genome.fa.s12.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  173  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48679026--48679077	20	2.7	19	79	5	59	55	5	3	34	1.42
48679107--48679153	7	5.9	8	76	18	53	76	0	0	23	0.78
48679107--48679154	16	2.9	16	90	3	69	77	0	0	22	0.78
48679454--48679493	21	1.9	21	89	0	62	52	15	12	20	1.74
48681342--48681382	2	20.5	2	94	0	73	48	0	0	51	1.00
48689659--48689757	28	3.5	29	82	6	114	28	15	26	30	1.96
48691471--48691617	78	1.9	78	92	0	249	27	21	31	19	1.98
48693010--48693113	44	2.4	43	81	1	109	32	12	22	32	1.91
48695311--48695401	37	2.4	37	94	1	155	26	32	17	23	1.96
48695441--48695640	48	4.2	48	96	0	364	32	28	6	33	1.81
48695633--48695881	49	4.9	49	81	13	304	29	28	8	33	1.87
48695586--48695882	157	1.9	153	85	6	402	29	28	8	33	1.87
48695774--48695799	12	2.2	12	100	0	52	26	34	0	38	1.57
48695727--48695848	61	2.0	61	98	0	235	28	27	7	36	1.84
48695730--48695827	31	3.2	31	66	28	91	27	28	9	34	1.88
48695682--48695881	110	1.8	108	91	2	328	29	27	9	34	1.87
48701061--48701130	27	2.6	27	93	2	113	31	27	14	27	1.95
48703342--48703401	27	2.2	27	96	0	111	41	13	11	33	1.80
48709941--48710019	40	2.0	40	89	0	122	32	32	17	16	1.93
48716979--48717071	25	3.7	25	94	0	150	24	22	26	25	2.00
48717278--48717415	27	5.2	27	82	6	156	26	21	17	34	1.95
48717276--48717415	53	2.6	53	85	2	183	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48717411--48717741	27	12.2	27	78	10	156	31	8	20	39	1.82
48717455--48717829	27	13.9	27	84	4	420	30	9	20	39	1.84
48721748--48721931	40	4.6	39	77	6	147	28	23	26	22	1.99
48730574--48730642	28	2.5	28	92	0	111	26	11	30	31	1.91
48730574--48730657	28	3.0	28	89	0	105	26	10	30	32	1.90
48740233--48740296	31	2.1	31	87	0	92	25	21	15	37	1.93
48740511--48740582	23	3.1	23	100	0	144	29	20	20	29	1.98
48740629--48740699	20	3.5	20	90	0	115	32	19	11	36	1.87
48740736--48740783	25	1.9	25	86	0	69	27	14	22	35	1.93
48741942--48742019	27	2.9	27	77	11	79	20	19	21	38	1.94
48742064--48742262	27	7.3	27	72	8	134	34	9	19	37	1.83
48742187--48742354	81	2.1	82	79	3	187	42	9	18	29	1.82
48742214--48742416	27	7.5	27	88	2	264	41	8	20	29	1.81
48742430--48742519	27	3.3	27	76	3	92	31	11	16	41	1.83
48742989--48743058	34	2.1	34	100	0	140	31	34	11	22	1.90
48744706--48744869	40	4.1	40	81	4	170	25	28	21	25	1.99
48744692--48744869	80	2.2	80	81	3	198	25	27	21	25	1.99
48752700--48752863	40	4.1	40	79	6	154	25	26	21	25	2.00
48756273--48756308	15	2.4	15	90	0	54	50	13	13	22	1.77
48762058--48762224	43	3.9	43	75	6	133	28	14	23	32	1.94
48771221--48771408	38	4.9	39	92	4	310	21	31	21	24	1.98
48779354--48779540	38	4.9	39	91	5	301	21	31	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48784401--48784530	28	4.6	27	82	13	154	26	24	13	34	1.93
48784401--48784559	58	2.8	57	88	5	214	27	25	13	33	1.94
48785865--48785900	18	1.9	18	88	5	54	11	25	0	63	1.27
48792511--48792611	28	3.5	28	86	6	114	29	13	26	29	1.94
48800462--48800562	28	3.5	28	86	6	114	29	13	26	29	1.94
48810231--48810341	50	2.2	53	93	4	192	43	7	21	27	1.79
48813130--48813515	193	2.0	193	94	1	684	37	19	5	37	1.76
48816167--48816198	17	1.9	16	93	6	55	50	3	3	43	1.33
48818723--48818997	134	2.1	134	88	3	412	15	24	14	45	1.84
48824955--48824990	18	2.0	18	100	0	72	33	5	27	33	1.80
48832067--48832279	47	4.6	45	77	14	186	22	28	20	28	1.98
48832017--48832373	94	3.8	94	77	8	300	21	28	21	29	1.98
48839643--48839813	47	3.7	46	72	12	152	23	28	19	29	1.98
48839639--48839904	94	2.8	94	82	6	283	22	29	19	27	1.98
48839643--48839905	47	5.6	47	70	16	138	22	29	19	28	1.98
48857589--48857891	48	6.3	48	92	0	507	35	5	28	30	1.81
48858032--48858134	37	2.8	37	95	0	179	24	20	31	24	1.98
48859410--48859650	40	6.0	40	91	1	374	21	22	29	26	1.99
48859410--48859647	82	3.0	80	90	2	368	22	22	28	26	1.99
48859410--48859650	122	2.0	120	90	1	374	21	22	29	26	1.99
48859814--48859864	25	2.0	25	81	7	59	35	13	29	21	1.92
48863015--48863171	48	3.3	48	96	1	289	36	5	28	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48863144--48863199	28	2.0	28	100	0	112	35	3	32	28	1.74
48863096--48863247	76	2.0	76	98	0	295	34	5	29	30	1.80
48863172--48863632	48	9.6	48	95	0	814	34	6	28	31	1.82
48863049--48863293	124	2.0	123	97	0	463	34	5	28	30	1.81
48863480--48863564	28	3.3	27	62	25	67	36	5	29	28	1.81
48863777--48863875	37	2.7	37	91	0	153	26	19	29	25	1.98
48865093--48865138	21	2.2	20	85	11	58	71	0	23	4	1.03
48865093--48865138	15	2.9	16	83	6	67	71	0	23	4	1.03
48870507--48870549	22	1.9	23	90	4	70	18	53	6	20	1.67
48882435--48882517	22	3.7	22	95	1	139	22	8	48	20	1.76
48885032--48885114	12	7.2	11	73	16	53	72	1	8	18	1.16
48887085--48887251	40	4.2	40	79	6	169	26	22	26	24	2.00
48895093--48895259	40	4.2	40	79	6	169	26	22	26	24	2.00
48900421--48900642	49	4.5	48	85	4	266	29	26	18	26	1.98
48902788--48902835	15	3.2	14	77	11	51	58	16	14	10	1.63
48905834--48906058	49	4.5	49	88	2	306	29	28	18	24	1.98
48905821--48906065	99	2.5	100	85	2	323	28	28	18	24	1.98
48905821--48906066	101	2.5	99	85	2	332	28	28	18	24	1.98
48910256--48910330	36	2.1	36	100	0	150	54	5	18	21	1.63
48917304--48917378	37	2.0	38	94	2	134	33	0	41	25	1.56
48919288--48919354	34	2.0	34	81	0	80	34	22	20	22	1.97
48921120--48921175	24	2.4	23	82	5	67	66	3	5	25	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48927867--48927974	43	2.5	43	84	3	137	35	23	13	27	1.93
48929841--48930065	79	2.8	79	83	7	285	25	26	22	25	2.00
48929841--48930064	119	1.9	120	83	8	296	25	26	22	25	2.00
48929822--48930065	40	6.1	40	85	6	284	25	26	22	25	2.00
48932197--48932297	28	3.5	28	86	6	114	28	13	27	29	1.95
48932226--48932297	29	2.5	28	91	6	110	29	13	27	29	1.95
48941058--48941279	40	5.7	39	85	9	267	25	27	22	25	2.00
48941058--48941279	78	2.8	78	85	8	290	25	27	22	25	2.00
48948954--48949412	49	9.4	49	92	0	693	32	9	28	28	1.89
48949481--48949567	37	2.3	36	94	5	147	20	19	33	26	1.97
48956381--48956540	29	5.5	29	82	4	180	26	16	31	25	1.97
48964431--48964590	29	5.5	29	82	4	180	26	16	31	25	1.97
48966694--48966753	29	2.0	29	83	3	75	31	23	8	36	1.84
48972595--48972722	30	4.2	30	84	6	152	48	14	17	18	1.81
48972668--48972759	43	2.1	43	93	0	157	46	17	19	16	1.84
48972615--48972734	6	19.8	6	78	14	131	49	15	17	18	1.80
48972891--48972992	27	3.8	26	87	5	123	36	20	23	19	1.95
48973151--48973215	22	3.0	22	80	8	78	33	23	23	20	1.97
48973632--48973719	27	3.3	26	85	7	115	23	19	20	36	1.95
48973703--48973853	54	2.8	51	76	8	140	26	7	23	41	1.82
48973677--48973853	27	6.7	26	72	10	117	25	10	23	40	1.86
48973729--48973867	27	5.3	24	76	12	66	28	10	23	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48973847--48974053	27	7.7	27	84	2	238	37	7	23	31	1.82
48973845--48974053	81	2.6	80	85	5	287	37	7	22	31	1.83
48976041--48976172	6	21.8	6	75	16	121	50	15	15	18	1.78
48976021--48976197	30	6.0	29	76	14	150	49	15	16	18	1.80
48976070--48976190	55	2.2	55	92	0	197	49	15	16	18	1.80
48976329--48976430	27	3.8	26	85	5	114	36	19	23	20	1.95
48976589--48976653	22	3.0	22	80	8	78	33	23	23	20	1.97
48977070--48977157	27	3.3	26	85	7	115	23	19	20	36	1.95
48977141--48977291	54	2.8	51	76	8	140	26	7	23	41	1.82
48977115--48977291	27	6.7	26	72	10	117	25	10	23	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345