genome.fa.s12.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  156  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43176385--43176413	14	2.0	15	93	6	51	41	13	0	44	1.44
43177394--43177458	32	2.0	32	100	0	130	30	20	12	36	1.89
43179378--43179520	25	5.8	25	70	8	80	34	23	24	18	1.96
43180744--43181039	50	5.9	50	78	5	276	26	17	25	30	1.97
43180795--43180976	101	1.8	101	92	0	310	26	19	24	29	1.98
43180795--43181039	101	2.4	101	84	1	305	26	19	24	29	1.98
43180790--43181071	150	1.9	151	85	0	395	26	18	25	29	1.98
43195993--43196078	42	2.0	42	97	0	163	40	12	16	30	1.86
43195704--43197224	506	3.0	506	99	0	2979	35	14	17	32	1.90
43196499--43196584	42	2.0	42	97	0	163	40	12	16	30	1.86
43197000--43197090	42	2.2	42	91	0	155	40	14	17	27	1.88
43198402--43198444	7	6.1	7	91	0	68	60	11	25	2	1.43
43202948--43202993	1	46.0	1	82	0	56	91	0	8	0	0.43
43202948--43202993	20	2.3	20	92	7	76	91	0	8	0	0.43
43210137--43210204	27	2.5	27	92	0	109	30	27	14	26	1.95
43212233--43212261	14	2.1	14	100	0	58	51	41	0	6	1.28
43212259--43212283	2	12.5	2	100	0	50	52	0	0	48	1.00
43217524--43217650	39	3.2	39	89	2	182	21	21	29	28	1.98
43217524--43217668	79	1.8	78	80	4	175	21	22	28	26	1.99
43224144--43224259	39	3.0	39	94	0	196	21	19	30	28	1.98
43224151--43224295	39	3.7	39	88	4	152	20	20	32	26	1.97
43224151--43224300	78	1.9	78	83	5	196	20	20	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43229896--43229996	28	3.5	28	86	6	114	29	26	13	29	1.94
43237038--43237138	28	3.5	28	83	6	105	29	26	12	30	1.93
43243383--43243469	34	2.6	34	83	3	95	26	26	24	22	2.00
43244946--43245069	43	2.9	43	85	4	126	33	29	13	24	1.93
43246435--43246596	86	1.9	85	83	6	211	24	16	25	33	1.96
43246433--43246604	43	4.0	43	77	11	165	23	16	26	33	1.96
43249616--43249823	40	5.2	40	83	0	209	25	23	25	25	2.00
43249617--43249823	80	2.6	80	83	4	247	25	23	26	25	2.00
43252578--43252641	31	2.1	31	87	0	92	25	21	15	37	1.93
43252665--43252748	42	2.0	42	86	4	116	41	20	11	26	1.86
43252895--43253136	47	5.1	47	92	1	403	26	21	23	28	1.99
43252895--43253135	24	10.2	24	87	3	355	26	21	23	28	1.99
43252895--43253136	95	2.6	94	93	1	430	26	21	23	28	1.99
43253181--43253231	20	2.5	20	93	0	84	31	21	11	35	1.90
43253268--43253315	25	1.9	25	82	0	60	25	14	25	35	1.94
43254471--43254548	27	2.9	27	79	11	88	21	20	21	35	1.96
43254567--43254807	27	8.9	27	76	5	184	32	7	19	39	1.81
43254566--43254816	53	4.6	54	76	10	183	31	8	20	39	1.83
43254594--43254870	27	10.3	27	77	8	152	34	7	20	37	1.82
43254566--43254816	80	3.1	79	75	9	229	31	8	20	39	1.83
43254794--43255005	27	7.9	27	86	4	266	40	8	23	27	1.84
43254795--43254998	54	3.8	54	88	2	293	40	9	22	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43255011--43255100	27	3.3	27	84	3	101	33	10	16	40	1.82
43255030--43255109	27	2.9	27	85	5	99	33	10	16	40	1.82
43255011--43255115	27	3.9	27	78	9	90	35	9	16	39	1.81
43257797--43257860	31	2.1	31	90	0	101	25	23	15	35	1.94
43257886--43257973	41	2.1	41	81	8	99	42	19	10	28	1.84
43258111--43258321	23	9.1	23	88	5	293	26	21	23	28	1.99
43258109--43258322	93	2.3	94	91	4	364	26	21	22	28	1.99
43258368--43258418	20	2.5	20	93	0	84	31	21	11	35	1.90
43258455--43258502	25	1.9	25	82	0	60	25	14	25	35	1.94
43259655--43259732	27	2.9	26	78	14	86	21	19	21	37	1.95
43259751--43259985	27	8.7	27	76	7	210	32	8	19	40	1.80
43259750--43260026	54	5.2	52	75	6	196	33	8	19	37	1.83
43259750--43259984	80	2.9	81	77	8	237	32	8	19	40	1.81
43259751--43259985	107	2.2	108	80	6	255	32	8	19	40	1.80
43259778--43260053	27	10.3	27	78	6	157	34	7	19	37	1.81
43259949--43260204	81	3.2	81	76	6	241	38	8	22	30	1.85
43259977--43260187	27	7.9	27	86	5	275	39	9	23	27	1.85
43260193--43260280	26	3.3	27	82	7	92	32	9	17	40	1.80
43260211--43260289	27	2.9	27	83	7	90	34	8	16	40	1.80
43261833--43261891	28	2.1	28	83	3	73	30	18	5	45	1.71
43264604--43264663	27	2.3	26	82	2	66	36	20	21	21	1.95
43264660--43264699	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43274739--43274824	27	3.2	28	83	8	99	37	22	25	15	1.93
43282481--43282592	27	4.2	26	84	10	136	36	23	24	16	1.94
43282481--43282592	54	2.1	54	88	3	163	36	23	24	16	1.94
43288876--43288979	44	2.4	44	88	0	145	30	17	26	25	1.97
43296291--43296607	47	6.7	47	95	0	544	32	10	29	27	1.90
43297898--43298073	46	3.8	46	81	10	232	20	21	29	28	1.98
43297894--43298065	93	1.8	93	96	0	317	20	22	30	27	1.98
43300986--43301054	15	4.6	15	83	0	84	11	17	13	57	1.64
43300977--43301064	30	3.0	30	81	8	99	10	17	15	56	1.66
43303448--43303623	46	3.8	46	81	10	232	20	21	29	28	1.98
43303444--43303615	93	1.8	93	96	0	317	20	22	30	27	1.98
43304953--43305028	22	3.3	22	67	16	64	31	11	31	25	1.91
43304928--43305056	47	2.7	47	95	0	222	34	7	31	27	1.85
43310162--43310252	37	2.4	37	92	1	155	24	32	18	24	1.97
43310348--43310562	49	4.4	49	95	0	376	29	32	9	29	1.88
43310562--43310611	14	3.6	14	80	15	59	40	14	4	42	1.64
43318734--43318842	42	2.6	42	82	8	141	29	16	22	31	1.96
43319187--43319236	17	2.7	19	78	12	59	54	6	0	40	1.25
43324081--43324110	14	2.1	14	100	0	60	23	20	26	30	1.98
43327414--43327459	17	2.5	19	82	13	60	58	6	0	34	1.24
43330356--43330539	40	4.6	39	79	6	174	26	23	27	22	2.00
43332307--43332409	29	3.6	29	77	2	82	25	33	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43339023--43339097	29	2.6	28	81	6	78	26	36	16	21	1.94
43339860--43339960	50	2.0	50	100	0	202	22	27	17	31	1.97
43344655--43344684	15	2.0	15	100	0	60	26	13	26	33	1.93
43354241--43354322	23	3.6	23	80	15	107	35	19	23	21	1.96
43354239--43354332	46	2.1	46	92	6	156	34	19	24	22	1.97
43354239--43354332	45	2.1	45	92	6	154	34	19	24	22	1.97
43361088--43361130	22	1.9	23	81	13	54	46	9	30	13	1.75
43370335--43370584	40	6.2	40	90	1	385	25	24	28	22	1.99
43375386--43375497	40	2.8	40	94	0	188	25	28	20	25	1.99
43377627--43377829	49	4.2	49	91	3	297	29	30	7	32	1.86
43381246--43381357	40	2.8	40	94	0	188	25	28	20	25	1.99
43383490--43383692	49	4.2	49	91	3	297	29	30	7	32	1.86
43389053--43389093	2	20.5	2	84	0	55	48	0	48	2	1.14
43390503--43390574	37	1.9	37	100	0	144	33	16	13	36	1.89
43391994--43392034	13	3.4	12	81	18	50	0	26	2	70	0.99
43392099--43392157	19	3.1	19	73	14	59	50	6	0	42	1.28
43392602--43392646	20	2.2	20	84	4	54	42	2	6	48	1.41
43395513--43395555	20	2.2	20	91	0	68	25	30	23	20	1.99
43403625--43403670	23	2.0	23	83	12	58	13	19	26	41	1.88
43405874--43405988	43	2.7	43	86	1	160	32	23	17	26	1.97
43407424--43407457	16	2.1	16	89	10	52	41	0	11	47	1.40
43415570--43415626	26	2.2	26	80	3	60	28	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43423773--43423810	17	2.2	17	100	0	76	39	5	23	31	1.77
43424756--43424857	31	3.1	32	79	17	118	23	22	15	38	1.93
43424733--43424840	38	2.8	38	91	1	171	22	23	15	38	1.92
43425049--43425143	24	4.0	24	85	10	124	26	24	21	28	1.99
43425049--43425142	47	2.0	49	85	12	133	26	24	21	27	1.99
43425194--43425253	20	3.0	20	90	0	102	31	20	11	36	1.88
43425296--43425343	25	1.9	25	91	0	78	25	14	25	35	1.94
43431671--43431779	46	2.4	46	87	0	146	27	30	6	35	1.82
43431800--43432087	47	6.1	47	92	0	477	26	28	11	33	1.92
43433876--43433907	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345