genome.fa.s12.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  171  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48133621--48133793	46	3.7	46	79	10	190	23	20	26	29	1.99
48133618--48133788	93	1.8	93	91	0	279	22	21	27	28	1.99
48136734--48136813	15	5.4	15	77	7	83	10	18	12	58	1.61
48139194--48139366	46	3.7	46	77	11	183	22	19	27	30	1.98
48139191--48139361	93	1.8	93	89	2	272	22	19	28	29	1.98
48141758--48141801	19	2.4	19	85	7	56	50	0	9	40	1.34
48141832--48141862	15	2.1	15	100	0	62	41	0	0	58	0.98
48144075--48144122	25	1.9	25	86	0	69	33	25	16	25	1.96
48144153--48144208	11	5.5	11	71	16	57	35	12	19	32	1.89
48144142--48144208	20	3.3	20	93	0	116	34	11	20	32	1.90
48144257--48144412	24	6.4	24	90	2	231	27	19	21	31	1.97
48144258--48144406	49	3.1	49	90	0	228	28	19	20	31	1.97
48146416--48146457	15	2.9	15	85	3	50	38	0	2	59	1.10
48146431--48146461	15	2.1	15	93	0	53	38	0	0	61	0.96
48149724--48149891	40	4.2	40	79	3	160	23	26	23	27	2.00
48149740--48149889	80	1.9	80	83	8	198	22	26	24	27	1.99
48157725--48157892	40	4.2	40	79	3	160	23	26	23	27	2.00
48157741--48157890	80	1.9	80	83	8	198	22	26	24	27	1.99
48159955--48160021	20	3.3	20	89	0	107	32	13	20	32	1.92
48160071--48160213	24	6.0	24	92	3	227	30	19	21	28	1.98
48163302--48163454	40	3.8	40	75	9	125	23	22	27	26	1.99
48167730--48167913	40	4.6	39	75	6	138	26	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48167770--48167958	80	2.4	81	77	4	186	23	24	29	22	1.99
48175887--48175995	37	2.9	37	84	10	132	22	22	29	24	1.99
48175847--48176036	77	2.4	76	80	6	186	24	22	28	24	1.99
48189123--48189168	23	1.9	25	86	8	69	6	8	10	73	1.23
48189165--48189243	18	4.4	18	67	9	54	3	2	18	74	1.08
48189196--48189225	12	2.4	13	94	5	53	0	6	3	90	0.56
48189870--48190446	88	7.0	83	72	16	292	36	18	16	28	1.93
48190038--48190099	30	2.1	30	90	6	99	41	29	9	19	1.83
48190247--48190774	72	6.8	73	76	12	441	32	19	18	29	1.95
48190613--48190774	74	2.1	75	85	7	222	32	20	18	28	1.97
48190443--48191101	165	4.0	165	89	3	933	33	20	18	27	1.96
48190768--48190940	73	2.3	77	84	7	228	32	19	19	28	1.96
48190443--48191367	331	2.9	327	83	8	1078	33	20	18	27	1.96
48190920--48190954	14	2.5	14	90	0	52	57	5	20	17	1.60
48190930--48191385	72	6.3	72	71	12	319	37	21	16	25	1.94
48191260--48191630	120	2.9	123	79	11	365	36	22	14	25	1.93
48191385--48191646	70	3.8	71	81	6	295	36	22	14	26	1.93
48191565--48191731	85	2.0	85	86	2	237	39	20	16	23	1.92
48191637--48191801	71	2.3	71	88	5	244	41	20	15	22	1.89
48191677--48192061	139	3.0	123	79	10	384	38	22	14	24	1.91
48191185--48192046	416	2.1	417	97	0	1656	37	22	15	25	1.93
48191801--48192115	69	4.5	69	82	6	368	35	23	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48197114--48197149	12	3.0	12	95	0	63	41	5	25	27	1.77
48199857--48199895	11	3.5	11	82	6	51	84	5	10	0	0.76
48200195--48200237	17	2.5	17	81	7	52	6	2	23	67	1.27
48200228--48200263	16	2.3	15	90	4	54	0	8	2	88	0.59
48203901--48204009	40	2.8	40	84	1	139	26	23	25	23	2.00
48205704--48205853	67	2.2	67	81	8	171	32	17	28	21	1.96
48205728--48205911	67	2.8	64	77	8	194	29	17	29	22	1.97
48210116--48210265	67	2.2	67	81	8	171	32	17	28	21	1.96
48210140--48210323	67	2.8	64	77	7	192	29	17	29	22	1.97
48212990--48213024	18	2.0	17	88	5	52	62	14	5	17	1.49
48219473--48219635	40	4.1	40	87	2	213	26	29	20	22	1.99
48227539--48227702	40	4.1	40	87	1	213	26	29	21	22	1.99
48228452--48228477	2	13.0	2	100	0	52	50	0	0	50	1.00
48232754--48232815	31	2.0	31	100	0	124	35	22	6	35	1.80
48234105--48234183	27	2.9	27	80	0	77	36	20	21	21	1.95
48234327--48234430	27	3.9	26	76	10	95	23	18	22	36	1.95
48234470--48234567	27	3.6	28	76	13	96	34	9	16	39	1.80
48234532--48234674	27	5.3	27	79	8	112	27	11	21	39	1.88
48236219--48236286	27	2.5	28	92	2	111	29	11	26	32	1.92
48236243--48236300	27	2.1	27	81	6	64	31	12	24	32	1.91
48237780--48237877	27	3.6	27	91	2	153	26	7	21	44	1.77
48237780--48237899	27	4.5	27	88	3	145	29	7	21	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48237896--48237966	27	2.6	27	90	0	106	26	25	19	28	1.99
48242111--48242153	3	14.3	3	100	0	86	34	0	0	65	0.93
48247369--48247467	42	2.3	42	82	1	117	31	26	17	25	1.97
48247350--48247519	43	4.0	43	77	7	157	31	26	17	24	1.97
48260358--48260456	28	3.5	28	87	4	119	27	15	27	30	1.96
48264257--48264281	12	2.1	12	100	0	50	32	8	32	28	1.86
48268371--48268533	40	4.1	39	84	5	193	25	29	21	23	1.99
48268367--48268533	80	2.1	79	85	4	221	25	28	21	23	1.99
48276459--48276606	40	3.7	40	86	1	190	25	28	21	24	1.99
48279695--48279793	28	3.5	28	81	4	101	28	13	27	31	1.94
48284299--48284506	40	5.2	39	80	4	164	25	23	25	25	2.00
48284341--48284506	80	2.1	80	82	4	201	24	24	27	24	2.00
48287255--48287510	40	6.5	40	88	5	353	24	23	28	23	2.00
48300932--48301103	43	4.0	43	72	10	145	23	16	27	33	1.96
48304221--48304390	46	3.7	46	75	13	177	22	18	27	30	1.98
48304215--48304385	93	1.8	93	93	0	297	22	19	28	29	1.98
48312786--48312903	43	2.7	43	88	8	177	30	13	21	34	1.92
48325392--48325543	40	3.8	39	81	6	153	23	26	24	26	2.00
48328217--48328339	47	2.6	47	96	0	219	31	8	30	29	1.88
48328317--48328584	48	5.6	48	93	0	428	34	8	27	29	1.86
48328633--48328718	37	2.3	37	97	0	163	23	19	33	23	1.97
48330613--48331003	40	9.8	40	92	2	608	26	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48330613--48330984	199	1.9	199	93	1	638	26	20	26	26	1.99
48334470--48334592	47	2.6	47	96	0	219	31	8	30	29	1.88
48334570--48334837	48	5.6	48	93	0	428	34	8	27	29	1.86
48334886--48334971	37	2.3	37	97	0	163	23	19	33	23	1.97
48340762--48340822	30	2.0	30	87	0	86	39	4	24	31	1.77
48345701--48345787	28	3.1	28	80	6	104	24	13	33	28	1.93
48347305--48347433	46	2.8	46	91	2	197	31	29	20	19	1.97
48347313--48347452	46	3.0	45	85	6	124	30	29	20	20	1.97
48352710--48352779	27	2.5	28	86	2	97	32	25	14	27	1.94
48360588--48360657	27	2.5	28	83	2	88	32	24	14	28	1.94
48365787--48365958	93	1.8	93	94	0	308	28	29	21	20	1.98
48365780--48365955	46	3.8	46	79	12	207	29	28	21	20	1.98
48371992--48372037	16	2.9	16	86	0	65	45	21	17	15	1.85
48371992--48372043	16	3.2	16	83	0	59	48	21	15	15	1.81
48376419--48376550	29	4.6	29	86	0	165	25	15	34	25	1.95
48377598--48377633	16	2.2	17	90	9	58	25	44	13	16	1.85
48383756--48383887	29	4.6	29	86	0	165	25	15	34	25	1.95
48386484--48386552	28	2.5	28	93	4	115	27	14	27	30	1.95
48386485--48386566	26	3.1	26	84	10	69	26	17	25	30	1.97
48391625--48391941	49	6.5	49	97	0	580	29	8	32	29	1.87
48391699--48391781	27	3.3	27	60	16	68	31	4	30	33	1.79
48392043--48392127	37	2.3	37	95	0	152	24	20	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48394210--48394340	29	4.5	29	99	0	253	26	16	31	25	1.97
48394328--48394352	12	2.1	12	100	0	50	20	16	32	32	1.94
48394299--48394381	41	2.0	41	95	0	148	24	15	32	27	1.95
48397827--48398094	49	5.5	49	96	0	491	29	8	32	30	1.87
48398196--48398280	37	2.3	37	95	0	152	24	20	34	21	1.97
48404764--48404833	27	2.5	28	95	2	124	28	14	27	30	1.95
48404764--48404845	27	3.0	27	85	8	78	29	15	24	30	1.96
48409465--48409517	21	2.5	21	100	0	106	20	26	26	26	1.99
48411253--48411311	27	2.2	27	84	6	75	35	23	8	32	1.85
48411270--48411787	27	19.2	27	84	3	614	27	22	8	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345