genome.fa.s12.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  157  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43438009--43438050	17	2.4	18	80	4	50	76	0	21	2	0.90
43438009--43438050	9	4.8	9	82	5	50	76	0	21	2	0.90
43442077--43442136	27	2.2	27	84	0	75	26	16	36	20	1.93
43446989--43447117	27	4.8	27	84	3	152	30	21	6	41	1.80
43446962--43447090	54	2.4	54	82	2	143	31	23	7	37	1.83
43447013--43447147	54	2.5	54	81	0	162	32	20	6	40	1.79
43447104--43447345	54	4.5	54	77	6	195	41	18	7	31	1.79
43446959--43447156	81	2.4	81	76	0	207	34	22	6	35	1.80
43447104--43447292	81	2.3	80	74	11	206	41	19	7	31	1.80
43447106--43447344	27	8.8	27	79	10	150	41	18	7	32	1.79
43448659--43448725	20	3.3	20	91	0	107	32	11	22	32	1.90
43448776--43448917	23	6.1	23	95	1	257	26	21	22	30	1.99
43449132--43449195	31	2.1	31	85	5	85	39	15	23	21	1.92
43453640--43453700	31	2.0	31	93	0	104	36	4	22	36	1.76
43458791--43458891	28	3.5	28	86	6	114	29	13	26	29	1.94
43466742--43466842	28	3.5	28	86	6	114	29	13	26	29	1.94
43468352--43468494	40	3.6	40	75	4	121	19	25	25	29	1.99
43468422--43468533	40	2.8	40	81	0	116	24	25	21	29	1.99
43476362--43476529	40	4.2	40	77	3	151	22	26	23	27	2.00
43482291--43482473	39	4.7	39	82	2	224	24	24	19	32	1.97
43482294--43482475	78	2.3	78	85	1	249	25	23	18	32	1.97
43491663--43491833	39	4.4	39	90	0	270	23	26	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43507267--43507367	28	3.5	30	82	6	118	29	14	26	28	1.95
43507296--43507371	29	2.7	28	76	13	75	30	14	26	28	1.95
43514416--43514514	28	3.5	28	84	4	101	29	15	27	28	1.96
43514445--43514514	27	2.5	28	88	2	97	30	15	27	27	1.96
43518556--43518802	44	5.7	44	77	6	227	25	18	24	31	1.97
43518681--43518794	43	2.7	43	82	8	126	24	18	23	33	1.97
43520164--43520193	11	2.7	11	100	0	60	26	0	20	53	1.46
43524244--43524278	18	1.9	18	88	11	54	57	31	2	8	1.44
43524790--43524921	55	2.4	55	74	0	129	31	31	23	12	1.92
43535957--43536113	43	3.7	42	76	12	151	24	19	24	31	1.98
43539885--43539972	45	2.0	45	93	0	149	38	25	12	23	1.90
43539901--43539976	21	3.5	21	70	16	64	38	25	13	23	1.91
43548960--43549019	29	2.1	29	96	0	111	16	25	15	43	1.86
43553901--43554068	40	4.2	40	80	2	178	25	26	21	26	1.99
43553892--43554068	80	2.2	80	80	3	196	25	26	21	26	1.99
43557362--43557393	15	2.0	17	88	11	50	25	0	31	43	1.55
43557958--43557997	20	2.0	21	90	5	64	35	7	12	45	1.70
43559463--43559630	40	4.2	40	79	3	160	23	26	23	27	2.00
43559479--43559628	80	1.9	80	83	8	198	22	26	24	27	1.99
43567440--43567607	40	4.2	40	79	3	160	22	26	23	27	1.99
43567456--43567605	80	1.9	80	83	8	198	21	27	24	27	1.99
43575390--43575538	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43575431--43575538	40	2.7	38	85	8	128	21	29	25	23	1.99
43583486--43583634	80	1.9	80	81	2	183	22	30	24	22	1.99
43583527--43583634	40	2.7	38	85	8	128	21	29	25	23	1.99
43593784--43593915	50	2.6	51	83	8	178	37	12	15	35	1.84
43602633--43602695	31	2.0	31	87	0	90	23	23	15	36	1.94
43602880--43603008	25	5.2	25	82	8	131	26	21	18	33	1.97
43603059--43603125	20	3.3	20	93	0	116	32	20	11	34	1.90
43603059--43603114	11	5.5	11	71	16	57	32	19	12	35	1.89
43603154--43603208	25	2.2	25	80	9	58	27	16	21	34	1.95
43603162--43603209	25	1.9	25	87	8	71	22	16	25	35	1.95
43604748--43604921	45	3.8	44	80	9	206	21	20	29	28	1.98
43607829--43607883	15	3.7	15	83	11	78	12	16	9	61	1.55
43614665--43614899	48	4.9	48	79	4	215	24	28	18	28	1.98
43614665--43614899	96	2.4	96	81	5	269	24	28	18	28	1.98
43619247--43619386	27	5.2	27	88	4	194	15	25	21	37	1.93
43627178--43627315	27	5.1	27	89	4	199	16	25	22	35	1.95
43629047--43629147	28	3.5	30	82	6	118	29	14	26	28	1.95
43629076--43629151	29	2.7	28	76	13	75	30	14	26	28	1.95
43636930--43637030	28	3.5	30	82	6	118	29	14	26	28	1.95
43636959--43637034	29	2.7	28	76	13	75	30	14	26	28	1.95
43643391--43643566	46	3.8	46	81	10	223	21	21	28	28	1.98
43643387--43643558	93	1.8	93	94	0	308	21	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43648108--43648186	29	2.7	29	86	5	106	27	32	15	24	1.95
43649636--43649704	15	4.6	15	79	0	75	11	15	13	59	1.61
43649627--43649714	30	3.0	30	84	1	106	10	15	15	57	1.64
43649636--43649715	15	5.4	14	72	10	61	10	16	13	60	1.59
43652099--43652272	45	3.8	47	78	12	191	21	21	28	28	1.99
43654527--43654808	48	5.9	47	76	9	257	26	29	17	26	1.97
43654530--43654800	96	2.8	94	83	7	307	26	29	16	27	1.97
43654531--43654812	144	2.0	144	85	4	381	26	29	16	26	1.97
43658457--43658518	24	2.6	24	100	0	124	35	25	17	20	1.95
43666335--43666397	24	2.6	24	100	0	126	34	26	17	20	1.95
43668090--43668654	281	2.0	283	98	0	1107	23	14	12	49	1.77
43668821--43669195	130	2.9	130	84	2	340	25	18	18	37	1.94
43668972--43669247	130	2.1	132	92	1	457	26	19	19	35	1.95
43670463--43670510	25	1.9	25	91	0	78	16	18	10	54	1.70
43674500--43674554	25	2.3	23	78	12	58	43	3	16	36	1.65
43674616--43674683	25	2.9	24	82	6	77	58	5	5	29	1.45
43674701--43674831	23	5.6	25	71	12	82	54	2	5	37	1.36
43674697--43674756	25	2.4	25	83	5	77	56	1	5	36	1.31
43674865--43674933	29	2.4	29	92	4	113	15	49	26	8	1.74
43680206--43680247	13	3.3	13	80	6	50	33	2	0	64	1.07
43680199--43680250	25	2.1	25	85	0	68	38	1	0	59	1.08
43681777--43681857	40	2.0	40	97	0	153	48	8	4	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43688680--43688781	29	3.5	29	95	0	186	23	22	14	39	1.91
43696477--43696578	29	3.5	29	95	0	186	23	22	14	39	1.91
43704263--43704364	29	3.5	29	95	0	186	23	22	14	39	1.91
43706891--43707111	93	2.4	91	88	2	307	20	25	14	38	1.91
43706891--43707114	46	4.8	46	88	3	299	20	25	14	39	1.91
43709187--43709238	11	4.7	11	76	9	52	63	3	0	32	1.12
43710696--43710759	22	2.7	24	78	14	69	37	17	26	18	1.93
43712026--43712246	93	2.4	91	86	2	289	20	25	14	39	1.90
43712026--43712249	46	4.8	46	86	3	281	20	25	14	40	1.90
43714348--43714432	11	7.7	11	75	10	75	62	4	0	32	1.16
43714348--43714434	33	2.6	33	98	0	165	60	4	0	34	1.17
43715524--43715596	31	2.4	31	95	0	128	28	26	15	30	1.96
43715620--43715711	42	2.2	42	100	0	184	33	20	14	31	1.92
43716810--43716993	27	6.7	27	74	11	117	31	10	18	39	1.84
43717014--43717116	27	3.8	26	80	11	93	40	7	21	30	1.81
43717025--43717116	27	3.4	27	85	8	116	41	6	22	29	1.79
43717025--43717130	54	2.0	54	81	7	126	38	6	21	33	1.80
43717339--43717400	28	2.2	28	100	0	124	17	43	17	20	1.88
43719689--43719756	25	2.7	25	86	4	84	27	20	26	25	1.99
43721691--43721728	20	2.0	19	85	10	51	52	18	26	2	1.58
43727058--43727134	27	2.9	27	84	0	100	40	16	12	29	1.86
43734899--43734972	27	2.8	27	91	2	114	35	18	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43740899--43740929	16	1.9	16	93	0	53	48	3	0	48	1.17
43741800--43741843	19	2.4	19	85	7	56	50	0	9	40	1.34
43743638--43743706	28	2.5	28	92	2	113	42	27	10	20	1.84
43745324--43745553	53	4.3	54	74	3	185	20	24	16	38	1.92
43749470--43749611	27	5.3	27	81	3	99	38	21	9	29	1.86
43749593--43749719	27	4.7	27	88	0	166	32	24	6	37	1.81
43749563--43749719	54	2.9	55	84	1	176	33	24	7	35	1.83
43749524--43749838	27	11.7	27	79	8	133	36	22	7	32	1.83
43749617--43749749	54	2.5	54	86	2	169	34	24	6	34	1.80
43749550--43749761	81	2.6	81	72	7	196	35	22	7	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345