genome.fa.s12.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  228  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66432540--66432778	47	5.1	47	93	3	383	28	20	22	28	1.98
66432519--66432779	71	3.7	72	91	5	406	27	21	22	28	1.99
66432837--66432893	9	5.9	9	73	15	51	35	21	8	35	1.84
66432833--66432895	20	3.2	20	95	0	117	31	19	12	36	1.89
66434137--66434230	27	3.5	26	90	7	136	21	25	20	32	1.97
66434286--66434772	27	18.0	27	76	10	129	35	9	20	34	1.85
66434462--66434672	54	3.9	54	85	7	277	38	9	24	27	1.85
66434462--66434672	81	2.6	81	85	5	268	38	9	24	27	1.85
66437556--66437816	24	11.0	24	90	5	397	27	21	22	28	1.99
66437577--66437815	47	5.1	47	94	2	383	28	20	22	28	1.99
66437556--66437815	71	3.6	71	92	3	409	27	21	22	28	1.99
66437874--66437930	9	5.9	9	73	15	51	35	21	8	35	1.84
66437870--66437932	20	3.2	20	95	0	117	31	19	12	36	1.89
66437969--66438016	25	2.0	24	87	4	69	25	16	25	33	1.96
66439175--66439268	27	3.5	26	90	7	136	21	25	20	32	1.97
66439324--66439811	27	18.0	27	76	9	136	35	9	21	34	1.85
66439297--66439522	54	4.1	54	74	6	195	32	8	20	38	1.83
66439501--66439711	54	3.9	54	85	7	277	38	9	24	27	1.85
66439501--66439711	81	2.6	81	85	5	268	38	9	24	27	1.85
66441966--66442036	29	2.4	29	97	0	133	30	15	26	26	1.96
66441966--66442096	29	4.5	29	83	3	106	27	16	30	25	1.97
66450960--66451140	40	4.6	40	90	2	267	22	21	30	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66462774--66462823	27	1.9	26	84	8	66	34	6	10	50	1.60
66469774--66469807	17	2.0	17	88	0	50	58	8	2	29	1.43
66470098--66470176	25	3.2	25	80	7	97	32	18	16	31	1.94
66475619--66475759	40	3.5	39	81	6	133	27	25	27	19	1.99
66475653--66475780	40	3.2	40	81	4	152	24	25	27	23	2.00
66481674--66481860	48	3.9	49	80	3	209	25	29	19	24	1.98
66481675--66481850	96	1.8	96	86	4	257	24	30	20	25	1.99
66492106--66492233	55	2.3	55	81	5	150	27	26	28	17	1.98
66496535--66496571	14	2.8	13	88	11	58	21	5	10	62	1.48
66504820--66505079	96	2.7	96	83	5	312	23	29	19	26	1.98
66504822--66505088	48	5.6	48	76	10	251	23	29	19	27	1.98
66508715--66508763	23	2.1	23	88	0	71	30	24	24	20	1.98
66511196--66511258	31	2.1	31	93	3	110	25	12	7	53	1.65
66513975--66514072	28	3.5	28	84	4	108	29	16	24	29	1.96
66521648--66521745	28	3.5	28	84	4	108	29	16	24	29	1.96
66523754--66523795	3	14.0	3	94	0	75	64	0	2	33	1.07
66524720--66524779	25	2.4	25	88	2	95	46	10	5	38	1.59
66536476--66536618	73	2.0	73	98	0	277	27	16	21	34	1.94
66542189--66542228	8	5.0	8	82	11	55	65	2	0	32	1.06
66545965--66545989	12	2.1	12	100	0	50	36	32	16	16	1.90
66551518--66551665	48	3.1	48	95	1	264	34	6	28	31	1.81
66551802--66551904	37	2.8	37	92	0	170	23	20	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66555797--66555854	30	2.0	29	93	3	98	27	12	27	32	1.92
66556198--66556374	46	3.8	46	79	8	171	27	20	29	22	1.98
66556203--66556374	47	3.7	47	78	10	167	27	20	29	22	1.98
66556200--66556374	94	1.9	94	85	4	246	27	20	29	22	1.98
66561839--66561971	67	2.0	67	86	0	185	21	16	31	30	1.95
66563615--66563714	27	3.5	28	89	5	130	32	28	13	27	1.93
66565901--66566018	41	3.1	41	60	28	98	32	17	28	21	1.96
66565869--66566032	71	2.3	71	100	0	328	35	17	28	18	1.94
66569796--66569939	39	3.7	39	92	0	243	26	20	29	22	1.99
66569797--66569979	78	2.3	79	90	1	278	24	22	29	23	1.99
66577244--66577387	39	3.7	39	92	0	243	26	20	29	22	1.99
66577245--66577426	78	2.3	79	90	0	276	24	22	29	23	1.99
66585120--66585224	53	2.0	53	84	0	138	20	25	18	35	1.95
66595165--66595206	20	2.1	20	86	0	57	66	2	2	28	1.16
66595722--66595790	29	2.3	29	82	2	84	34	4	10	50	1.56
66596990--66597159	89	1.9	89	84	7	229	48	4	7	40	1.51
66598800--66599014	111	1.9	111	85	0	295	16	22	17	42	1.88
66605204--66605429	40	5.7	40	89	2	330	18	19	27	34	1.95
66609490--66609519	11	2.7	11	89	0	51	30	6	6	56	1.51
66609770--66609829	3	20.3	3	96	3	113	33	0	0	66	0.92
66615514--66615551	16	2.4	16	90	0	58	84	0	15	0	0.63
66615873--66615975	53	1.9	53	92	0	170	21	15	6	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66616375--66616614	46	5.2	46	85	3	304	33	16	26	23	1.95
66626954--66627244	46	6.5	46	67	8	150	32	20	16	29	1.95
66626823--66627310	178	2.7	179	86	2	660	32	20	17	29	1.96
66628747--66628776	11	2.7	11	89	0	51	30	6	6	56	1.51
66629030--66629082	3	17.7	3	100	0	106	32	0	0	67	0.91
66636596--66636768	87	2.0	87	97	0	328	34	25	17	23	1.96
66641031--66641360	48	6.8	48	79	4	308	24	26	19	28	1.99
66641034--66641366	144	2.3	144	85	5	440	24	27	19	28	1.98
66641088--66641366	48	5.8	48	83	0	317	25	27	17	28	1.98
66642391--66642433	22	2.0	22	85	0	59	44	9	11	34	1.73
66642400--66642433	11	3.1	11	95	0	59	44	11	8	35	1.72
66643959--66644001	22	2.0	22	86	8	63	60	4	4	30	1.37
66649545--66649573	14	2.0	15	93	6	51	55	6	0	37	1.27
66650007--66650077	30	2.3	31	80	9	83	70	5	4	19	1.24
66653011--66653143	46	2.8	49	79	16	172	29	28	20	21	1.98
66653019--66653159	46	3.0	44	78	14	144	29	28	19	22	1.98
66682114--66682174	30	2.0	30	83	0	77	31	22	8	37	1.84
66696854--66696974	57	2.1	59	84	6	158	48	4	18	28	1.68
66698095--66698145	18	3.0	18	80	11	63	49	0	0	50	1.00
66698098--66698145	17	2.9	15	82	17	60	50	0	0	50	1.00
66700183--66700231	25	2.0	25	91	0	80	18	28	20	32	1.96
66700173--66700239	25	2.7	24	77	11	73	17	28	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66706259--66706306	25	1.9	25	86	0	69	33	25	16	25	1.96
66706350--66706408	20	3.0	20	97	0	109	37	10	20	32	1.86
66706354--66706408	11	5.4	11	70	16	55	38	10	20	30	1.87
66706459--66706611	24	6.4	24	94	2	245	30	22	21	26	1.99
66707921--66708084	71	2.3	71	100	0	328	18	28	17	35	1.94
66707921--66708118	71	2.8	70	91	3	258	20	28	17	33	1.95
66709585--66709648	31	2.1	31	96	0	119	39	15	21	23	1.92
66711965--66712082	41	3.1	41	60	28	98	32	17	28	21	1.96
66711933--66712096	71	2.3	71	100	0	328	35	17	28	18	1.94
66716669--66716707	20	2.0	20	89	0	60	23	23	30	23	1.99
66718455--66718662	79	2.6	80	78	6	190	24	30	23	22	1.99
66718555--66718662	40	2.7	40	86	0	135	21	30	25	23	1.99
66726423--66726630	79	2.6	80	78	6	190	24	30	23	22	1.99
66726523--66726630	40	2.7	40	86	0	135	21	30	25	23	1.99
66730559--66730589	16	1.9	16	93	0	53	35	22	0	41	1.54
66730556--66730595	20	2.0	20	85	0	53	37	22	0	40	1.54
66730820--66731035	55	4.0	54	80	7	251	22	25	16	35	1.94
66730828--66731028	108	1.8	110	88	4	309	22	25	16	34	1.95
66735565--66735594	15	2.0	15	93	0	51	20	16	13	50	1.78
66740065--66740285	40	5.6	40	91	2	349	22	23	26	28	1.99
66740065--66740285	79	2.8	80	93	3	367	22	23	26	28	1.99
66740065--66740285	119	1.9	119	94	1	390	22	23	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66751583--66751763	40	4.6	40	90	2	278	22	22	27	27	1.99
66754179--66754230	20	2.6	20	76	11	61	48	1	15	34	1.56
66755916--66756212	140	2.1	140	94	0	513	32	26	21	19	1.97
66758267--66758427	71	2.3	71	86	2	234	17	26	19	36	1.94
66765780--66765939	70	2.3	71	85	3	225	17	26	20	35	1.94
66769153--66769247	44	2.2	42	83	7	111	26	17	23	32	1.97
66769220--66769317	43	2.3	42	77	3	97	22	16	26	34	1.95
66769227--66769310	43	2.0	43	82	0	105	23	16	25	34	1.95
66781723--66781792	27	2.5	28	97	2	133	28	12	27	31	1.93
66789632--66789701	27	2.5	28	97	2	133	28	12	27	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345