genome.fa.s12.2.7.7.80.10.50.1000.237.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  237  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69787192--69787330	48	2.9	47	81	5	154	30	16	22	30	1.96
69787294--69787370	38	2.0	38	94	0	136	28	15	27	28	1.96
69802015--69802067	26	2.0	26	92	0	88	26	15	0	58	1.37
69807552--69807736	40	4.7	40	89	5	252	27	27	21	24	1.99
69807552--69807736	79	2.3	82	85	7	256	27	27	21	24	1.99
69815775--69815960	40	4.7	40	89	5	261	26	27	21	24	1.99
69820349--69820413	15	4.4	15	74	16	64	61	13	13	10	1.57
69820349--69820417	30	2.3	31	78	14	83	59	17	13	10	1.60
69825835--69825875	20	2.0	20	100	0	82	21	24	19	34	1.97
69835675--69835755	24	3.4	24	78	13	78	34	14	19	30	1.92
69835746--69835806	23	2.7	22	70	12	52	34	19	18	27	1.95
69839261--69839522	39	6.7	39	90	1	382	30	28	21	19	1.98
69839596--69839675	28	2.9	28	84	0	97	30	22	10	37	1.87
69846265--69846422	40	4.0	40	79	4	151	26	24	26	22	2.00
69846265--69846452	80	2.3	80	79	12	206	26	23	27	22	2.00
69857264--69857448	79	2.3	82	82	9	222	24	24	27	23	2.00
69857265--69857456	40	4.8	40	77	8	169	25	24	28	22	2.00
69857264--69857481	79	2.7	79	78	7	176	25	23	27	23	2.00
69877664--69877724	30	2.0	30	87	0	86	31	22	6	39	1.80
69883141--69883362	40	5.6	41	86	5	255	25	26	20	28	1.99
69883169--69883359	79	2.4	81	87	7	266	25	24	20	29	1.99
69894065--69894115	24	2.1	24	100	0	102	39	3	15	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69902998--69903026	15	1.9	15	100	0	58	41	0	0	58	0.98
69905061--69905121	26	2.3	27	80	11	72	34	27	9	27	1.89
69906504--69906700	55	3.6	54	80	8	206	37	17	23	21	1.94
69906504--69906711	54	3.9	54	80	8	199	37	17	23	22	1.94
69912338--69912366	13	2.2	13	100	0	58	31	37	31	0	1.58
69913561--69913875	48	6.6	48	77	8	277	29	26	17	25	1.98
69925726--69925828	29	3.6	29	92	2	154	26	32	15	26	1.96
69927504--69927815	48	6.6	48	76	8	253	29	24	19	26	1.98
69930844--69930980	56	2.4	56	92	0	238	32	23	16	27	1.96
69931590--69931620	15	2.1	15	93	0	53	54	25	0	19	1.44
69932135--69932163	14	2.0	15	93	6	51	51	20	0	27	1.47
69934051--69934084	16	2.1	16	88	0	50	35	11	2	50	1.54
69938375--69938437	31	2.0	31	84	6	83	44	7	11	36	1.69
69940469--69940523	27	2.0	27	100	0	110	50	10	23	14	1.74
69945044--69945214	47	3.7	44	76	14	150	26	18	30	23	1.98
69945934--69945962	13	2.2	13	100	0	58	10	13	48	27	1.75
69948149--69948195	20	2.3	20	92	0	85	36	19	21	23	1.95
69952817--69952866	20	2.4	21	83	3	66	40	20	20	20	1.92
69954411--69954453	21	2.1	20	83	12	52	27	4	13	53	1.60
69956078--69956115	3	12.7	3	100	0	76	0	34	65	0	0.93
69962813--69962866	3	17.0	3	85	11	56	62	5	0	31	1.18
69962938--69963019	3	27.3	3	71	22	50	65	1	3	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69962934--69963002	18	3.7	18	81	14	86	62	1	2	33	1.19
69963520--69963605	30	2.9	30	98	0	163	24	6	52	16	1.68
69963552--69963604	18	3.3	18	65	29	55	24	7	52	15	1.68
69964205--69964444	87	2.9	79	78	10	232	19	22	20	37	1.95
69964271--69964408	43	3.2	43	71	6	134	20	19	23	36	1.95
69964132--69964839	172	4.1	173	85	5	786	19	23	21	35	1.96
69964122--69964839	258	2.8	258	85	5	897	19	22	21	35	1.96
69964768--69964880	43	2.6	43	92	0	181	22	20	22	35	1.96
69964132--69964839	86	8.3	84	83	8	711	19	23	21	35	1.96
69965747--69965860	52	2.2	53	87	1	158	54	9	14	21	1.68
69965982--69966367	198	1.9	198	95	0	691	17	25	16	39	1.91
69969561--69969605	9	4.8	10	78	13	51	51	11	15	22	1.75
69969561--69969605	19	2.4	18	85	3	54	51	11	15	22	1.75
69971777--69971848	3	23.0	3	91	8	101	62	1	0	36	1.04
69971923--69972002	3	26.3	3	72	20	53	65	1	3	30	1.18
69971921--69972003	12	6.6	12	76	16	71	65	1	3	30	1.17
69971923--69971984	18	3.3	18	81	14	72	62	1	3	32	1.20
69971921--69972010	27	3.4	27	72	15	73	66	1	3	28	1.14
69973758--69973929	93	1.8	93	96	0	317	27	29	21	20	1.98
69973751--69973926	46	3.8	46	79	12	216	28	29	21	20	1.98
69976601--69976639	15	2.6	16	84	8	55	46	0	12	41	1.42
69977336--69977389	21	2.6	20	82	8	63	66	0	1	31	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69983051--69983160	43	2.6	42	79	4	114	23	15	29	31	1.95
69990659--69990753	42	2.2	43	84	1	129	26	15	24	33	1.95
69992440--69992584	40	3.6	40	85	4	193	25	24	26	23	2.00
70000010--70000174	43	3.9	43	76	11	169	31	23	18	27	1.97
70002960--70003049	27	3.3	27	73	4	92	31	20	26	22	1.98
70003049--70003209	69	2.3	69	82	3	207	37	16	25	19	1.93
70007108--70007187	41	2.0	41	84	0	106	30	10	22	37	1.87
70008675--70008699	8	3.1	8	100	0	50	24	0	0	76	0.80
70011195--70011221	10	2.7	10	100	0	54	29	18	11	40	1.85
70011512--70011627	44	2.7	42	76	19	125	33	26	12	26	1.93
70020361--70020401	21	1.9	22	85	5	57	53	17	7	21	1.67
70021136--70021284	43	3.5	42	79	9	160	30	26	18	24	1.98
70033783--70033854	6	11.7	6	75	16	58	75	2	16	5	1.12
70033782--70033860	36	2.2	36	84	8	99	74	2	16	6	1.13
70033791--70033860	30	2.3	29	83	9	79	77	1	15	5	1.03
70036926--70036962	19	2.0	19	94	5	67	21	5	13	59	1.54
70039772--70040154	47	8.1	47	92	2	613	31	12	30	26	1.92
70039893--70039968	24	3.2	24	62	23	61	28	13	32	25	1.93
70040128--70040264	46	3.0	46	89	0	202	34	8	31	25	1.86
70040412--70040520	37	2.9	37	90	0	164	23	18	29	28	1.98
70043581--70043769	40	4.7	40	93	0	315	23	20	25	30	1.99
70053231--70053394	40	4.1	40	81	4	170	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70053231--70053394	80	2.0	80	82	2	195	25	28	21	25	1.99
70061680--70061743	31	2.1	31	90	0	101	25	23	15	35	1.94
70061948--70062098	24	6.4	24	90	4	227	26	21	21	29	1.99
70061948--70062098	47	3.2	48	89	4	227	26	21	21	29	1.99
70062157--70062233	9	7.9	9	72	16	64	35	20	9	35	1.85
70062153--70062235	20	4.2	20	96	0	157	32	19	12	36	1.88
70062153--70062224	11	7.1	11	70	17	66	31	19	12	36	1.89
70062272--70062319	25	1.9	25	82	0	60	25	14	25	35	1.94
70063559--70063895	27	12.6	27	86	5	436	40	9	22	27	1.84
70063560--70063895	80	4.2	80	88	4	475	40	9	22	27	1.84
70063560--70063895	107	3.1	107	86	5	466	40	9	22	27	1.84
70066719--70066782	31	2.1	31	90	0	101	25	23	15	35	1.94
70066975--70067140	24	7.0	24	88	4	239	26	21	22	28	1.99
70066974--70067140	47	3.5	48	89	4	241	26	21	22	29	1.99
70066975--70067140	71	2.3	71	91	3	262	26	21	22	28	1.99
70067198--70067274	9	7.9	9	72	16	64	35	20	9	35	1.85
70067194--70067276	20	4.2	20	96	0	157	32	19	12	36	1.88
70067194--70067265	11	7.1	11	70	17	66	31	19	12	36	1.89
70068596--70068932	27	12.6	27	86	5	418	40	9	22	27	1.85
70068597--70068932	53	6.3	54	84	5	425	40	9	22	27	1.85
70068597--70068932	80	4.2	81	87	5	461	40	9	22	27	1.85
70070352--70070515	40	4.1	40	78	4	152	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70070352--70070515	80	2.0	80	81	2	186	26	28	20	24	1.99
70083574--70083605	14	2.3	15	89	10	50	37	9	12	40	1.75
70084103--70084146	22	2.0	22	95	0	79	36	15	9	38	1.80
70084548--70084713	83	2.0	83	97	1	316	21	10	18	50	1.76
70087048--70087162	52	2.2	53	87	4	171	23	26	13	35	1.93
70087048--70087163	24	4.4	27	73	15	118	24	26	13	35	1.93
70092847--70092932	36	2.4	37	80	7	106	10	22	2	65	1.35
70092853--70092929	18	4.2	18	78	8	84	10	20	2	66	1.34
70092907--70092956	20	2.4	21	83	9	59	4	18	4	74	1.14
70092922--70092994	21	3.8	20	72	12	55	5	23	1	69	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345