genome.fa.s12.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  151  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41317928--41318416	266	1.8	266	85	3	689	31	19	15	33	1.93
41317670--41318419	89	8.4	88	72	6	434	31	18	15	34	1.93
41318988--41319029	15	2.7	15	82	10	50	38	0	28	33	1.58
41322697--41322881	40	4.6	40	81	5	189	22	27	24	25	2.00
41327955--41328104	43	3.5	42	81	5	167	27	16	24	32	1.96
41327958--41328120	86	1.9	84	81	5	193	26	16	24	31	1.96
41328752--41328776	12	2.1	12	100	0	50	16	24	40	20	1.91
41335328--41335409	26	3.2	26	92	0	137	32	7	23	36	1.82
41345022--41345160	60	2.3	59	84	8	165	25	25	20	27	1.99
41345153--41345198	20	2.4	19	81	3	56	28	28	19	23	1.98
41356662--41356713	27	2.0	26	84	3	68	17	26	21	34	1.95
41356762--41356821	27	2.3	26	82	2	66	21	21	20	36	1.95
41358557--41358607	26	2.0	26	84	7	68	47	13	1	37	1.55
41358564--41358614	26	1.9	27	84	4	68	47	15	1	35	1.57
41359232--41359271	21	1.9	21	85	10	55	32	22	17	27	1.96
41363858--41364048	25	7.6	25	81	0	220	41	26	13	18	1.88
41364197--41364319	41	3.0	41	91	0	192	25	28	23	22	1.99
41364578--41364873	27	11.0	27	77	5	188	32	11	17	39	1.85
41364559--41364846	81	3.6	80	77	6	233	31	10	18	39	1.84
41364802--41364873	26	2.7	26	91	4	108	30	12	19	37	1.89
41364862--41364936	27	2.8	27	87	0	96	29	18	17	34	1.94
41367359--41367400	15	2.7	15	82	10	50	38	0	28	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41372401--41372711	39	8.0	39	94	0	523	22	25	29	22	1.99
41375445--41375510	20	3.3	20	82	0	87	33	19	24	22	1.97
41375655--41375691	20	1.9	18	89	10	56	37	5	8	48	1.56
41383330--41383407	29	2.7	29	83	0	102	26	17	33	21	1.96
41393704--41393780	29	2.7	29	83	2	102	27	18	32	22	1.97
41401158--41401267	37	3.0	37	90	2	168	27	31	17	23	1.97
41401408--41402534	48	23.0	48	90	4	1761	32	25	5	36	1.80
41401417--41402534	98	11.4	98	93	2	1849	32	25	5	36	1.80
41401417--41402534	246	4.6	245	94	1	1899	32	25	5	36	1.80
41408343--41408382	9	4.4	9	100	0	80	30	22	12	35	1.91
41420521--41420728	40	5.2	40	81	2	240	26	26	20	25	1.99
41423852--41423973	58	2.1	59	81	7	151	42	16	15	25	1.87
41425162--41425328	40	4.2	40	77	6	144	25	22	28	24	1.99
41431771--41431938	40	4.2	40	79	2	178	26	26	21	25	1.99
41431762--41431938	80	2.2	80	80	3	196	26	26	21	25	1.99
41439176--41439241	23	2.9	23	86	4	89	27	25	19	27	1.99
41439292--41439351	20	3.0	20	90	0	102	31	20	11	36	1.88
41439394--41439441	25	1.9	25	86	0	69	25	16	25	33	1.96
41447149--41447310	38	4.4	38	84	12	232	22	22	16	38	1.93
41447172--41447285	31	3.5	31	89	8	147	23	21	14	40	1.90
41447172--41447310	69	2.0	68	97	1	260	23	21	15	39	1.92
41447502--41447596	24	4.0	24	85	10	124	26	24	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41447502--41447595	47	2.0	49	85	12	133	26	24	21	27	1.99
41447647--41447706	20	3.0	20	90	0	102	31	20	11	36	1.88
41447749--41447796	25	1.9	25	86	0	69	25	16	25	33	1.96
41455076--41455281	27	7.6	27	86	0	259	40	20	8	30	1.82
41455265--41455325	27	2.3	27	91	0	104	39	21	9	29	1.85
41455076--41455282	81	2.6	81	87	0	297	40	20	8	30	1.82
41455304--41455379	27	2.8	27	80	7	82	32	26	7	32	1.85
41455381--41455699	27	11.9	27	85	1	320	37	17	20	24	1.93
41455929--41456078	67	2.2	67	93	0	255	18	28	23	30	1.97
41456016--41456066	27	1.9	26	88	4	75	17	27	21	33	1.96
41456185--41456272	6	14.3	6	73	17	74	18	17	15	48	1.81
41456185--41456263	31	2.5	31	91	0	122	17	17	15	49	1.80
41456185--41456272	19	4.8	18	72	18	74	18	17	15	48	1.81
41472844--41473022	27	6.7	27	90	1	263	41	20	6	30	1.78
41472844--41473120	27	10.3	27	84	2	258	38	20	8	31	1.83
41473045--41473574	106	5.0	108	83	9	586	29	21	8	40	1.83
41473072--41473575	27	18.9	27	84	6	564	28	21	8	41	1.82
41474808--41474855	25	1.9	25	86	0	69	33	25	16	25	1.96
41474898--41474958	20	3.0	20	92	0	104	34	11	21	32	1.89
41475008--41475150	24	6.0	24	91	4	209	28	22	22	26	1.99
41475008--41475150	47	3.0	47	90	5	207	28	22	22	26	1.99
41475008--41475151	71	2.0	72	89	4	220	29	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41475340--41475403	31	2.1	31	90	0	101	35	15	23	25	1.94
41478187--41478334	27	5.6	26	84	7	176	40	20	7	31	1.80
41478170--41478334	52	3.2	53	86	7	205	40	20	7	32	1.81
41478187--41478428	27	9.3	27	77	9	166	38	21	8	32	1.83
41478380--41478883	54	9.4	54	84	4	610	27	22	8	41	1.83
41478380--41478884	27	18.9	27	85	5	472	27	21	8	41	1.83
41478380--41478883	134	3.8	133	86	4	685	27	22	8	41	1.83
41480118--41480165	25	1.9	25	86	0	69	33	25	16	25	1.96
41480208--41480268	20	3.0	20	92	0	104	34	11	21	32	1.89
41480318--41480460	24	6.0	24	91	4	209	28	22	22	26	1.99
41480318--41480460	47	3.0	47	90	5	207	28	22	22	26	1.99
41480318--41480461	71	2.0	72	89	4	220	29	22	22	26	1.99
41480652--41480714	30	2.1	31	90	3	101	36	15	23	23	1.94
41483503--41483678	27	6.7	27	87	4	236	40	21	6	31	1.79
41483503--41483732	80	2.9	80	80	8	238	40	21	7	30	1.82
41483525--41483736	54	3.9	54	83	4	173	39	21	8	30	1.83
41483663--41483736	27	2.8	26	85	6	103	39	24	9	27	1.86
41483728--41484234	27	18.8	27	86	3	594	28	21	8	41	1.83
41483863--41484278	81	5.1	81	82	6	223	29	21	8	40	1.83
41485472--41485519	25	1.9	25	86	0	69	33	25	16	25	1.96
41485562--41485622	20	3.0	20	92	0	104	34	11	21	32	1.89
41485672--41485813	24	6.0	24	90	5	200	28	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41485672--41485814	70	2.0	72	87	5	211	29	21	22	26	1.99
41486005--41486068	31	2.1	31	90	0	101	35	15	23	25	1.94
41487571--41487738	48	3.5	48	78	4	169	26	29	17	26	1.97
41492102--41492349	40	6.2	40	88	1	338	22	21	29	26	1.99
41492102--41492349	120	2.1	120	89	2	374	22	21	29	26	1.99
41499337--41499604	40	6.7	40	94	0	412	23	22	29	25	1.99
41499333--41499624	120	2.4	120	90	1	462	23	21	28	26	1.99
41502061--41502112	26	2.0	26	100	0	104	26	26	11	34	1.91
41504903--41504977	34	2.2	34	95	0	132	54	5	21	18	1.63
41508792--41508826	17	2.1	17	94	0	61	31	25	5	37	1.80
41512134--41512235	42	2.4	43	79	9	111	28	33	19	18	1.96
41525586--41525713	49	2.6	50	80	4	145	24	26	19	29	1.98
41527141--41527243	29	3.6	28	81	5	116	21	16	33	29	1.95
41549781--41549845	25	2.6	25	87	0	94	36	26	16	20	1.93
41556107--41556150	23	1.9	23	81	9	54	34	0	27	38	1.57
41556111--41556179	34	2.0	34	81	10	79	39	0	24	36	1.56
41557807--41557838	13	2.3	15	89	10	50	37	9	34	18	1.83
41566983--41567057	20	3.8	20	89	0	114	37	22	28	12	1.90
41572461--41572547	37	2.3	36	94	5	147	26	33	19	20	1.97
41572596--41572936	49	7.0	49	94	0	547	29	29	8	31	1.87
41572903--41572963	27	2.3	27	97	0	113	37	24	0	37	1.56
41572852--41573012	76	2.1	76	98	0	313	32	26	4	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41572805--41573050	125	2.0	125	93	0	420	30	27	7	34	1.84
41572928--41573050	49	2.5	49	91	0	219	30	27	6	34	1.82
41578351--41578388	17	2.2	18	86	13	53	34	10	7	47	1.67
41581250--41581327	40	2.0	40	85	10	106	61	1	1	35	1.12
41582134--41582186	21	2.5	21	87	0	79	30	35	9	24	1.87
41582722--41582779	29	2.0	30	86	3	82	51	1	3	43	1.28
41587128--41587154	13	2.1	13	100	0	54	14	33	37	14	1.88
41590148--41590299	40	3.8	39	78	5	135	26	21	27	24	1.99
41590204--41590299	39	2.4	39	82	1	120	29	19	27	23	1.99
41590201--41590340	40	3.5	40	77	6	124	27	23	26	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345