genome.fa.s12.2.7.7.80.10.50.1000.236.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  236  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69375306--69375351	20	2.3	20	85	3	67	28	26	17	28	1.98
69381008--69381055	24	2.0	24	84	8	62	31	0	22	45	1.53
69382932--69383008	38	2.0	38	100	0	154	32	5	12	49	1.63
69383652--69383789	55	2.5	54	78	1	150	37	19	22	20	1.94
69383646--69383852	53	3.8	53	75	4	182	37	17	23	21	1.94
69393206--69393351	51	2.9	49	83	4	193	27	26	19	26	1.99
69395615--69395706	46	2.0	46	97	0	175	33	23	14	28	1.94
69401923--69401962	21	1.9	21	84	0	53	57	0	15	27	1.38
69403007--69403165	40	4.0	40	86	6	200	27	27	22	22	1.99
69403007--69403165	80	2.0	80	86	4	223	27	27	22	22	1.99
69405635--69405659	13	1.9	13	100	0	50	16	40	28	16	1.89
69408789--69408819	3	10.0	3	93	6	53	67	0	0	32	0.91
69411987--69412153	42	4.0	42	83	3	210	22	17	29	30	1.97
69411988--69412153	84	2.0	84	86	2	235	22	18	28	30	1.97
69412223--69412285	32	2.0	32	87	0	90	33	6	28	31	1.82
69417353--69417472	37	3.2	37	97	0	222	21	34	18	25	1.96
69417576--69417692	49	2.4	49	94	0	198	28	31	10	29	1.90
69420417--69420515	41	2.4	41	77	11	105	25	23	24	27	2.00
69420999--69421336	29	11.7	29	97	0	586	25	33	16	25	1.96
69421846--69421979	51	2.7	51	84	2	191	32	18	17	31	1.95
69425309--69425471	46	3.5	46	74	5	159	29	26	20	22	1.99
69428176--69428232	30	1.9	29	92	3	96	56	15	15	12	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69434674--69434776	29	3.6	28	80	5	116	29	33	16	21	1.95
69441261--69441298	20	1.9	19	85	15	51	47	2	0	50	1.15
69445066--69445098	3	11.0	3	93	0	57	30	0	0	69	0.88
69446239--69446288	3	17.0	3	95	4	93	32	0	0	68	0.90
69457615--69457649	2	17.5	2	93	0	61	54	0	0	45	0.99
69459653--69459713	30	2.0	30	83	0	77	31	22	8	37	1.84
69469077--69469111	18	1.9	18	88	0	52	51	28	0	20	1.47
69474114--69474139	11	2.4	11	100	0	52	50	0	7	42	1.31
69474577--69474671	20	4.8	20	73	0	64	33	16	23	26	1.96
69474460--69474675	40	5.4	40	81	1	191	36	19	20	23	1.95
69478602--69478631	8	3.9	8	95	4	53	60	0	0	40	0.97
69478592--69478638	15	3.3	15	77	16	55	59	0	0	40	0.97
69478710--69478784	33	2.3	32	84	11	91	46	2	1	49	1.24
69481290--69481353	21	3.0	20	81	6	65	62	7	0	29	1.23
69483840--69483915	38	2.0	38	100	0	152	31	5	23	39	1.77
69484231--69484308	33	2.3	35	84	8	108	24	6	7	61	1.47
69493154--69493184	12	2.5	13	94	5	55	22	6	0	70	1.09
69500394--69500426	17	2.0	17	94	5	59	36	15	0	48	1.45
69500707--69501439	46	16.0	46	91	0	1119	21	23	14	40	1.90
69505451--69505499	21	2.2	24	82	10	59	38	16	18	26	1.91
69517949--69518303	184	1.9	184	80	3	410	40	17	13	29	1.88
69523377--69523476	47	2.2	45	83	8	121	46	15	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69525215--69525248	9	3.7	9	88	4	50	8	0	38	52	1.33
69527009--69527039	16	1.9	16	93	0	53	9	16	9	64	1.48
69529319--69529449	30	4.5	30	86	8	171	32	13	25	28	1.94
69529319--69529449	58	2.2	58	86	4	174	32	13	25	28	1.94
69537269--69537399	30	4.5	30	86	8	171	32	13	25	28	1.94
69537269--69537399	58	2.2	58	86	4	174	32	13	25	28	1.94
69538932--69538961	14	2.1	14	93	0	51	56	6	10	26	1.57
69541842--69542336	48	10.7	48	89	6	729	34	7	26	31	1.85
69541842--69542336	94	5.3	95	88	6	705	34	7	26	31	1.85
69542381--69542465	37	2.3	37	93	2	145	22	20	34	23	1.97
69544354--69544600	40	6.3	40	89	3	385	25	20	27	25	1.99
69548432--69548894	48	9.7	48	93	0	748	34	7	26	31	1.85
69548939--69549024	37	2.3	37	95	0	154	22	19	34	23	1.96
69553585--69553831	40	6.0	40	90	2	334	23	19	28	27	1.99
69572680--69572775	42	2.3	43	80	10	108	30	20	18	30	1.97
69573348--69573378	15	2.1	15	100	0	62	45	32	0	22	1.53
69575998--69576127	40	3.2	40	84	4	174	23	29	24	22	1.99
69583644--69583686	22	2.0	21	86	4	59	41	25	4	27	1.75
69591550--69591583	16	2.1	17	94	5	61	79	8	0	11	0.94
69595356--69595405	23	2.2	23	96	0	91	20	28	6	46	1.74
69597988--69598044	26	2.1	27	87	3	80	35	17	21	26	1.95
69606613--69606744	29	4.6	29	94	0	219	25	32	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69606584--69606744	58	2.8	58	88	0	187	25	33	15	25	1.95
69606584--69606744	87	1.9	87	85	0	223	25	33	15	25	1.95
69614652--69614754	29	3.6	29	91	0	161	25	33	15	26	1.95
69614623--69614754	58	2.3	58	83	0	165	25	34	15	25	1.95
69617121--69617177	26	2.2	26	83	3	69	36	17	19	26	1.94
69620754--69620817	34	1.9	33	84	6	85	28	21	20	29	1.98
69621098--69621149	26	2.0	26	88	3	77	36	15	15	32	1.89
69622562--69622664	50	2.1	50	92	0	170	30	38	0	31	1.58
69625698--69625731	2	17.0	2	87	0	50	50	0	5	44	1.26
69633616--69633642	2	13.5	2	100	0	54	51	0	0	48	1.00
69637993--69638145	38	4.0	38	94	1	252	22	20	23	33	1.97
69642465--69642513	17	2.8	18	74	22	50	24	18	22	34	1.96
69643332--69643498	40	4.2	40	78	6	160	25	22	27	24	2.00
69650450--69650498	17	2.8	18	74	22	50	24	18	22	34	1.96
69651316--69651482	40	4.2	40	79	6	169	25	21	27	25	1.99
69660203--69660327	63	2.0	63	93	0	214	32	21	9	36	1.86
69661385--69661422	19	2.0	20	85	15	53	39	23	0	36	1.55
69662194--69662252	29	2.0	29	86	3	82	33	23	5	37	1.77
69667261--69667428	40	4.2	40	79	1	158	22	27	23	26	2.00
69667277--69667426	80	1.9	80	84	5	205	21	27	24	26	1.99
69675274--69675424	40	3.8	39	84	2	151	23	27	23	26	2.00
69675274--69675424	80	1.9	79	83	6	198	23	27	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69679269--69679426	40	4.0	40	79	4	151	26	24	26	22	2.00
69679269--69679456	80	2.3	80	79	12	206	26	23	27	22	2.00
69681706--69681753	24	2.0	24	95	0	87	45	6	20	27	1.75
69689835--69689940	35	3.0	35	85	1	122	29	14	13	43	1.83
69689867--69689959	35	2.7	35	88	3	125	30	17	15	37	1.90
69696213--69696794	47	12.4	47	93	0	930	33	8	29	28	1.86
69698455--69699263	40	20.2	40	95	0	1386	23	19	28	27	1.98
69699295--69699394	28	3.5	28	77	8	94	22	17	29	32	1.96
69702852--69703433	47	12.4	47	93	0	948	34	8	29	27	1.87
69706403--69706485	30	2.8	30	90	3	123	42	31	13	13	1.82
69708071--69708278	48	4.4	48	74	8	154	28	20	28	22	1.98
69708164--69708394	96	2.4	96	82	1	275	29	20	29	21	1.98
69708164--69708389	48	4.7	48	71	4	152	29	20	28	21	1.98
69708061--69708345	144	2.0	143	80	4	324	27	19	30	22	1.98
69711051--69711246	53	3.6	54	77	3	162	20	24	17	37	1.94
69713673--69713840	24	7.0	24	91	2	248	27	20	22	29	1.98
69713890--69713956	20	3.3	20	89	0	107	31	20	13	34	1.92
69713890--69713945	11	5.5	11	75	16	66	30	19	14	35	1.91
69722423--69722649	47	4.7	47	87	7	296	29	31	7	31	1.84
69722423--69722649	96	2.4	96	88	5	329	29	31	7	31	1.84
69732310--69732334	12	2.1	12	100	0	50	8	24	40	28	1.83
69746001--69746047	22	2.1	22	100	0	94	21	23	12	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69757127--69757151	5	5.0	5	100	0	50	20	0	0	80	0.72
69768381--69768547	46	3.7	45	84	4	194	26	20	31	22	1.98
69768330--69768541	92	2.3	90	82	4	246	26	19	31	21	1.98
69768381--69768584	46	4.5	43	80	11	162	25	20	30	23	1.98
69774468--69774634	46	3.7	45	84	4	194	26	20	31	22	1.98
69774417--69774628	92	2.3	90	82	4	246	26	19	31	21	1.98
69774468--69774671	46	4.5	43	80	11	162	25	20	30	23	1.98
69782708--69782838	30	4.5	30	86	8	171	32	13	25	28	1.94
69782708--69782838	58	2.2	58	86	4	174	32	13	25	28	1.94
69784667--69784695	12	2.4	12	100	0	58	13	17	51	17	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345