genome.fa.s12.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  149  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40825644--40825816	46	3.7	46	78	13	210	21	21	27	28	1.99
40825641--40825811	93	1.8	93	96	0	315	21	21	28	28	1.99
40829584--40829808	49	4.5	49	88	2	306	28	27	18	24	1.98
40829571--40829815	99	2.5	100	85	2	323	28	27	19	24	1.98
40831943--40832007	15	4.4	15	79	9	62	60	13	16	9	1.59
40831943--40832007	30	2.2	29	81	8	78	60	13	16	9	1.59
40840917--40840956	21	1.9	21	85	10	55	60	5	15	20	1.53
40842847--40843068	40	5.6	40	90	1	322	23	20	26	29	1.99
40846215--40846431	48	4.5	48	72	6	134	26	24	20	28	1.99
40846151--40846431	144	2.0	139	84	4	366	26	25	20	28	1.99
40847554--40847632	30	2.6	30	97	0	149	25	11	25	37	1.89
40850923--40851107	40	4.7	39	81	9	196	27	28	20	24	1.99
40850923--40851106	79	2.3	81	81	7	198	26	28	20	24	1.99
40859089--40859272	40	4.7	39	85	8	239	26	27	22	24	2.00
40859089--40859272	78	2.3	81	86	6	252	26	27	22	24	2.00
40869611--40869786	27	6.5	27	88	0	253	27	23	7	41	1.82
40869789--40869949	27	6.0	27	84	0	205	34	20	20	24	1.97
40869789--40869941	81	1.9	81	87	2	227	33	20	21	24	1.97
40870196--40870247	27	2.0	26	88	3	77	15	26	23	34	1.94
40870223--40870275	21	2.7	19	76	5	52	13	24	28	33	1.93
40870278--40870307	2	15.0	2	100	0	60	50	0	0	50	1.00
40870488--40870569	6	13.3	6	69	19	53	18	18	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40870488--40870548	25	2.4	25	88	0	95	18	19	14	47	1.82
40870582--40870647	34	2.0	33	83	16	84	24	19	25	30	1.98
40875693--40875731	21	1.9	19	85	10	51	35	5	2	56	1.35
40876367--40876648	48	5.9	49	75	8	231	27	25	18	29	1.98
40876348--40876630	143	2.0	144	86	2	399	27	24	18	28	1.98
40895893--40896023	47	2.8	47	87	4	192	34	29	15	21	1.94
40900121--40900288	40	4.2	40	74	4	133	22	26	23	26	2.00
40905392--40905439	18	2.6	19	80	12	55	25	2	4	68	1.18
40907982--40908080	28	3.5	28	87	4	119	27	15	27	30	1.96
40910227--40910393	40	4.2	40	77	6	144	25	22	28	24	1.99
40913107--40913234	66	1.9	65	82	6	159	32	17	31	19	1.95
40921612--40921806	53	3.6	53	77	4	158	21	24	16	37	1.94
40921623--40921806	55	3.4	53	76	3	145	20	24	17	36	1.94
40921674--40921817	54	2.6	55	79	3	157	19	22	19	38	1.94
40924325--40924353	2	14.5	2	100	0	58	48	0	0	51	1.00
40926146--40926276	47	2.8	47	86	0	181	34	26	15	23	1.94
40927393--40927419	13	2.1	13	100	0	54	48	22	0	29	1.51
40939798--40939898	29	3.5	29	86	0	139	27	30	13	27	1.94
40939803--40939921	29	4.1	28	84	3	94	29	29	13	27	1.94
40944364--40944804	232	1.9	232	92	0	749	23	22	29	24	1.99
40947295--40947395	28	3.5	30	82	6	118	29	14	26	28	1.95
40947324--40947399	29	2.7	28	76	13	75	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40955183--40955283	28	3.5	30	82	6	118	29	14	26	28	1.95
40955212--40955287	29	2.7	28	76	13	75	30	14	26	28	1.95
40962053--40962089	14	2.8	13	88	11	58	21	5	10	62	1.48
40962809--40962846	19	2.0	19	85	10	51	18	10	0	71	1.14
40976727--40976832	40	2.7	37	86	5	131	21	30	25	22	1.99
40984558--40984665	40	2.7	38	85	8	128	21	29	25	23	1.99
40984517--40984665	80	1.9	80	81	2	183	22	30	24	22	1.99
40990372--40990423	23	2.3	23	89	0	77	46	15	17	21	1.84
40991028--40991072	20	2.3	19	84	3	54	20	40	31	8	1.83
40997141--40997198	29	2.0	30	82	3	73	48	20	12	18	1.80
41013871--41013934	31	2.1	31	90	0	101	25	23	15	35	1.94
41014128--41014317	24	8.0	24	88	4	269	25	21	23	28	1.99
41014153--41014317	47	3.5	47	92	1	267	26	21	24	28	1.99
41014142--41014318	71	2.5	72	89	2	277	25	21	23	29	1.99
41014376--41014432	9	5.9	9	73	15	51	35	21	8	35	1.84
41014372--41014434	20	3.2	20	95	0	117	31	19	12	36	1.89
41014471--41014518	25	1.9	25	82	0	60	25	14	25	35	1.94
41015644--41015864	27	8.2	27	85	4	302	40	9	23	26	1.86
41015644--41015864	108	2.0	108	98	0	424	40	9	23	26	1.86
41015843--41016038	27	7.3	27	83	5	184	32	8	19	40	1.81
41015644--41015891	108	2.3	108	92	0	370	39	10	22	27	1.86
41015842--41016038	81	2.4	81	81	5	204	31	8	19	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41018841--41018904	31	2.1	31	90	0	101	25	23	15	35	1.94
41019098--41019286	24	8.0	24	90	5	278	25	21	23	29	1.99
41019098--41019286	94	2.0	96	90	4	303	25	21	23	29	1.99
41019345--41019401	9	5.9	9	73	15	51	35	21	8	35	1.84
41019341--41019403	20	3.2	20	95	0	117	31	19	12	36	1.89
41019440--41019487	25	1.9	25	82	0	60	25	14	25	35	1.94
41020610--41020830	27	8.2	27	85	4	302	40	9	23	26	1.86
41020610--41020830	108	2.0	108	98	0	424	40	9	23	26	1.86
41020808--41021003	27	7.3	27	82	4	193	32	7	19	40	1.80
41023803--41023866	31	2.1	31	90	0	101	25	23	15	35	1.94
41024060--41024248	24	8.0	24	89	5	278	25	21	23	29	1.99
41024085--41024248	47	3.5	47	93	2	276	26	20	24	28	1.99
41024306--41024362	9	5.9	9	73	15	51	35	21	8	35	1.84
41024306--41024364	20	3.0	20	94	0	109	33	20	10	35	1.86
41024401--41024448	25	1.9	25	82	0	60	25	14	25	35	1.94
41025574--41025794	27	8.2	27	86	4	311	39	9	23	26	1.86
41025574--41025794	108	2.0	108	99	0	433	39	9	23	26	1.86
41025773--41025968	27	7.3	27	82	7	186	31	8	19	40	1.81
41025574--41025821	108	2.3	108	92	0	379	38	10	23	27	1.87
41025847--41025985	27	5.2	26	84	2	134	32	7	17	42	1.77
41031608--41031697	29	3.1	28	89	7	137	27	13	28	30	1.94
41039668--41039824	44	3.7	42	72	13	133	24	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41039679--41039824	43	3.4	42	80	6	143	22	16	27	33	1.95
41045255--41045288	17	1.9	18	94	5	61	35	5	5	52	1.50
41045455--41045513	25	2.4	22	76	20	55	49	0	6	44	1.29
41045308--41045543	127	1.9	126	84	5	323	46	7	4	41	1.52
41045931--41045955	13	1.9	13	100	0	50	8	8	20	64	1.46
41063166--41063285	28	4.3	28	91	0	177	21	15	35	28	1.93
41063601--41063833	27	8.6	27	80	4	229	36	18	12	33	1.87
41063787--41063848	27	2.3	27	94	0	106	40	9	14	35	1.79
41063787--41063878	27	3.4	27	83	3	105	38	14	16	31	1.88
41066260--41066400	24	6.0	24	89	5	216	25	21	24	28	1.99
41066260--41066400	47	3.0	47	90	3	212	25	21	24	28	1.99
41066449--41066515	20	3.3	20	93	0	116	32	20	11	34	1.90
41066449--41066504	11	5.5	11	71	16	57	32	19	12	35	1.89
41067668--41067728	27	2.2	28	91	2	97	16	26	21	36	1.94
41067759--41067970	27	7.8	27	77	5	149	31	9	19	39	1.83
41067973--41068253	27	10.4	27	82	5	257	41	6	24	27	1.80
41067973--41068246	54	5.1	54	83	1	307	41	6	22	28	1.79
41067979--41068253	81	3.4	81	91	1	426	41	6	24	28	1.80
41068250--41068348	27	3.7	27	81	5	112	30	10	20	39	1.85
41068242--41068346	54	2.0	53	81	9	124	30	10	21	37	1.87
41068259--41068363	27	3.9	27	75	9	72	34	9	18	38	1.83
41071389--41071419	16	1.9	16	93	0	53	41	16	0	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41072527--41072610	40	2.1	40	88	4	125	21	26	16	35	1.94
41072544--41072622	40	2.0	40	84	0	104	24	25	15	35	1.94
41081059--41081208	27	5.6	27	81	6	160	41	21	8	29	1.81
41081059--41081212	81	1.9	82	82	6	197	40	22	7	29	1.82
41081220--41081373	27	5.7	27	88	1	220	29	24	7	38	1.82
41081179--41081377	81	2.5	79	82	6	195	31	22	8	37	1.84
41081218--41081376	80	2.0	81	89	1	248	30	23	6	38	1.81
41081233--41081417	80	2.3	80	83	3	219	32	22	7	36	1.83
41081232--41081442	54	3.9	53	77	3	181	34	22	7	35	1.82
41081381--41081509	27	4.8	27	83	0	141	40	20	9	29	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345