genome.fa.s12.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  131  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35384638--35384850	108	2.0	109	82	3	261	36	17	25	21	1.95
35384967--35385000	12	3.0	12	91	8	54	50	0	17	32	1.47
35385707--35385963	128	2.0	128	98	0	496	30	21	13	34	1.92
35388325--35388374	27	1.9	25	84	8	64	70	0	10	20	1.16
35393720--35393792	25	2.9	25	83	0	101	24	23	24	27	2.00
35393857--35393897	11	3.8	11	93	3	66	34	19	9	36	1.85
35393822--35393897	21	3.6	21	75	8	66	34	18	10	36	1.85
35401912--35401983	25	2.9	25	91	0	117	22	20	26	30	1.98
35402029--35402087	21	2.9	21	87	2	75	30	20	10	38	1.86
35402049--35402095	10	4.7	10	94	5	78	31	19	10	38	1.86
35405370--35405626	40	6.4	40	90	2	367	22	22	28	26	1.99
35407143--35407181	20	2.0	20	89	0	60	48	15	0	35	1.45
35410148--35410442	143	2.1	141	98	1	563	21	10	29	38	1.87
35411087--35411195	29	3.8	28	89	3	146	32	14	28	24	1.95
35411086--35411206	57	2.1	57	87	1	170	32	15	28	23	1.95
35418219--35418479	39	6.7	39	87	3	332	19	20	29	30	1.97
35418257--35418479	39	5.7	39	89	3	333	19	20	29	30	1.97
35426259--35426514	38	6.7	39	88	4	341	19	21	29	29	1.98
35438517--35438608	29	3.1	29	84	1	103	28	31	13	27	1.93
35443392--35443435	20	2.3	20	88	7	65	18	29	36	15	1.92
35449440--35449480	15	2.7	15	92	3	64	78	0	19	2	0.87
35452029--35452157	35	3.7	35	84	2	152	38	13	17	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35453715--35453777	25	2.5	25	89	0	99	31	20	15	31	1.94
35455017--35455046	12	2.5	12	94	0	51	23	40	30	6	1.80
35461011--35461053	2	21.5	2	100	0	86	51	0	0	48	1.00
35462131--35462314	63	2.9	63	76	9	176	24	29	16	29	1.96
35463048--35463108	30	2.0	30	83	0	77	31	22	8	37	1.84
35465536--35465703	40	4.2	40	81	4	178	23	27	23	24	2.00
35473503--35473670	40	4.2	40	81	4	178	23	27	23	24	2.00
35481509--35481689	40	4.5	40	80	7	197	24	25	23	25	2.00
35481509--35481687	80	2.2	81	86	3	245	24	26	24	25	2.00
35482394--35482418	2	12.5	2	100	0	50	48	0	0	52	1.00
35484956--35485138	40	4.6	40	75	11	135	26	24	26	22	2.00
35486660--35486695	18	2.0	18	88	0	54	22	36	22	19	1.95
35486998--35487132	27	5.0	27	81	3	164	26	20	17	35	1.94
35487123--35487227	27	3.9	27	73	0	93	31	7	24	36	1.84
35490681--35490710	15	2.1	15	93	6	53	6	26	0	66	1.16
35492084--35492146	31	2.0	31	100	0	126	31	9	15	42	1.79
35494296--35494374	25	3.3	25	66	16	76	31	29	5	34	1.79
35494246--35494599	49	7.3	49	92	1	540	29	29	8	32	1.86
35500306--35500349	19	2.3	20	81	18	58	63	13	18	4	1.46
35503897--35503926	13	2.3	13	94	0	51	83	0	16	0	0.65
35503899--35503935	18	2.1	17	90	5	56	78	0	21	0	0.75
35508038--35508072	2	17.5	2	87	0	52	45	0	54	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35515560--35515592	5	6.8	5	89	3	50	81	0	18	0	0.68
35518441--35518790	175	2.0	175	100	0	700	27	14	9	48	1.76
35521146--35521199	3	17.7	3	85	11	74	33	0	1	64	1.04
35521169--35521252	25	3.5	24	75	15	68	35	5	1	57	1.31
35533860--35534265	128	3.2	126	86	5	523	36	21	21	20	1.95
35533854--35534397	43	12.8	43	69	15	244	36	20	22	20	1.95
35534151--35534381	82	2.7	86	85	8	323	34	21	23	20	1.97
35535561--35535718	79	2.0	79	100	0	316	46	11	10	31	1.73
35537682--35537738	27	2.1	28	83	3	71	43	3	15	36	1.64
35539756--35539823	2	34.0	2	100	0	136	50	0	0	50	1.00
35540149--35540377	116	2.0	116	90	1	361	40	7	5	46	1.55
35540253--35540550	138	2.1	140	88	3	451	40	7	5	46	1.53
35540342--35540550	69	3.0	70	64	19	166	42	6	5	45	1.53
35540802--35540930	63	2.0	63	100	0	258	34	20	15	30	1.93
35541476--35541537	29	2.1	31	83	16	80	54	14	6	24	1.63
35547801--35547870	27	2.6	27	90	2	113	31	27	12	28	1.93
35549502--35549738	49	4.8	49	86	3	305	28	27	18	25	1.98
35549607--35549686	26	3.2	26	62	27	64	30	28	17	23	1.97
35551867--35551931	15	4.4	15	78	16	73	63	13	13	9	1.53
35551867--35551935	30	2.3	31	83	14	92	60	17	13	8	1.56
35553764--35553912	80	1.9	80	81	2	183	22	30	24	22	1.99
35553805--35553912	40	2.7	38	85	8	128	21	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35560189--35560382	80	2.4	80	86	3	239	26	22	25	25	2.00
35560189--35560345	40	3.9	40	93	0	251	26	21	24	27	1.99
35563679--35563734	25	2.3	24	90	3	85	35	14	42	7	1.73
35570895--35571367	49	9.4	49	84	9	558	28	8	33	29	1.87
35571019--35571047	15	1.9	15	100	0	58	34	0	37	27	1.57
35570970--35571096	64	2.0	64	95	0	227	29	7	33	29	1.84
35570922--35571143	113	2.0	112	95	0	399	30	8	32	29	1.86
35571030--35571367	49	6.9	49	96	0	615	27	7	34	30	1.86
35571467--35571588	37	3.3	37	96	0	217	27	19	31	21	1.97
35573396--35573479	39	2.1	40	82	2	98	28	20	27	23	1.99
35573674--35573896	29	7.8	29	95	2	396	26	15	31	26	1.96
35573674--35573896	85	2.6	87	95	2	414	26	15	31	26	1.96
35574378--35574476	41	2.4	41	80	11	114	25	25	24	25	2.00
35577262--35577676	195	2.1	196	93	1	717	29	8	33	29	1.87
35577262--35577671	49	8.4	49	93	1	680	29	8	33	29	1.87
35577771--35577892	37	3.3	37	95	0	208	27	18	31	22	1.97
35582575--35582652	30	2.7	30	88	7	108	11	5	5	78	1.08
35582575--35582652	22	3.3	23	80	5	68	11	5	5	78	1.08
35590072--35590104	17	1.9	17	88	11	50	48	0	12	39	1.40
35592064--35592118	27	2.0	27	92	0	92	29	18	16	36	1.92
35595840--35595897	27	2.1	27	87	0	80	27	12	18	41	1.86
35597583--35597711	46	2.8	46	96	0	231	29	28	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35599727--35599815	40	2.2	40	86	4	117	20	30	16	32	1.95
35599797--35599859	20	3.1	21	73	17	69	19	31	19	30	1.96
35599797--35599874	40	2.0	40	84	0	102	16	35	19	28	1.93
35614085--35614111	7	3.9	7	100	0	54	14	55	0	29	1.40
35614084--35614118	14	2.5	14	85	0	52	20	48	0	31	1.50
35620940--35621057	41	3.1	41	60	28	98	32	17	28	21	1.96
35620908--35621071	71	2.3	71	100	0	328	35	17	28	18	1.94
35628515--35628632	41	3.1	41	60	28	98	32	17	28	21	1.96
35628483--35628646	71	2.3	71	100	0	328	35	17	28	18	1.94
35633182--35633254	15	4.9	15	86	0	101	58	16	13	10	1.62
35640157--35640249	28	3.3	28	95	0	159	34	25	7	32	1.84
35640355--35640522	28	6.1	28	82	5	184	15	22	23	38	1.92
35640355--35640522	27	6.1	27	83	5	178	15	22	23	38	1.92
35640355--35640522	55	3.1	55	90	2	250	15	22	23	38	1.92
35643080--35643131	20	2.6	20	75	22	63	19	26	25	28	1.98
35643151--35643202	20	2.6	19	72	6	50	13	36	21	28	1.91
35651143--35651269	42	3.0	43	81	9	152	21	16	29	32	1.95
35651157--35651269	43	2.7	42	82	9	131	22	17	29	30	1.97
35653443--35653570	42	3.0	42	79	6	141	33	25	17	23	1.96
35657738--35657892	40	3.9	40	89	3	215	23	25	27	23	2.00
35665755--35665905	40	3.8	40	80	6	155	26	23	27	22	2.00
35665792--35665921	40	3.3	39	78	11	147	23	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35671297--35671325	14	2.0	15	93	6	51	51	20	0	27	1.47
35676652--35676836	40	4.7	40	80	7	200	24	21	27	26	1.99
35676686--35676869	79	2.3	77	78	10	192	27	20	26	26	1.99
35698389--35698441	27	2.0	27	88	0	79	35	22	15	26	1.93
35698870--35698929	28	2.2	28	87	3	86	15	23	28	33	1.94
35700760--35700940	40	4.5	40	80	5	172	26	23	27	22	1.99
35700760--35700943	80	2.3	80	78	12	198	26	22	27	22	1.99
35707236--35707414	40	4.5	39	78	7	173	25	26	22	25	2.00
35707236--35707414	80	2.2	81	85	3	236	25	26	22	25	2.00
35709153--35709276	39	3.2	39	89	1	185	25	33	20	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345