genome.fa.s12.2.7.7.80.10.50.1000.323.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  323  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96861294--96861322	6	4.8	6	100	0	58	82	0	0	17	0.66
96862597--96862623	3	9.0	3	100	0	54	0	33	0	66	0.92
96862643--96862908	135	2.0	135	88	0	397	25	27	13	33	1.94
96871151--96871285	58	2.3	57	82	5	164	43	0	3	51	1.24
96871633--96871709	27	2.9	27	92	0	118	23	24	27	24	2.00
96877921--96877966	2	23.0	2	100	0	92	50	0	0	50	1.00
96878319--96878441	60	2.0	61	92	1	203	56	9	0	33	1.32
96878595--96878649	13	4.2	13	80	19	69	0	30	0	69	0.89
96878594--96878646	27	1.9	27	85	11	72	0	30	0	69	0.88
96879212--96879282	16	4.4	16	85	0	88	30	26	5	36	1.80
96885092--96885123	15	2.1	15	94	0	55	50	21	6	21	1.71
96887796--96888012	40	5.4	40	87	2	296	25	27	21	25	1.99
96892409--96892452	6	7.3	6	100	0	88	34	0	65	0	0.93
96893244--96893269	13	2.0	13	100	0	52	38	7	53	0	1.30
96897928--96898003	32	2.4	32	80	4	82	30	3	15	50	1.63
96900367--96900518	67	2.2	69	79	10	170	32	16	28	21	1.95
96907191--96907282	45	2.1	44	87	6	132	29	3	7	59	1.41
96908708--96908759	16	3.2	16	77	0	59	46	3	21	28	1.69
96908952--96908994	21	2.1	20	86	4	59	60	2	0	37	1.10
96909157--96909191	13	2.8	12	87	8	52	62	0	5	31	1.18
96909157--96909191	12	2.8	13	91	8	56	62	0	5	31	1.18
96909265--96909289	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96915930--96915964	15	2.3	15	90	9	54	80	0	20	0	0.72
96916627--96916657	3	10.3	3	100	0	62	67	0	0	32	0.91
96916716--96916765	9	5.8	9	81	9	50	32	0	2	66	1.03
96916724--96916764	8	5.0	8	88	5	55	31	0	2	65	1.05
96916716--96916765	17	2.9	17	87	3	64	32	0	2	66	1.03
96916759--96916801	20	2.2	20	87	4	61	48	4	0	46	1.22
96916804--96916867	20	3.4	19	85	6	85	40	0	1	57	1.08
96916799--96916860	20	3.2	20	88	9	92	41	0	1	56	1.09
96917008--96917046	9	4.3	9	83	0	51	41	15	12	30	1.85
96917008--96917046	18	2.2	18	95	0	69	41	15	12	30	1.85
96917024--96917072	23	2.2	21	86	13	64	42	12	6	38	1.67
96925944--96925987	19	2.2	20	84	11	56	59	0	4	36	1.18
96925958--96926021	24	2.8	24	81	9	62	59	0	0	40	0.97
96925959--96926042	44	1.9	43	85	7	116	60	0	1	38	1.04
96925992--96926040	19	2.5	20	77	6	57	63	0	2	34	1.06
96926029--96926053	5	5.0	5	100	0	50	80	0	0	20	0.72
96927813--96927902	35	2.6	35	85	0	126	40	32	11	16	1.84
96937157--96937203	19	2.4	19	79	13	51	29	2	61	6	1.32
96937248--96937299	25	2.0	26	89	10	81	34	0	3	61	1.14
96937254--96937311	25	2.4	24	77	8	64	34	1	3	60	1.24
96937924--96937949	2	13.0	2	100	0	52	50	0	0	50	1.00
96939878--96940158	140	2.0	139	99	0	553	32	20	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96943268--96943299	5	6.6	5	92	7	57	18	0	0	81	0.70
96943268--96943298	9	3.3	9	91	8	53	19	0	0	80	0.71
96947721--96947752	5	6.6	5	92	7	57	18	0	0	81	0.70
96947721--96947751	9	3.3	9	91	8	53	19	0	0	80	0.71
96948788--96948831	22	2.0	22	100	0	88	18	13	9	59	1.60
96961606--96961733	39	3.3	39	89	0	202	21	27	20	30	1.98
96963323--96963355	16	2.1	16	100	0	66	63	24	6	6	1.40
96964248--96964308	29	2.1	29	93	0	104	32	11	29	26	1.91
96967872--96967930	23	2.5	22	75	20	57	55	1	3	38	1.26
96971996--96972039	22	2.0	22	86	0	61	52	0	0	47	1.00
96972059--96972100	13	2.9	14	80	13	50	54	0	0	45	0.99
96972063--96972099	16	2.3	16	86	13	58	59	0	0	40	0.97
96976001--96976029	7	4.1	7	100	0	58	72	0	13	13	1.13
96976182--96976233	15	3.2	15	73	19	50	55	1	0	42	1.10
96980702--96980813	55	2.0	55	96	0	206	37	11	16	33	1.85
96982655--96982708	22	2.5	22	90	6	83	31	5	46	16	1.70
96986525--96986781	121	2.1	121	99	0	505	22	32	14	29	1.94
96987030--96987056	10	2.7	10	100	0	54	29	0	33	37	1.58
96989752--96989813	27	2.3	27	86	2	81	32	11	12	43	1.79
96993557--96993600	22	1.9	24	86	9	65	27	4	9	59	1.48
96996573--96996600	14	2.0	14	100	0	56	35	7	21	35	1.81
97004300--97004374	37	2.0	37	97	0	141	32	20	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97006876--97006934	16	3.4	16	71	24	57	25	3	5	66	1.28
97006868--97006934	20	3.5	20	74	15	79	25	4	4	65	1.30
97006868--97006941	36	2.1	36	100	0	148	25	5	5	63	1.37
97009863--97010053	40	4.8	40	85	5	244	23	21	28	26	1.99
97015436--97015487	16	3.3	15	84	10	68	42	3	23	30	1.72
97015663--97015768	20	4.8	21	66	21	58	57	2	0	38	1.20
97015674--97015704	7	4.6	7	92	8	55	70	0	0	29	0.87
97015855--97016023	83	2.0	83	98	0	329	23	19	4	52	1.65
97017711--97017739	15	1.9	15	100	0	58	48	20	3	27	1.66
97023125--97023159	18	1.9	18	88	0	52	14	14	0	71	1.15
97027378--97027421	18	2.4	18	81	11	54	61	6	0	31	1.22
97027860--97027997	72	2.0	71	85	8	194	50	5	3	39	1.44
97027869--97028016	68	2.1	71	80	9	162	52	5	3	39	1.41
97028766--97028797	5	6.6	5	92	7	57	81	0	0	18	0.70
97028767--97028797	9	3.3	9	95	4	53	80	0	0	19	0.71
97031985--97032091	47	2.3	46	82	7	137	35	21	16	26	1.95
97032851--97032879	4	7.2	4	100	0	58	0	24	0	75	0.80
97036724--97036831	55	2.0	55	98	0	207	35	14	11	38	1.82
97040739--97040856	62	1.9	62	96	0	218	27	11	24	35	1.91
97049012--97049039	2	14.0	2	100	0	56	50	0	0	50	1.00
97050140--97050197	30	1.9	30	89	0	89	22	36	27	13	1.92
97057175--97057466	62	4.7	62	93	0	487	36	6	8	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97057453--97057484	8	4.0	8	95	0	55	28	0	21	50	1.49
97058676--97058710	14	2.5	14	95	0	61	37	5	20	37	1.76
97060940--97061040	31	3.3	30	84	6	132	11	33	32	21	1.90
97061504--97061548	23	2.0	23	86	0	63	33	2	0	64	1.06
97061564--97061650	40	2.1	41	87	2	122	22	1	9	66	1.27
97062707--97062734	2	14.0	2	100	0	56	50	0	0	50	1.00
97065248--97065276	5	5.8	5	100	0	58	17	0	0	82	0.66
97066277--97066309	2	17.0	2	93	6	59	51	0	0	48	1.00
97066363--97066391	12	2.3	13	94	5	51	75	0	24	0	0.80
97068574--97068730	43	3.7	43	82	4	192	33	25	15	25	1.96
97072091--97072117	7	3.9	7	100	0	54	59	0	0	40	0.98
97078558--97078875	164	1.9	164	86	0	447	26	21	12	39	1.89
97078735--97079134	109	3.7	109	83	3	448	27	20	12	40	1.88
97078794--97079342	34	15.1	35	66	15	141	28	18	11	41	1.86
97078994--97079314	39	8.8	38	68	14	158	29	19	9	42	1.82
97079048--97079207	73	2.2	73	86	4	225	30	20	8	41	1.82
97079119--97079342	109	2.1	109	83	1	279	29	18	10	42	1.83
97079621--97079659	2	19.5	2	94	0	69	46	0	0	53	1.00
97080631--97080655	2	12.5	2	100	0	50	48	0	0	52	1.00
97081007--97081041	2	17.5	2	93	0	61	48	0	0	51	1.00
97081043--97081082	4	10.5	4	84	10	57	27	0	25	47	1.52
97081007--97081108	8	12.6	8	78	10	55	36	0	12	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97081523--97081724	67	3.0	67	99	0	395	31	11	16	40	1.84
97083796--97083834	7	5.6	7	100	0	78	15	12	28	43	1.83
97083875--97083899	7	3.6	7	100	0	50	12	0	0	88	0.53
97086419--97086469	4	12.8	4	79	8	59	43	27	5	23	1.77
97086421--97086467	12	3.9	12	88	0	76	42	27	6	23	1.78
97088345--97088395	25	2.0	25	100	0	102	37	19	3	39	1.70
97090097--97090123	5	5.4	5	100	0	54	0	0	81	18	0.69
97096896--97096922	6	4.5	6	100	0	54	85	0	0	14	0.61
97096881--97096924	11	3.9	11	85	5	61	79	0	4	15	0.89
97098718--97098764	24	1.9	25	86	4	69	61	0	31	6	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345