genome.fa.s12.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  146  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39859504--39859533	8	3.8	8	100	0	60	53	33	0	13	1.40
39860980--39861086	29	3.8	28	72	6	90	27	16	29	26	1.97
39869680--39870021	47	7.3	47	95	0	585	28	29	9	32	1.88
39873938--39873985	25	1.9	25	82	0	60	35	18	22	22	1.96
39882586--39882802	49	4.5	49	89	2	316	34	7	29	29	1.84
39895321--39895384	31	2.1	31	87	0	92	26	23	14	35	1.93
39895577--39895720	24	6.0	24	90	8	222	27	21	20	29	1.98
39895769--39895835	20	3.3	20	93	0	116	32	20	11	34	1.90
39895769--39895824	11	5.5	11	71	16	57	32	19	12	35	1.89
39897574--39897702	40	3.2	39	83	6	143	24	22	27	24	2.00
39899091--39899138	25	1.9	25	86	0	69	25	16	25	33	1.96
39902358--39902534	46	3.8	46	78	14	209	20	20	29	29	1.98
39902355--39902527	94	1.8	93	95	1	310	20	21	29	28	1.98
39909943--39910118	46	3.8	46	79	12	216	20	21	29	28	1.98
39909940--39910111	93	1.8	93	96	0	317	20	21	29	27	1.98
39912661--39912794	26	5.2	26	94	0	232	32	7	23	35	1.83
39913974--39914003	8	3.8	8	90	0	51	43	26	26	3	1.70
39914393--39914533	27	5.2	27	82	11	173	18	23	23	34	1.96
39914389--39914533	54	2.7	54	93	2	238	17	23	23	35	1.96
39914393--39914546	81	1.9	81	84	5	204	19	23	22	35	1.96
39928203--39928281	39	2.0	40	80	11	92	59	3	3	32	1.33
39937998--39938068	25	2.8	25	87	6	90	26	25	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39937997--39938095	25	4.0	23	79	12	81	28	24	21	26	1.99
39938288--39938370	30	2.7	31	90	3	134	31	20	26	21	1.98
39938288--39938365	31	2.6	30	93	2	129	30	21	26	20	1.98
39942095--39942155	24	2.5	24	97	0	113	21	18	24	36	1.95
39946829--39946899	25	2.8	25	93	2	115	25	22	22	29	1.99
39946828--39946912	25	3.4	25	81	16	90	28	21	23	27	1.99
39947121--39947203	30	2.7	31	88	3	125	31	19	26	22	1.98
39947121--39947198	31	2.6	30	91	2	120	30	20	26	21	1.98
39957579--39957686	54	2.0	55	85	5	148	23	29	27	19	1.98
39958695--39958735	21	2.0	21	90	0	64	39	19	24	17	1.92
39961704--39961892	40	4.7	40	87	2	263	25	26	21	25	2.00
39969718--39969906	40	4.7	40	91	2	308	24	26	22	26	2.00
39971787--39971844	30	1.9	30	82	6	73	13	31	32	22	1.93
39976037--39976065	14	2.0	15	93	6	51	68	6	13	10	1.37
39976284--39976358	28	2.5	31	69	24	70	74	0	8	17	1.04
39976303--39976349	13	3.5	13	78	13	51	74	0	6	19	1.03
39976286--39976349	27	2.4	28	87	10	89	73	0	7	18	1.07
39976290--39976349	21	3.0	20	79	18	70	73	0	8	18	1.08
39981813--39981870	25	2.3	25	82	11	66	65	1	10	22	1.32
39981813--39981896	26	3.4	25	72	21	70	67	1	10	20	1.27
39981864--39981902	18	2.2	18	85	0	51	74	0	7	17	1.05
39996656--39996713	30	1.9	30	82	6	73	12	25	36	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40001695--40001755	30	2.0	30	100	0	122	40	19	6	32	1.77
40002297--40002664	38	9.0	38	75	15	306	30	25	14	30	1.95
40002304--40002541	84	2.8	85	90	1	388	30	24	14	30	1.94
40002395--40002665	123	2.2	122	93	0	461	28	26	14	30	1.95
40003187--40003244	28	2.1	28	100	0	116	25	17	3	53	1.59
40004148--40004257	40	2.8	40	85	0	148	26	23	26	23	2.00
40007862--40007903	15	2.8	15	88	0	66	52	14	16	16	1.75
40009300--40009441	27	5.3	27	84	11	193	34	23	24	17	1.96
40009300--40009443	54	2.7	54	94	2	254	34	23	24	17	1.96
40009829--40009859	8	3.9	8	91	0	53	3	25	25	45	1.69
40014178--40014679	38	11.7	41	71	19	323	31	24	14	29	1.95
40014178--40014679	85	5.8	85	80	11	554	31	24	14	29	1.95
40014389--40014652	48	5.8	48	82	10	336	31	23	15	29	1.95
40014301--40014679	133	2.9	133	92	0	607	31	24	15	28	1.95
40017387--40017428	15	2.8	15	88	0	66	52	14	16	16	1.75
40020084--40020278	38	4.9	38	80	10	219	30	25	14	29	1.95
40026629--40026672	21	2.1	21	83	8	54	40	6	11	40	1.68
40036138--40036181	21	2.1	21	84	16	56	34	9	20	36	1.84
40036740--40036961	46	4.8	45	80	13	183	23	30	18	27	1.98
40041635--40041764	40	3.3	39	74	8	127	24	27	23	24	2.00
40041651--40041802	40	3.8	40	79	5	155	23	25	23	28	1.99
40041651--40041800	80	1.9	80	83	5	196	22	26	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40046338--40046505	40	4.2	40	79	1	158	22	27	23	26	2.00
40046354--40046503	80	1.9	80	84	5	205	21	27	24	26	1.99
40050809--40051077	46	5.7	48	74	10	175	21	31	19	27	1.97
40050811--40051074	140	1.9	140	81	10	324	21	30	19	28	1.98
40054010--40054184	39	4.5	38	85	4	176	28	24	20	26	1.99
40054026--40054184	78	2.0	78	88	0	237	28	23	20	27	1.99
40078793--40078825	16	2.1	16	94	0	57	39	9	12	39	1.74
40081519--40081602	28	3.0	27	84	8	105	19	4	29	46	1.70
40095001--40095060	30	2.0	30	96	0	111	25	20	25	30	1.99
40095475--40095581	43	2.5	43	80	4	119	28	26	19	25	1.99
40102841--40102991	43	3.6	41	75	9	124	27	26	19	26	1.99
40106435--40106466	12	2.7	12	100	0	64	43	0	6	50	1.27
40108100--40108131	12	2.7	12	95	0	55	53	0	0	46	1.00
40111870--40111904	18	1.9	18	88	0	52	31	5	22	40	1.78
40112392--40112431	21	1.9	21	84	0	53	35	10	20	35	1.86
40118274--40118427	43	3.6	42	78	10	170	23	18	27	29	1.98
40118274--40118427	84	1.8	84	82	8	197	23	18	27	29	1.98
40120845--40120913	9	7.4	10	76	22	53	69	1	1	27	1.05
40120929--40120998	28	2.5	29	81	9	83	57	1	1	40	1.17
40121258--40121308	8	6.1	8	82	10	50	39	0	0	60	0.97
40121258--40121330	28	2.7	27	83	10	87	35	1	1	61	1.13
40121278--40121322	19	2.4	19	85	10	58	40	0	2	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40123572--40123631	29	2.1	29	100	0	120	41	10	6	41	1.65
40126996--40127082	37	2.3	36	94	5	147	26	33	19	20	1.97
40127131--40127228	49	2.0	49	85	4	133	30	30	7	31	1.84
40127196--40127253	18	3.3	18	70	18	59	37	29	0	32	1.58
40127151--40127545	49	8.4	49	81	10	405	30	28	7	32	1.86
40127194--40127262	34	2.0	34	97	0	129	37	30	0	31	1.58
40127146--40127311	83	2.0	84	92	2	280	33	29	4	31	1.79
40127229--40127545	98	3.2	98	91	0	499	30	28	8	32	1.87
40127229--40127545	147	2.2	147	91	0	517	30	28	8	32	1.87
40130108--40130202	28	3.5	28	78	11	108	25	21	14	38	1.91
40132836--40133006	93	1.8	93	96	0	315	27	29	22	20	1.98
40132828--40133008	46	3.9	46	81	9	233	27	29	21	20	1.98
40147871--40147954	21	4.1	21	75	6	66	20	7	0	72	1.07
40147915--40147957	15	2.8	15	83	13	52	18	2	0	79	0.85
40152615--40152697	27	3.0	27	87	1	112	19	25	18	37	1.94
40156995--40157087	46	2.0	46	100	0	186	19	33	27	19	1.96
40158557--40158590	8	4.1	8	96	3	59	61	23	0	14	1.33
40162270--40162315	22	2.1	22	100	0	92	52	17	8	21	1.71
40170544--40170606	30	2.1	30	82	5	74	30	25	26	17	1.97
40173473--40173526	20	2.6	21	88	11	85	20	11	16	51	1.74
40177430--40177580	40	3.8	40	77	13	134	27	23	26	22	2.00
40177466--40177596	40	3.3	40	79	2	156	25	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40185417--40185565	80	1.9	79	84	6	203	26	24	27	21	1.99
40185415--40185581	40	4.2	40	77	6	162	26	23	26	22	2.00
40185415--40185581	80	2.1	79	81	7	196	26	23	26	22	2.00
40191733--40191883	40	3.8	40	77	13	134	27	23	26	22	2.00
40191769--40191899	40	3.3	40	79	2	156	25	23	27	23	2.00
40195363--40195409	8	5.8	8	76	14	51	0	17	0	82	0.66
40202959--40203034	31	2.5	31	86	0	125	38	15	21	25	1.92
40204562--40204785	47	4.8	46	77	8	186	27	20	29	23	1.98
40209597--40209623	14	1.9	14	100	0	54	29	3	14	51	1.60
40214042--40214087	24	1.9	24	86	8	67	43	2	30	23	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345