genome.fa.s12.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  116  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30955930--30956277	44	7.8	44	67	11	140	27	22	19	30	1.98
30955892--30956236	182	1.9	182	81	7	423	27	22	19	29	1.98
30956494--30956638	44	3.3	44	92	0	227	22	25	27	24	2.00
30956472--30956682	88	2.4	86	76	8	208	21	27	25	26	1.99
30956625--30956860	44	5.4	44	75	8	187	27	23	20	28	1.99
30963560--30963935	3	127.0	3	75	9	254	60	1	6	31	1.32
30965070--30965104	2	17.5	2	100	0	70	48	0	0	51	1.00
30966633--30966697	32	2.0	33	87	3	96	36	9	13	40	1.77
30971312--30971340	2	14.5	2	100	0	58	48	0	0	51	1.00
30971637--30971675	19	2.1	19	100	0	78	51	12	0	35	1.40
30981098--30981135	19	2.0	19	94	0	67	34	10	23	31	1.89
30981404--30981439	2	18.0	2	100	0	72	50	0	0	50	1.00
30984001--30984094	32	3.0	30	77	13	77	44	3	12	39	1.59
30984020--30984105	32	2.7	31	80	10	86	45	5	10	38	1.63
30984896--30985082	94	2.0	94	86	6	263	29	15	16	37	1.90
30985329--30985508	92	2.0	92	88	2	272	29	17	15	37	1.90
30985520--30985556	2	18.5	2	100	0	74	48	0	0	51	1.00
30987965--30988001	2	18.5	2	100	0	74	0	48	0	51	1.00
30991928--30991986	31	1.9	31	85	0	82	28	18	25	27	1.98
30991941--30992030	46	2.0	46	88	0	135	26	21	23	28	1.99
30992685--30992743	28	2.1	28	96	0	109	28	8	15	47	1.74
30995655--30995704	23	2.2	22	92	3	82	52	6	4	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000172--31000260	42	2.1	42	89	0	133	21	6	38	33	1.80
31000872--31000931	31	2.0	30	86	3	84	35	10	6	48	1.63
31009136--31009165	15	1.9	16	93	6	53	30	0	0	70	0.88
31009360--31009398	19	2.0	20	90	5	62	25	0	5	69	1.09
31009356--31009414	20	2.7	23	77	20	72	25	0	6	67	1.15
31009379--31009424	25	1.9	23	86	8	65	30	0	6	63	1.20
31019137--31019163	13	2.1	13	100	0	54	22	0	0	77	0.76
31023438--31023474	16	2.3	16	86	13	58	40	0	0	59	0.97
31024606--31024641	18	1.9	18	88	5	54	63	5	8	22	1.43
31025204--31025246	21	2.0	21	90	0	68	30	9	27	32	1.88
31028515--31028568	28	1.9	28	100	0	108	29	7	3	59	1.42
31030697--31030744	15	3.0	16	80	17	55	37	0	2	60	1.09
31030949--31031001	24	2.2	25	83	10	65	49	1	0	49	1.12
31037984--31038218	43	5.5	43	86	2	337	27	29	20	22	1.98
31037984--31038218	86	2.7	86	94	0	407	27	29	20	22	1.98
31038351--31038423	31	2.4	31	84	13	89	68	4	2	24	1.20
31042964--31043004	18	2.3	19	83	12	59	51	2	0	46	1.14
31043392--31043430	14	2.8	14	84	0	51	56	28	0	15	1.40
31043553--31043604	7	7.4	7	80	8	52	51	28	0	19	1.47
31044126--31044315	41	4.6	41	91	2	301	26	27	21	24	1.99
31044302--31044416	41	2.8	41	93	0	194	21	24	23	30	1.99
31045528--31045553	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31045708--31045750	19	2.2	21	84	12	56	34	11	11	41	1.78
31046742--31046787	23	2.0	24	91	4	76	23	17	32	26	1.97
31047000--31047036	2	18.5	2	91	0	56	43	0	2	54	1.14
31047882--31047906	6	4.2	6	100	0	50	52	0	0	48	1.00
31050366--31050440	32	2.4	30	77	12	80	46	2	4	46	1.35
31059865--31060028	71	2.3	71	100	0	328	18	28	17	35	1.94
31059865--31060062	71	2.8	70	91	3	258	20	28	17	33	1.95
31067429--31067592	71	2.3	71	100	0	328	18	28	17	35	1.94
31067429--31067626	71	2.8	70	91	3	258	20	28	17	33	1.95
31072395--31072438	23	1.9	24	86	9	65	0	18	4	77	0.94
31075074--31075141	22	3.0	22	81	10	84	41	19	23	16	1.90
31076294--31076318	5	5.0	5	100	0	50	20	20	0	60	1.37
31076323--31076385	7	9.4	7	77	16	62	47	1	0	50	1.10
31076332--31076374	20	2.2	20	91	0	68	51	0	0	48	1.00
31076671--31076726	18	3.4	18	68	27	61	25	48	7	19	1.74
31076661--31076759	30	3.3	30	91	0	162	28	49	5	17	1.67
31077341--31077432	24	3.9	23	77	13	80	33	5	5	55	1.46
31077372--31077435	24	2.8	23	83	6	85	32	4	6	56	1.45
31077415--31077473	23	2.8	20	72	16	57	32	6	5	55	1.48
31078935--31078981	23	2.0	23	91	0	76	17	12	14	55	1.70
31084163--31084390	73	3.1	74	85	6	311	28	17	21	33	1.95
31084721--31084769	14	3.5	14	97	0	89	18	20	4	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31084749--31085090	75	4.3	75	76	16	305	30	17	18	33	1.94
31084487--31085212	349	2.1	336	93	4	1224	30	17	19	33	1.94
31084837--31085300	88	5.5	85	75	14	383	30	17	19	32	1.95
31085070--31085104	14	2.5	14	95	0	61	20	20	2	57	1.54
31084248--31085217	527	1.9	518	82	8	1202	28	17	19	33	1.95
31084155--31085408	602	2.1	588	84	7	1567	28	17	19	34	1.94
31085179--31085353	88	2.0	88	89	0	269	24	18	20	36	1.95
31085331--31085370	14	2.9	14	88	3	55	12	7	12	67	1.41
31085409--31085447	19	2.1	19	100	0	78	15	25	30	28	1.96
31086156--31086211	18	3.4	18	68	27	61	25	48	7	19	1.74
31086146--31086244	30	3.3	30	92	0	171	27	49	6	17	1.70
31086697--31086748	24	2.2	23	83	10	61	36	3	0	59	1.16
31086774--31086852	2	40.5	2	75	14	67	40	3	1	54	1.26
31086778--31086854	25	3.0	26	79	9	88	38	3	1	55	1.26
31086774--31086902	25	5.0	25	75	15	86	35	3	3	56	1.36
31086774--31086891	62	1.9	59	84	11	155	37	4	2	55	1.33
31086836--31086902	22	2.8	24	82	8	75	32	2	5	58	1.38
31094362--31094402	20	2.1	20	86	13	59	43	0	9	46	1.36
31094797--31094855	29	2.0	29	83	6	75	38	13	15	32	1.86
31101954--31102017	22	3.1	20	76	19	69	57	0	0	42	0.98
31101972--31102008	18	2.0	19	94	5	67	59	0	0	40	0.97
31102121--31102179	19	3.0	20	80	14	68	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31102127--31102211	19	4.6	19	73	19	90	56	1	0	42	1.07
31102140--31102164	13	1.9	13	100	0	50	60	0	0	40	0.97
31102175--31102220	21	2.1	23	88	8	69	56	2	0	41	1.11
31102264--31102319	29	2.0	28	82	3	67	73	5	5	16	1.21
31109922--31109965	23	1.9	23	85	0	61	61	6	0	31	1.22
31112032--31112089	28	2.1	27	87	12	84	62	3	0	34	1.12
31112323--31112355	3	11.0	3	100	0	66	66	0	0	33	0.92
31112750--31112788	2	19.5	2	89	0	60	48	2	2	46	1.29
31116405--31116445	18	2.3	19	87	8	59	24	14	0	60	1.34
31117050--31117091	19	2.3	19	87	4	59	45	0	11	42	1.41
31117050--31117084	18	2.1	17	89	10	54	42	0	14	42	1.45
31118837--31118893	25	2.3	25	93	0	96	22	15	17	43	1.87
31119501--31119540	21	2.0	21	95	5	73	50	7	0	42	1.30
31119500--31119546	21	2.2	21	85	7	69	53	8	0	38	1.32
31127392--31127588	103	1.9	103	85	0	268	38	18	8	34	1.81
31128238--31128377	76	1.9	75	89	4	219	46	12	10	31	1.74
31128642--31128694	21	2.5	20	80	17	63	47	9	15	28	1.76
31129004--31129052	22	2.2	22	82	7	55	57	4	0	38	1.18
31130172--31130235	29	2.2	29	85	0	83	40	3	25	31	1.71
31130265--31130297	14	2.4	14	90	10	50	39	0	0	60	0.97
31134870--31134913	3	14.7	3	100	0	88	0	0	31	68	0.90
31135202--31135232	12	2.6	12	100	0	62	12	25	35	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31147332--31147370	20	2.0	20	89	0	60	30	2	0	66	1.05
31147643--31147675	2	16.5	2	100	0	66	48	0	0	51	1.00
31147663--31148495	208	4.0	208	92	3	1396	38	11	6	42	1.67
31147172--31148502	426	3.1	426	94	3	2339	39	11	6	42	1.68
31149352--31149390	18	2.1	19	85	4	53	58	0	0	41	0.98
31149871--31149948	17	4.9	16	78	12	90	11	7	1	79	0.99
31149859--31149946	33	2.8	32	89	8	135	9	7	2	80	0.98
31149864--31149945	28	3.0	27	77	15	87	9	8	1	80	0.96
31150071--31150109	15	2.7	14	80	7	51	38	2	0	58	1.12
31150156--31150193	13	2.9	13	96	0	67	36	5	0	57	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345