--97679165
22
2.0
22
86
0
61
34
0
22
43
1.54
97685655--97685748
30
3.2
29
76
11
84
52
1
2
44
1.20
97688246--97688333
40
2.2
40
88
7
128
55
5
0
38
1.24
97689016--97689186
86
2.0
89
82
8
217
44
14
5
35
1.69
97689364--97689506
9
15.8
9
68
12
62
60
1
2
35
1.17
97689364--97689506
19
7.9
18
64
14
62
60
1
2
35
1.17
97689446--97689506
28
2.2
27
82
8
70
63
3
3
29
1.26
97689459--97689513
27
2.0
29
82
7
69
63
3
1
30
1.22
97689776--97689886
10
11.5
10
69
12
54
30
2
2
63
1.22
97689776--97689885
19
5.7
19
72
9
80
30
2
2
63
1.22
97689792--97689873
20
4.3
19
72
17
64
32
3
2
60
1.27
97690307--97690350
2
23.5
2
82
13
58
50
2
0
47
1.13
97691477--97691534
28
2.1
28
100
0
116
24
3
17
55
1.57
97691486--97691533
15
3.3
15
71
11
55
27
2
18
52
1.57
97698008--97698042
16
2.2
16
89
0
52
28
17
2
51
1.59
97698398--97698700
150
2.0
148
86
1
417
40
6
29
23
1.80
97700592--97700808
21
10.4
21
74
5
145
48
16
17
17
1.82
97700592--97700808
63
3.5
62
78
4
204
48
16
17
17
1.82
97700611--97700807
84
2.3
84
85
0
259
48
15
16
18
1.81
97700611--97700807
42
4.7
42
83
0
223
48
15
16
18
1.81
97707075--97707123
25
2.0
25
84
11
66
71
0
6
22
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97710063--97710235
27
6.4
27
80
0
193
35
19
19
25
1.96
97710062--97710234
54
3.2
53
86
4
213
35
19
19
25
1.95
97710451--97710577
59
2.2
59
95
0
227
9
12
40
37
1.76
97716768--97716810
15
2.8
15
80
16
52
65
4
0
30
1.13
97718281--97718333
19
2.7
20
85
8
72
30
16
24
28
1.97
97719427--97719507
37
2.2
35
79
16
83
38
2
2
56
1.26
97720712--97720784
32
2.5
30
82
12
89
52
20
2
24
1.60
97720745--97720798
27
2.0
27
85
7
74
51
18
3
25
1.62
97723169--97723221
26
2.0
27
85
7
74
24
13
22
39
1.90
97724707--97724840
26
5.2
26
94
3
225
37
23
5
34
1.77
97740200--97740313
59
1.9
60
87
1
167
52
10
11
25
1.69
97742840--97742891
5
10.4
5
95
0
77
53
0
5
40
1.25
97743077--97743111
2
17.5
2
100
0
70
48
0
0
51
1.00
97743579--97743631
3
17.7
3
78
0
52
69
0
24
5
1.09
97743577--97743631
18
2.8
20
78
16
60
70
0
23
5
1.07
97743588--97743631
18
2.4
18
88
0
61
72
0
20
6
1.07
97745337--97745392
27
2.1
27
100
0
112
37
14
14
33
1.86
97747176--97747212
13
2.8
14
88
12
60
83
0
10
5
0.79
97747416--97747453
2
19.0
2
100
0
76
50
0
0
50
1.00
97752959--97753292
144
2.3
144
83
0
398
27
17
28
26
1.98
97752960--97753292
48
6.9
48
76
4
285
27
18
28
25
1.98
97763018--97763088
33
2.2
33
83
14
87
28
4
14
53
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97763498--97763534
16
2.3
16
86
13
58
40
0
0
59
0.97
97763548--97763603
18
2.9
19
73
26
55
51
0
0
48
1.00
97766492--97766619
45
2.9
45
83
2
143
36
22
22
17
1.95
97776958--97777442
44
10.9
44
75
6
377
29
18
17
34
1.93
97776958--97777392
132
3.3
131
85
2
516
30
17
16
35
1.93
97777312--97777493
50
3.8
50
80
7
182
28
19
19
33
1.96
97785553--97785590
19
2.1
19
90
5
60
55
10
0
34
1.34
97790057--97790124
12
6.0
11
73
22
52
58
2
7
30
1.40
97790066--97790128
12
5.2
12
76
16
60
58
3
7
30
1.42
97791429--97791472
21
2.0
22
95
4
81
18
13
6
61
1.54
97798878--97798914
19
1.9
19
88
0
56
43
5
16
35
1.71
97805644--97805712
26
2.7
26
81
2
95
36
20
21
21
1.95
97813211--97813253
13
3.3
13
80
6
52
65
6
0
27
1.18
97819487--97819526
2
20.0
2
100
0
80
50
0
50
0
1.00
97825090--97825115
2
13.0
2
100
0
52
50
0
0
50
1.00
97826004--97826037
16
2.1
16
100
0
68
38
11
0
50
1.39
97827625--97827657
15
2.2
16
89
10
52
54
21
0
24
1.45
97828206--97828527
47
6.8
47
77
11
268
22
30
19
27
1.98
97828206--97828527
94
3.4
93
78
8
314
22
30
19
27
1.98
97832023--97832061
20
2.0
20
90
10
62
64
5
5
25
1.35
97836387--97836422
2
18.0
2
100
0
72
50
0
0
50
1.00
97836487--97836524
13
2.9
13
81
14
51
65
0
34
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97836951--97837068
51
2.3
51
89
2
175
40
11
22
26
1.87
97837377--97837431
15
3.7
15
90
2
85
34
0
12
52
1.40
97837807--97837893
21
4.0
23
79
10
83
16
21
24
37
1.93
97838135--97838187
20
2.7
20
73
23
58
33
5
22
37
1.78
97841388--97841425
20
1.9
20
88
0
58
34
26
31
7
1.85
97841391--97841476
40
2.1
41
79
14
99
32
20
30
16
1.95
97845673--97845749
32
2.4
32
76
4
84
53
0
0
46
1.00
97850557--97850725
45
3.7
45
76
3
144
38
9
19
32
1.84
97852694--97852790
40
2.4
40
86
3
124
31
25
15
26
1.96
97859989--97860083
40
2.4
40
85
3
120
31
26
15
26
1.96
97862514--97862595
42
2.0
42
82
4
103
42
15
19
21
1.89
97866464--97866520
26
2.2
26
87
6
80
33
19
5
42
1.74
97866828--97866870
18
2.4
18
96
0
77
48
16
6
27
1.71
97866837--97866870
9
3.8
9
92
0
59
47
14
8
29
1.75
97867183--97867238
16
3.4
15
81
18
51
62
7
5
25
1.42
97867197--97867239
18
2.4
19
80
7
54
65
6
2
25
1.30
97870103--97870141
19
2.1
19
90
0
60
61
7
5
25
1.44
97870640--97870680
19
2.2
19
95
0
73
21
0
31
46
1.52
97876887--97876920
16
2.1
16
100
0
68
29
5
29
35
1.81
97881165--97881205
8
4.9
8
85
8
55
63
2
0
34
1.08
97881167--97881254
9
9.7
9
74
16
58
63
2
2
31
1.19
97881165--97881197
17
1.9
17
93
0
57
63
3
0
33
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97886521--97886966
3
150.0
3
74
11
321
62
2
4
30
1.30
97886812--97886925
55
2.2
51
77
6
102
61
4
7
27
1.41
97887400--97887506
3
35.7
3
70
7
56
63
4
3
28
1.31
97887446--97887510
33
2.0
33
87
0
94
61
6
1
30
1.29
97889013--97889266
39
6.5
39
88
1
314
44
20
5
30
1.74
97891556--97891665
39
2.8
39
95
0
193
21
20
31
26
1.98
97891556--97891709
78
2.0
78
82
5
186
22
20
30
27
1.98
97899587--97899726
39
3.6
39
88
2
194
22
23
29
24
1.99
97902044--97902084
21
2.0
21
90
0
64
21
17
31
29
1.96
97904570--97904698
38
3.3
39
74
9
120
51
4
6
37
1.48
97904808--97904839
10
3.2
10
100
0
64
9
50
31
9
1.66
97905230--97905265
16
2.3
15
95
4
63
5
0
27
66
1.13
97905261--97905296
16
2.3
15
90
4
54
0
8
2
88
0.59
97905983--97906188
79
2.5
80
92
7
342
33
18
17
31
1.94
97906188--97906248
29
2.1
30
90
9
99
40
29
9
19
1.84
97906271--97906432
88
1.8
88
85
2
227
36
19
17
26
1.94
97906342--97906376
14
2.6
14
90
4
54
51
5
14
28
1.65
97905981--97906532
167
3.3
166
73
14
494
36
18
16
29
1.93
97906068--97906607
244
2.2
243
83
8
672
36
18
16
28
1.93
97906394--97906925
72
6.8
73
74
13
395
33
18
17
30
1.95
97906591--97907068
165
2.9
168
88
4
709
31
20
18
29
1.96
97906764--97906908
74
1.9
75
88
5
222
28
22
18
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97906929--97907068
74
1.9
75
89
3
219
27
23
20
28
1.99
97907133--97907298
72
2.3
71
88
4
244
41
21
15
22
1.89
97907298--97907561
70
3.7
71
84
4
356
37
22
14
25
1.92
97907298--97907561
71
3.7
69
84
4
339
37
22
14
25
1.92
97907136--97907728
257
2.3
257
95
2
1042
36
22
14
25
1.93
97916443--97916540
39
2.6
37
77
4
99
54
4
6
35
1.45
97917055--97917139
16
5.7
16
73
18
67
3
3
22
70
1.18
97917356--97917467
33
3.4
33
74
14
88
32
18
25
23
1.97
97917905--97917934
2
15.0
2
100
0
60
50
0
0
50
1.00
97919125--97919164
21
1.9
21
89
0
62
30
27
15
27
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345