genome.fa.s12.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  134  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36254696--36254838	27	5.3	27	76	5	119	29	14	19	36	1.92
36254736--36254941	27	7.7	27	76	11	183	29	11	20	37	1.88
36254787--36254942	80	2.0	80	87	2	224	28	12	21	37	1.90
36258134--36258222	27	3.3	26	79	6	88	28	16	16	38	1.91
36258177--36258433	27	9.6	27	76	7	202	29	10	20	40	1.86
36258203--36258433	54	4.3	53	79	5	223	29	9	21	40	1.84
36258203--36258434	80	2.9	81	83	0	286	28	9	21	40	1.85
36258775--36258838	28	2.3	28	88	0	92	32	32	12	21	1.91
36260870--36260955	27	3.2	27	79	0	91	26	13	18	40	1.88
36260937--36261089	27	5.7	26	77	12	150	31	13	18	36	1.90
36260937--36261080	53	2.7	53	84	6	175	31	13	18	35	1.90
36263989--36264172	40	4.6	39	75	6	138	26	23	27	22	2.00
36264029--36264217	80	2.4	81	77	4	186	23	24	29	22	1.99
36272108--36272291	40	4.6	39	75	6	138	26	23	27	22	2.00
36272148--36272336	80	2.4	81	77	4	186	23	24	29	22	1.99
36292547--36292594	14	3.4	14	88	2	51	35	0	47	16	1.47
36292559--36292594	7	5.1	7	93	0	63	33	0	52	13	1.41
36294494--36294677	56	3.3	56	86	1	217	38	8	22	30	1.85
36294494--36294681	84	2.2	84	83	3	227	37	8	23	30	1.85
36294494--36294683	28	6.8	28	82	2	193	36	8	24	30	1.85
36300681--36300949	46	5.8	46	75	14	230	23	18	28	29	1.98
36300678--36300939	93	2.8	93	92	0	425	22	18	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36300727--36300895	47	3.6	47	79	10	220	23	19	28	28	1.98
36303774--36303853	15	5.4	15	75	12	76	11	18	12	57	1.64
36306333--36306378	20	2.3	20	92	0	74	15	17	34	32	1.91
36306342--36306380	20	2.0	20	100	0	78	15	10	35	38	1.81
36307694--36307833	27	5.2	27	84	0	163	27	25	6	40	1.80
36307694--36307837	54	2.7	54	87	0	198	27	24	6	40	1.80
36307869--36307964	27	3.6	27	81	8	124	40	19	8	31	1.81
36307827--36307965	54	2.6	53	73	16	126	38	20	10	30	1.86
36308095--36308172	27	2.9	27	77	11	88	39	20	17	21	1.92
36308869--36308925	20	2.9	21	87	10	77	38	8	19	33	1.82
36308975--36309175	26	7.8	26	86	0	280	25	22	24	27	2.00
36308976--36309175	78	2.6	78	92	1	332	25	23	24	27	2.00
36309393--36309560	31	5.4	31	94	0	282	29	16	26	28	1.96
36311811--36311954	27	5.3	27	82	3	164	27	22	10	39	1.86
36311811--36311954	54	2.7	54	84	2	182	27	22	10	39	1.86
36311946--36312109	27	6.1	27	75	7	127	40	20	9	28	1.84
36311986--36312166	54	3.3	54	77	6	168	42	19	7	30	1.78
36312087--36312172	27	3.1	27	73	17	86	40	16	8	34	1.78
36312996--36313062	20	3.3	20	89	4	100	40	10	17	31	1.84
36313111--36313233	26	4.8	26	83	5	128	26	23	22	26	2.00
36313111--36313233	51	2.4	50	85	8	158	26	23	22	26	2.00
36313453--36313622	31	5.5	31	89	0	268	31	16	23	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36313453--36313622	62	2.7	62	93	1	297	31	16	23	28	1.96
36320901--36321015	42	2.7	43	83	5	153	25	18	28	27	1.98
36320895--36321011	43	2.7	43	80	10	141	25	17	28	28	1.98
36323759--36323804	20	2.3	20	100	0	92	32	8	13	45	1.73
36325611--36325736	42	3.0	42	88	1	171	26	19	3	50	1.65
36327168--36327327	42	3.8	42	76	4	160	28	16	24	30	1.97
36330635--36330672	16	2.4	16	90	0	67	31	13	13	42	1.82
36345334--36345610	46	5.9	47	76	6	274	22	20	29	28	1.98
36345334--36345603	93	2.9	93	91	2	432	22	20	29	27	1.99
36345390--36345553	47	3.5	47	78	5	206	23	18	29	28	1.98
36352643--36352707	33	2.0	33	96	0	121	69	4	10	15	1.33
36352685--36352721	16	2.3	17	81	13	51	62	10	8	18	1.52
36358901--36358964	31	2.1	31	84	0	83	21	20	15	42	1.89
36359172--36359253	23	3.4	24	81	9	105	31	20	17	30	1.95
36359302--36359388	20	4.3	20	95	0	147	32	20	12	34	1.90
36359302--36359377	11	7.5	11	69	16	65	31	19	13	35	1.90
36361389--36361445	26	2.2	26	83	3	69	26	19	19	35	1.95
36370987--36371011	13	1.9	13	100	0	50	40	32	12	16	1.84
36385504--36385686	67	2.8	64	78	8	201	30	16	30	22	1.96
36386768--36386796	2	14.5	2	100	0	58	48	0	0	51	1.00
36392715--36392878	71	2.3	71	100	0	328	18	28	17	35	1.94
36392715--36392912	71	2.8	70	91	3	258	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36399075--36399238	71	2.3	71	100	0	328	18	28	17	35	1.94
36399075--36399272	71	2.8	70	91	3	258	20	28	17	33	1.95
36414493--36414742	40	6.2	40	91	1	385	22	28	24	25	1.99
36422597--36422846	40	6.2	40	91	1	385	22	28	24	25	1.99
36440805--36440874	27	2.5	28	93	2	115	27	14	28	30	1.95
36440805--36440886	27	3.0	27	84	8	69	28	15	25	30	1.96
36448740--36448809	27	2.5	28	93	2	115	27	14	28	30	1.95
36448740--36448821	27	3.0	27	84	8	69	28	15	25	30	1.96
36460388--36460453	27	2.4	27	73	11	64	46	16	9	27	1.77
36463139--36463302	71	2.3	71	97	0	310	18	28	18	34	1.95
36463139--36463336	71	2.8	70	90	3	249	20	28	17	32	1.96
36470633--36470793	69	2.3	71	96	3	301	19	28	18	34	1.95
36473912--36473942	13	2.4	13	94	0	53	61	12	6	19	1.53
36476270--36476454	40	4.7	40	87	6	227	25	26	22	25	2.00
36476237--36476454	79	2.7	79	80	11	250	25	26	22	26	2.00
36484230--36484455	40	5.7	40	89	4	282	25	26	22	25	2.00
36484230--36484455	80	2.8	80	87	6	316	25	26	22	25	2.00
36485754--36485832	40	2.0	40	100	0	158	17	26	25	30	1.97
36493021--36493089	24	2.8	25	82	8	88	33	15	20	30	1.94
36495065--36495286	40	5.7	40	85	7	278	23	22	28	25	1.99
36503674--36503841	40	4.2	40	79	12	166	23	22	27	26	1.99
36503674--36503841	80	2.1	79	85	4	221	23	22	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36506370--36506590	40	5.7	40	83	7	260	23	21	28	26	1.99
36506370--36506588	78	2.8	78	80	9	259	24	21	27	26	1.99
36506371--36506590	38	5.6	38	83	6	221	24	21	28	25	1.99
36517084--36517192	24	4.6	23	85	7	137	33	23	17	24	1.96
36517084--36517192	48	2.3	48	91	3	175	33	23	17	24	1.96
36524960--36525068	24	4.6	23	85	7	137	33	23	17	24	1.96
36524960--36525068	48	2.3	48	91	3	175	33	23	17	24	1.96
36528946--36528985	18	2.2	18	100	0	80	37	30	0	32	1.58
36531314--36531375	30	2.1	30	90	6	99	29	12	16	41	1.85
36532042--36532099	28	2.1	28	96	0	107	55	10	29	5	1.55
36538412--36538437	13	2.0	13	100	0	52	15	30	38	15	1.88
36540420--36540580	29	5.6	29	89	0	214	26	15	32	25	1.95
36548450--36548610	29	5.6	29	89	0	214	26	15	32	25	1.95
36556140--36556181	21	2.0	21	100	0	84	33	14	4	47	1.65
36556140--36556186	21	2.3	20	92	7	78	31	14	4	48	1.63
36560940--36561010	34	2.1	35	97	2	135	28	16	14	40	1.87
36566236--36566360	43	2.9	42	81	7	135	28	19	3	48	1.64
36570490--36570529	18	2.2	18	86	0	53	25	17	15	42	1.88
36571595--36571878	48	5.8	48	78	3	246	26	25	17	29	1.98
36571600--36571878	98	2.9	98	87	1	373	26	26	17	29	1.97
36573558--36573785	49	4.6	49	82	3	285	29	27	17	25	1.98
36576547--36576579	15	2.2	15	94	0	57	57	12	12	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36579683--36579907	49	4.5	49	77	5	254	30	26	17	25	1.98
36579683--36579801	50	2.4	49	88	1	166	31	29	14	25	1.95
36595456--36595838	49	7.9	49	93	2	630	33	9	27	29	1.88
36595455--36595838	96	4.0	96	95	1	660	33	9	28	29	1.88
36595455--36595838	145	2.6	145	93	3	664	33	9	28	29	1.88
36595830--36595933	48	2.2	48	98	0	199	33	5	27	32	1.81
36595973--36596100	37	3.4	37	95	1	229	24	18	32	25	1.97
36603963--36604019	17	3.4	17	75	20	57	33	1	0	64	1.04
36603975--36604022	18	2.7	18	81	15	64	35	2	0	62	1.07
36604147--36604181	17	2.1	17	94	0	61	34	8	0	57	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345