genome.fa.s12.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  158  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43749822--43750025	27	7.6	27	89	0	291	33	20	21	25	1.97
43749795--43750015	54	4.1	54	86	2	284	34	19	19	27	1.96
43749740--43750025	81	3.5	82	85	3	305	36	20	17	26	1.94
43750675--43750768	27	3.6	27	81	9	106	20	23	19	37	1.94
43750693--43750794	27	3.8	27	83	5	107	19	22	20	37	1.95
43750675--43750776	54	1.9	52	86	4	141	19	22	20	37	1.95
43750941--43750998	19	3.4	19	65	30	58	18	17	17	46	1.84
43750953--43751008	6	9.2	6	75	11	51	19	16	16	48	1.82
43750938--43751008	31	2.3	31	100	0	142	18	15	15	50	1.78
43752412--43752557	37	3.9	37	95	0	247	26	31	19	22	1.98
43752766--43752864	47	2.1	47	80	0	108	28	28	9	34	1.87
43759093--43759170	22	3.3	22	66	19	57	32	23	16	28	1.96
43762454--43762565	49	2.3	49	80	4	131	31	21	24	23	1.98
43764719--43764758	19	2.1	19	86	9	55	2	20	0	77	0.88
43769048--43769122	26	3.2	26	61	28	67	8	29	1	61	1.33
43769059--43769133	20	3.5	20	72	19	71	9	32	1	57	1.39
43769042--43769127	44	2.0	44	100	0	172	9	30	2	58	1.42
43771871--43771910	19	2.1	19	100	0	80	25	20	20	35	1.96
43776810--43776946	50	2.8	49	89	3	211	27	19	25	27	1.99
43778607--43778903	40	7.5	40	87	4	379	25	27	23	23	2.00
43791027--43791080	22	2.4	23	96	3	101	59	7	11	22	1.56
43793698--43793739	21	2.0	21	100	0	84	57	4	14	23	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43796391--43796478	27	3.3	27	78	9	90	42	17	11	29	1.84
43798249--43798296	23	2.1	23	100	0	96	31	12	8	47	1.71
43798489--43798591	46	2.2	46	81	3	118	28	13	25	33	1.94
43803837--43803927	45	2.0	45	87	4	130	30	21	20	26	1.98
43806371--43806693	48	6.7	48	85	1	380	28	30	17	23	1.97
43810465--43810530	26	2.6	26	82	2	80	16	22	24	36	1.94
43810449--43810654	25	8.3	25	68	13	88	19	22	22	35	1.96
43810487--43810654	73	2.3	73	79	10	173	20	23	21	34	1.97
43810644--43810709	25	2.7	24	77	15	64	27	28	12	31	1.92
43813536--43813728	47	4.1	47	88	2	264	32	10	30	26	1.90
43813565--43813636	22	3.1	22	64	24	58	33	13	29	23	1.93
43813610--43813685	23	3.2	25	62	24	63	28	13	34	23	1.92
43813686--43813783	50	2.0	50	89	4	153	36	7	24	31	1.83
43813935--43814077	37	3.9	37	93	0	232	23	18	32	25	1.97
43831794--43831819	6	4.3	6	100	0	52	15	0	46	38	1.46
43834696--43834847	40	3.8	40	78	8	132	23	23	27	25	2.00
43841985--43842137	40	3.8	40	78	9	143	22	23	28	25	2.00
43848993--43849025	10	3.2	10	95	4	57	24	18	27	30	1.98
43850562--43850595	17	2.0	17	100	0	68	35	11	0	52	1.38
43852624--43852656	9	3.7	9	84	15	50	63	15	0	21	1.30
43862138--43862220	31	2.7	31	96	3	152	27	26	16	28	1.97
43862433--43862484	25	2.1	25	89	3	79	28	17	21	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43862440--43862509	25	2.8	25	86	4	88	28	21	22	27	1.99
43863437--43863544	27	3.9	26	76	15	92	30	8	18	42	1.80
43863486--43863623	27	5.1	27	80	7	138	28	7	21	41	1.81
43863499--43863623	54	2.3	54	86	2	162	28	8	22	41	1.82
43863521--43863663	27	5.3	26	73	11	110	29	11	22	37	1.89
43863655--43863746	27	3.4	27	89	0	130	40	8	23	27	1.84
43869347--43869510	73	2.2	74	87	1	249	29	22	23	24	1.99
43876025--43876242	46	4.7	46	84	3	260	27	21	29	21	1.98
43876025--43876241	94	2.3	92	85	4	276	28	21	29	21	1.99
43878225--43878294	27	2.6	27	93	2	113	30	28	14	27	1.95
43882322--43882348	10	2.7	10	100	0	54	33	48	0	18	1.49
43882424--43882478	26	2.2	24	80	6	65	41	23	20	14	1.89
43882483--43882645	32	5.2	32	88	0	222	36	22	19	20	1.95
43883072--43883160	27	3.3	27	85	3	108	28	14	16	40	1.88
43883086--43883196	27	4.2	26	81	5	114	27	12	22	37	1.90
43885337--43885401	7	9.1	7	72	3	58	43	33	1	21	1.62
43885362--43885430	22	3.2	22	83	2	77	46	24	0	28	1.53
43885338--43885422	29	3.0	28	87	3	116	44	29	1	24	1.61
43885340--43885422	14	5.8	14	75	14	62	45	27	1	25	1.61
43885750--43886136	116	3.4	116	80	5	399	31	17	18	33	1.94
43885923--43886186	115	2.3	115	81	5	302	28	17	16	37	1.91
43886340--43886475	70	1.9	71	86	8	197	19	33	5	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43886545--43886589	19	2.4	19	88	0	63	6	44	8	40	1.62
43887593--43887675	42	2.0	42	97	0	157	32	14	8	44	1.75
43889454--43889626	9	19.9	9	71	15	64	48	16	0	35	1.46
43889414--43889605	43	4.5	43	83	7	246	50	15	0	33	1.48
43889454--43889664	34	5.8	34	71	17	129	48	17	0	34	1.47
43889395--43889519	52	2.4	52	90	0	196	50	16	1	32	1.54
43889541--43889673	54	2.5	53	89	4	196	45	19	0	34	1.51
43889640--43889664	9	2.8	9	100	0	50	52	24	0	24	1.48
43895891--43896203	49	6.4	49	96	0	554	28	8	33	29	1.87
43896304--43896388	37	2.3	37	95	0	152	24	20	34	21	1.97
43898738--43898931	96	2.0	96	86	0	271	12	32	18	36	1.89
43902104--43902138	14	2.6	14	90	4	54	37	2	14	45	1.59
43907122--43907152	15	2.1	15	93	0	53	29	29	0	41	1.56
43908767--43908959	57	3.4	57	84	2	255	26	17	20	35	1.95
43910045--43910079	13	2.6	14	86	9	54	28	34	22	14	1.93
43914269--43914300	8	4.0	8	91	0	55	46	25	25	3	1.67
43914547--43914611	28	2.3	28	91	0	103	35	27	6	30	1.81
43914717--43914806	28	3.2	27	79	7	101	21	23	22	33	1.97
43914717--43914806	27	3.2	28	79	7	94	21	23	22	33	1.97
43918295--43918367	33	2.2	33	87	4	103	50	10	16	21	1.75
43921178--43921519	47	7.3	47	94	0	567	27	30	8	33	1.86
43921441--43921516	22	3.3	22	66	16	64	26	30	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43925568--43925748	40	4.6	40	87	2	249	22	20	30	26	1.98
43933882--43933980	28	3.5	28	84	4	119	31	27	14	27	1.95
43934434--43934461	2	14.0	2	100	0	56	50	0	0	50	1.00
43938326--43938542	46	4.8	45	76	13	169	25	30	18	25	1.98
43939689--43939721	13	2.5	13	90	0	57	36	39	18	6	1.75
43941910--43942090	40	4.6	40	88	2	258	24	22	25	26	2.00
43943095--43943193	37	2.7	37	96	0	180	24	32	19	24	1.97
43943338--43943489	48	3.2	48	90	0	232	32	25	6	36	1.82
43943468--43943513	24	1.9	24	95	0	83	41	23	0	34	1.55
43943420--43943561	72	2.0	72	95	0	257	34	22	4	38	1.76
43943492--43943605	48	2.4	48	92	0	201	32	23	5	38	1.77
43943372--43943605	120	2.0	120	91	0	378	33	23	5	37	1.78
43946135--43946176	22	1.9	22	85	9	59	33	9	14	42	1.78
43962371--43962419	2	24.5	2	100	0	98	51	0	0	48	1.00
43965400--43965430	12	2.6	12	94	0	53	25	45	22	6	1.76
43970571--43970609	14	2.5	17	80	19	50	46	0	25	28	1.53
43974171--43974219	19	2.6	19	90	0	80	28	6	28	36	1.81
43974303--43974345	18	2.4	18	100	0	86	34	18	23	23	1.96
43974696--43974728	14	2.3	15	89	5	50	33	9	21	36	1.85
43979733--43979919	71	2.7	68	93	5	281	18	28	18	34	1.95
43979756--43979919	71	2.3	71	100	0	328	18	28	17	35	1.94
43979756--43979953	71	2.8	70	92	3	276	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43998349--43998441	48	1.9	48	86	6	134	56	2	6	34	1.37
43998344--43998442	24	4.0	24	75	12	94	55	2	7	35	1.39
44000204--44000619	86	4.7	87	77	7	378	20	23	21	34	1.97
44000415--44000705	44	6.7	44	72	11	190	19	25	21	34	1.97
44000545--44000659	43	2.6	43	90	5	169	20	20	24	34	1.96
44000545--44000659	45	2.6	44	90	5	171	20	20	24	34	1.96
44004010--44004079	27	2.5	28	88	2	106	31	25	14	28	1.95
44007012--44007136	40	3.2	38	82	7	144	29	24	24	21	1.99
44007012--44007198	79	2.3	80	78	10	186	26	22	26	23	2.00
44015046--44015171	40	3.2	38	79	6	128	28	23	25	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345