genome.fa.s12.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  136  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36974224--36974465	47	5.1	47	96	1	441	34	8	28	28	1.86
36974457--36974656	48	4.2	48	95	0	355	32	6	29	32	1.83
36974696--36974786	37	2.4	37	96	1	164	23	18	32	25	1.97
36976691--36977072	40	9.6	40	87	4	450	24	20	28	26	1.99
36980711--36981003	47	6.2	47	96	0	532	35	8	28	27	1.86
36980995--36981194	48	4.2	48	95	0	355	32	6	29	32	1.83
36984104--36984161	11	5.5	10	75	17	55	13	8	1	75	1.10
36984106--36984177	32	2.3	32	81	15	80	18	6	1	73	1.12
36988304--36988496	43	4.5	43	88	3	266	29	27	17	25	1.98
36993575--36993619	6	7.0	6	85	10	54	20	2	2	75	1.01
36993573--36993612	13	3.1	13	85	10	55	22	2	0	75	0.93
36993575--36993619	19	2.3	19	92	3	72	20	2	2	75	1.01
36993969--36994002	7	4.9	7	96	0	50	35	50	0	14	1.44
36993956--36994006	21	2.4	21	75	12	50	39	41	0	19	1.52
36994023--36994100	21	3.7	20	73	11	66	46	25	1	26	1.61
36994258--36994311	15	3.7	15	76	16	51	40	35	1	22	1.65
36994269--36994310	22	2.0	21	85	4	57	40	38	0	21	1.53
36994479--36994519	14	2.7	16	81	11	50	14	0	34	51	1.43
36994496--36994525	14	2.2	13	94	5	51	20	0	33	46	1.51
36994527--36994574	23	2.1	22	85	11	62	27	0	22	50	1.50
36994615--36994834	41	5.4	41	94	0	359	18	25	24	31	1.97
36994615--36994896	41	6.9	41	90	3	306	19	25	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36994929--36994954	12	2.2	12	100	0	52	46	30	15	7	1.74
36996206--36996667	49	9.5	49	94	1	761	33	9	27	29	1.89
36996716--36996802	37	2.3	36	94	5	147	20	19	33	26	1.97
37007608--37007710	29	3.6	28	81	5	116	21	16	33	29	1.95
37015407--37015509	29	3.6	28	81	5	116	21	16	33	29	1.95
37018003--37018172	23	7.3	23	76	8	116	35	15	23	25	1.94
37018011--37018137	45	2.8	44	77	13	141	34	16	23	25	1.95
37025241--37025370	50	2.6	49	89	3	181	29	28	17	24	1.97
37027767--37027837	34	2.1	34	91	0	115	45	9	18	26	1.81
37043494--37043518	9	2.8	9	100	0	50	52	24	12	12	1.72
37047198--37047229	13	2.4	14	94	5	57	71	6	0	21	1.07
37057084--37057258	46	3.8	45	80	10	201	28	29	20	21	1.98
37057092--37057263	93	1.8	93	92	2	292	27	29	20	21	1.98
37057089--37057278	46	4.1	46	75	15	160	28	28	20	21	1.98
37059641--37059690	15	3.4	15	86	2	66	60	12	18	10	1.59
37059652--37059699	15	3.2	15	79	5	53	56	14	16	12	1.68
37062637--37062808	93	1.8	93	91	0	281	27	29	20	22	1.99
37062629--37062804	46	3.8	46	79	12	198	28	28	20	22	1.98
37066123--37066196	35	2.1	35	100	0	148	39	10	18	31	1.86
37070973--37071012	21	2.0	20	90	5	62	30	55	0	15	1.41
37073042--37073070	13	2.2	13	100	0	58	58	13	13	13	1.63
37077865--37078082	40	5.4	40	86	3	260	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077865--37078096	120	1.9	120	83	3	297	26	23	26	23	2.00
37078025--37078108	40	2.1	40	82	4	98	26	27	26	20	1.99
37077863--37078108	80	3.1	80	80	2	190	26	23	26	23	2.00
37085966--37086157	40	4.8	40	88	1	251	26	22	26	24	2.00
37085966--37086157	79	2.4	80	85	1	260	26	22	26	24	2.00
37085968--37086184	40	5.4	40	85	4	242	26	23	26	23	2.00
37085968--37086198	79	2.9	79	80	3	187	26	23	26	23	2.00
37094830--37095141	47	6.6	45	75	11	204	23	29	19	27	1.98
37094973--37095144	94	1.8	92	85	9	242	23	29	19	27	1.98
37101532--37101587	28	2.0	28	82	10	69	17	42	21	17	1.89
37102769--37102883	46	2.5	44	87	9	153	26	29	17	26	1.97
37107117--37107199	30	2.7	31	88	3	125	22	27	19	30	1.98
37107420--37107490	25	2.9	24	83	10	90	26	19	25	28	1.99
37107537--37107573	11	3.5	11	82	14	51	35	18	13	32	1.90
37119044--37119230	93	2.0	93	92	0	311	31	21	21	24	1.98
37121555--37121762	40	5.2	39	82	4	213	26	27	21	24	1.99
37128048--37128254	24	8.6	24	97	0	369	35	25	17	21	1.95
37128702--37128731	2	15.0	2	100	0	60	50	0	0	50	1.00
37135745--37135977	24	9.8	24	97	0	405	36	24	18	20	1.95
37140387--37140495	39	2.8	38	80	8	112	23	28	23	23	2.00
37153815--37153859	22	2.0	22	83	12	56	42	4	22	31	1.73
37163100--37163244	43	3.4	42	77	5	123	31	15	20	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37181562--37181610	25	2.0	25	100	0	98	20	32	28	18	1.96
37182515--37182729	46	4.7	43	78	11	173	22	29	20	26	1.99
37182515--37182732	94	2.3	92	81	9	239	22	29	21	26	1.99
37184536--37184685	67	2.2	67	81	8	171	34	17	27	21	1.95
37184560--37184743	67	2.8	64	76	8	185	30	16	28	23	1.96
37193756--37193912	46	3.4	45	73	11	129	22	27	21	28	1.99
37202043--37202174	29	4.6	29	82	0	147	26	15	33	24	1.95
37205428--37205509	40	2.0	42	85	4	114	21	23	39	15	1.92
37206068--37206108	21	2.0	21	95	0	73	24	26	4	43	1.74
37210140--37210288	80	1.9	80	81	2	183	22	30	24	22	1.99
37210181--37210288	40	2.7	38	85	8	128	21	29	25	23	1.99
37215946--37216094	80	1.9	80	81	2	183	22	30	24	22	1.99
37215987--37216094	40	2.7	38	85	8	128	21	29	25	23	1.99
37224066--37224214	80	1.9	80	81	2	183	22	30	24	22	1.99
37224107--37224214	40	2.7	38	85	8	128	21	29	25	23	1.99
37228357--37228386	14	2.1	14	93	0	51	33	0	46	20	1.51
37232717--37232910	47	4.1	47	87	0	262	33	10	28	27	1.90
37232868--37233064	98	2.0	96	89	6	299	36	6	25	31	1.82
37232880--37233064	48	3.8	48	87	5	291	36	6	25	31	1.82
37233210--37233318	37	2.9	37	95	0	191	22	19	31	26	1.98
37234641--37234707	23	3.2	23	64	24	65	25	22	26	25	2.00
37234587--37234887	40	7.5	40	94	0	503	23	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37238831--37239085	55	4.8	53	75	13	213	36	15	25	21	1.93
37238831--37239038	55	3.8	53	77	12	217	35	15	26	23	1.94
37238839--37239038	108	1.8	110	87	4	298	34	15	26	23	1.95
37239278--37239308	16	1.9	16	93	0	53	41	0	22	35	1.54
37240002--37240030	2	14.5	2	100	0	58	48	0	0	51	1.00
37246216--37246294	23	3.4	23	91	1	122	30	18	26	24	1.98
37249357--37249692	48	7.0	48	83	4	327	27	15	27	29	1.96
37249357--37249689	144	2.3	142	80	6	373	27	15	27	29	1.96
37257779--37257827	11	4.7	11	78	12	50	32	10	22	34	1.88
37257875--37257945	25	2.8	25	91	2	106	25	23	22	28	2.00
37257884--37257972	25	3.6	24	82	11	83	25	24	21	28	1.99
37258166--37258248	30	2.7	31	85	3	116	33	20	24	21	1.97
37262821--37262984	71	2.3	71	100	0	328	18	28	17	35	1.94
37262821--37263018	71	2.8	70	91	3	258	20	28	17	33	1.95
37270385--37270562	66	2.7	65	80	11	177	19	28	16	35	1.93
37270408--37270562	66	2.3	70	91	8	259	18	27	16	37	1.92
37270412--37270596	66	2.8	67	85	9	186	20	28	15	35	1.93
37274854--37275094	40	6.0	40	87	2	297	27	26	20	24	1.99
37276946--37277108	29	5.6	29	88	1	107	26	30	15	26	1.96
37276945--37277133	58	3.3	59	88	3	224	26	29	15	28	1.96
37277005--37277133	29	4.4	29	99	0	249	27	27	14	30	1.95
37284432--37284565	29	4.6	29	85	1	101	26	31	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37284431--37284590	58	2.7	59	86	3	200	25	30	16	27	1.96
37284491--37284590	29	3.4	29	100	0	200	27	28	15	30	1.96
37298102--37298252	40	3.8	40	75	15	134	27	23	26	23	2.00
37298138--37298268	40	3.3	40	79	6	158	25	22	27	24	2.00
37316595--37316695	28	3.5	28	86	6	114	29	26	13	29	1.94
37320869--37320927	29	2.0	29	100	0	118	59	3	23	13	1.50
37320869--37320950	29	2.8	29	89	7	96	60	3	24	10	1.46
37322198--37322227	13	2.3	13	94	0	51	90	0	10	0	0.47
37325033--37325061	12	2.3	13	94	5	51	82	0	0	17	0.66
37327448--37327474	14	1.9	14	100	0	54	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345