genome.fa.s12.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  154  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42287302--42287439	42	3.2	43	82	7	138	26	24	20	28	1.99
42290154--42290218	34	1.9	34	90	3	105	26	23	26	24	2.00
42290154--42290225	33	2.1	34	87	2	101	27	22	25	25	2.00
42297980--42298044	33	1.9	34	90	3	105	26	24	24	24	2.00
42299364--42299389	7	3.7	7	100	0	52	15	53	0	30	1.42
42310989--42311118	40	3.3	39	76	8	136	23	27	23	24	2.00
42311005--42311156	40	3.8	40	78	6	148	22	26	23	27	1.99
42311005--42311154	80	1.9	80	83	8	198	22	26	24	27	1.99
42318985--42319111	40	3.2	39	76	8	130	22	28	24	24	2.00
42327196--42327287	28	3.3	28	96	1	168	34	27	7	30	1.85
42327393--42327482	27	3.2	28	81	7	112	18	24	24	32	1.97
42327403--42327493	27	3.2	28	81	4	94	20	26	20	31	1.98
42327393--42327507	55	2.1	56	82	8	137	18	24	22	34	1.96
42328560--42328593	10	3.3	10	84	8	50	29	8	8	52	1.62
42335078--42335170	28	3.3	28	92	3	152	35	26	7	30	1.84
42335286--42335364	27	2.8	28	80	5	97	21	25	20	32	1.97
42335286--42335376	27	3.2	28	76	7	87	21	26	19	31	1.98
42335286--42335390	55	1.9	56	80	9	126	20	24	20	35	1.96
42341251--42341351	28	3.5	28	86	6	114	29	26	13	29	1.94
42343441--42343604	40	4.1	40	81	12	176	22	22	29	25	1.99
42343441--42343604	80	2.1	79	87	4	231	22	22	29	25	1.99
42346183--42346208	12	2.2	12	100	0	52	34	7	7	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42350540--42350714	40	4.4	40	88	3	246	23	23	28	24	1.99
42356769--42356909	40	3.5	40	87	2	196	24	30	21	23	1.99
42361760--42362016	40	6.5	40	87	4	326	22	22	28	25	1.99
42364685--42364928	59	4.2	59	89	1	364	21	17	30	30	1.96
42364685--42364928	117	2.1	118	89	2	366	21	17	30	30	1.96
42376401--42376492	25	3.7	25	83	0	112	31	20	20	27	1.98
42376836--42376898	31	2.0	31	100	0	126	38	6	15	39	1.73
42377628--42377709	42	2.0	41	87	2	119	20	19	35	24	1.96
42386727--42386829	29	3.6	27	81	5	98	29	33	16	21	1.95
42390948--42391005	29	2.0	29	93	0	98	32	15	17	34	1.91
42391151--42391307	43	3.7	43	72	7	122	31	24	17	26	1.97
42399501--42399660	29	5.5	29	82	4	180	26	16	31	25	1.97
42407453--42407612	29	5.5	29	82	4	180	26	16	31	25	1.97
42409635--42409769	43	3.1	44	73	16	122	32	25	17	24	1.96
42412840--42412907	28	2.5	28	92	4	113	19	10	27	42	1.83
42414698--42414741	19	2.4	18	85	7	54	40	9	0	50	1.34
42417084--42417151	28	2.5	28	92	4	113	19	10	27	42	1.83
42418941--42418984	19	2.4	18	85	7	54	40	9	0	50	1.34
42429358--42429396	17	2.3	17	95	0	69	58	12	5	23	1.54
42439712--42440072	49	7.4	49	95	1	582	28	9	32	29	1.88
42440174--42440258	37	2.3	37	93	0	143	24	18	34	22	1.96
42442666--42442777	25	4.5	25	83	0	125	32	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42446713--42446866	28	5.5	28	88	0	191	27	20	20	31	1.97
42446713--42446867	84	1.8	84	84	0	211	28	20	20	31	1.97
42457532--42457732	42	4.6	41	73	11	170	28	17	22	30	1.97
42460570--42460735	43	3.9	42	75	6	147	32	24	15	27	1.95
42461217--42461276	29	2.1	29	84	6	77	31	23	1	43	1.64
42461289--42461326	19	2.0	19	100	0	76	52	15	5	26	1.64
42471041--42471092	25	2.1	25	100	0	104	38	11	7	42	1.70
42473966--42474015	13	3.7	14	76	10	50	48	2	0	50	1.12
42479934--42480093	29	5.5	30	88	8	213	26	25	14	33	1.94
42479934--42480093	59	2.8	57	88	4	214	26	25	14	33	1.94
42487979--42488138	29	5.5	30	88	8	213	26	25	14	33	1.94
42487979--42488138	59	2.8	57	88	4	214	26	25	14	33	1.94
42495827--42495861	17	2.2	15	90	10	52	34	34	0	31	1.58
42496031--42496190	29	5.5	30	88	8	213	26	25	14	33	1.94
42496031--42496190	59	2.8	57	88	4	214	26	25	14	33	1.94
42504087--42504246	29	5.5	30	88	8	213	26	25	14	33	1.94
42504087--42504246	59	2.8	57	88	4	214	26	25	14	33	1.94
42517762--42517893	46	2.9	46	91	0	210	25	30	9	35	1.87
42517917--42518157	47	5.1	47	90	2	385	26	28	11	34	1.91
42517967--42518087	22	5.2	22	67	21	77	26	29	12	31	1.93
42520992--42521390	40	10.0	40	90	1	629	26	29	21	22	1.99
42522871--42523002	46	2.9	46	90	0	201	25	30	8	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42523026--42523266	47	5.1	47	94	0	419	25	28	12	34	1.92
42523123--42523245	22	5.3	22	64	27	67	25	29	13	31	1.94
42529493--42529595	43	2.4	43	84	7	122	25	18	24	32	1.97
42530820--42530856	17	2.2	17	95	0	65	32	24	18	24	1.97
42533959--42534083	40	3.1	40	89	4	182	28	21	25	24	1.99
42538767--42538932	47	3.5	47	97	0	314	32	9	28	29	1.89
42538819--42538894	22	3.3	22	64	10	62	30	11	30	27	1.92
42538910--42539181	48	5.7	48	91	0	427	35	6	25	32	1.82
42539226--42539334	37	2.9	37	93	0	173	22	20	32	25	1.98
42541573--42541717	43	3.4	42	81	4	148	25	17	22	33	1.96
42547195--42547297	29	3.6	28	80	5	116	29	33	16	21	1.95
42554166--42554268	29	3.6	28	80	5	116	29	33	16	21	1.95
42561319--42561458	44	3.3	43	81	7	158	23	16	25	35	1.95
42561600--42561653	26	2.1	26	92	0	90	42	5	9	42	1.60
42571536--42571702	40	4.2	40	82	2	185	24	26	22	26	2.00
42579543--42579709	40	4.2	40	82	2	185	24	26	22	26	2.00
42587045--42587094	22	2.3	22	96	0	91	34	30	12	24	1.91
42592429--42592592	40	4.1	40	84	1	195	23	21	28	26	1.99
42595755--42595828	38	1.9	38	100	0	148	33	24	16	25	1.95
42604812--42604857	24	1.9	24	82	8	58	23	17	13	45	1.83
42605710--42605924	46	4.6	46	73	14	172	30	17	28	23	1.97
42605756--42605977	93	2.4	94	78	12	224	30	18	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42612499--42612627	46	2.8	46	83	3	161	31	24	23	21	1.99
42628942--42628978	2	18.5	2	100	0	74	48	0	0	51	1.00
42629029--42629094	3	22.0	3	96	0	123	65	0	1	33	1.02
42632333--42632368	2	18.0	2	100	0	72	50	0	0	50	1.00
42633253--42633304	26	2.0	26	100	0	104	26	3	11	57	1.51
42633253--42633296	12	3.2	15	69	24	51	29	4	11	54	1.56
42633636--42633778	11	12.7	11	67	15	60	65	4	4	26	1.30
42633895--42633938	21	2.1	21	95	0	79	27	4	2	65	1.23
42643354--42643528	46	3.8	45	81	7	208	28	29	21	21	1.99
42643362--42643533	93	1.8	93	93	0	299	27	29	21	21	1.99
42643359--42643548	46	4.1	46	73	14	149	28	28	21	21	1.98
42649142--42649210	31	2.2	31	86	0	102	31	7	13	47	1.69
42656527--42656599	29	2.5	29	97	0	137	32	15	27	24	1.95
42656586--42656658	29	2.5	29	84	0	92	28	17	26	27	1.98
42664476--42664544	29	2.4	29	100	0	138	33	14	27	24	1.94
42673575--42673673	28	3.5	29	86	4	114	31	26	14	28	1.95
42675497--42675542	17	2.7	18	77	12	53	34	0	10	54	1.36
42676140--42676164	11	2.3	11	100	0	50	92	0	8	0	0.40
42681837--42681955	40	3.0	40	81	4	159	26	27	21	23	1.99
42689313--42689371	28	2.1	28	96	0	109	32	22	11	33	1.90
42694244--42694299	26	2.2	26	87	6	78	17	46	23	12	1.82
42696997--42697034	16	2.5	15	84	12	51	39	18	2	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42698349--42698395	24	2.0	24	95	0	85	42	25	4	27	1.73
42703672--42703824	39	3.9	39	92	0	252	23	20	32	23	1.98
42703673--42703854	39	4.6	39	89	0	247	23	21	31	23	1.98
42711755--42711907	39	3.9	39	92	0	252	23	20	32	23	1.98
42711756--42711937	39	4.6	39	89	0	247	23	21	31	23	1.98
42713633--42713695	24	2.6	24	100	0	126	34	26	17	20	1.95
42721456--42721636	24	7.6	23	87	6	227	35	24	16	23	1.95
42721456--42721636	48	3.8	48	94	1	301	35	24	16	23	1.95
42721478--42721636	72	2.2	72	96	0	291	36	25	16	22	1.94
42723755--42723857	29	3.6	28	81	5	116	21	16	33	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345