genome.fa.s12.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  152  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41590204--41590357	79	1.9	79	81	5	186	27	21	25	25	1.99
41611661--41611832	47	3.7	47	82	10	244	27	29	20	22	1.99
41611607--41611782	46	3.8	46	81	10	232	28	29	21	20	1.98
41611615--41611834	93	2.4	93	96	0	395	27	29	21	21	1.99
41614353--41614529	39	4.5	39	94	1	291	26	29	24	19	1.98
41614353--41614646	78	3.7	78	81	7	217	26	27	22	22	1.99
41614522--41614653	39	3.4	39	91	2	203	25	25	18	29	1.98
41614345--41614653	117	2.6	118	77	7	281	26	27	22	23	1.99
41636853--41636897	19	2.3	19	85	11	56	73	6	2	17	1.15
41637243--41637295	16	3.4	15	82	14	63	77	1	0	20	0.87
41637246--41637295	15	3.1	15	83	13	57	78	2	0	20	0.86
41638886--41639055	69	2.5	69	88	5	256	31	18	5	43	1.74
41640358--41640391	18	1.9	17	94	5	59	8	17	8	64	1.47
41641598--41641644	20	2.3	20	88	0	67	36	12	21	29	1.91
41641693--41641846	24	6.4	24	89	5	240	31	19	21	27	1.97
41642053--41642116	31	2.1	31	90	0	101	35	15	23	25	1.94
41643907--41644345	47	9.4	47	92	0	702	28	30	8	33	1.86
41644122--41644196	22	3.3	22	68	14	71	26	30	10	32	1.90
41643907--41644345	187	2.3	187	92	0	709	28	30	8	33	1.86
41648827--41648859	16	2.0	17	88	5	50	33	6	3	57	1.38
41649749--41649955	40	5.2	41	87	3	192	29	24	19	26	1.99
41655620--41655668	18	2.6	17	76	17	53	48	6	0	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41655846--41655876	16	1.9	16	93	0	53	48	0	0	51	1.00
41659116--41659155	21	1.9	21	84	0	53	22	40	2	35	1.68
41666414--41667095	47	14.2	47	86	7	942	33	8	29	27	1.87
41666461--41666536	22	3.3	22	66	16	64	32	10	30	26	1.90
41666725--41666762	16	2.4	16	95	0	67	34	0	28	36	1.58
41666678--41666809	63	2.1	63	98	0	255	34	6	29	30	1.82
41666631--41666856	110	2.1	110	94	0	398	33	7	29	29	1.85
41666725--41666767	16	2.6	17	85	14	63	34	0	30	34	1.58
41666585--41666903	157	2.0	156	96	0	593	34	7	29	28	1.85
41669043--41669155	38	3.0	38	84	5	147	29	15	29	25	1.96
41669213--41669403	40	4.8	40	90	0	301	21	23	28	26	1.99
41669572--41669626	25	2.2	25	87	6	76	30	12	29	27	1.93
41669611--41669764	28	5.5	28	67	11	118	22	20	28	29	1.98
41669609--41669795	56	3.3	56	97	0	356	21	19	30	28	1.97
41669638--41669792	28	5.5	28	67	6	116	20	19	32	27	1.97
41672744--41672868	25	5.2	25	62	18	77	35	6	28	29	1.82
41672719--41673341	47	13.3	47	92	0	1032	33	8	29	27	1.87
41672769--41672844	22	3.3	22	66	16	64	32	10	30	26	1.90
41675289--41675442	27	5.5	27	82	4	173	28	14	25	31	1.95
41675339--41675442	55	1.9	55	100	0	208	26	13	24	35	1.92
41683145--41683298	27	5.5	27	82	4	173	28	14	25	31	1.95
41683195--41683298	55	1.9	55	100	0	208	26	13	24	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41686230--41686332	29	3.6	28	81	5	116	21	16	33	29	1.95
41691188--41691250	33	1.9	33	100	0	126	25	15	19	39	1.91
41692409--41692509	28	3.5	28	86	6	114	29	13	26	29	1.94
41694191--41694272	44	1.9	42	85	5	110	19	17	29	34	1.94
41697360--41697422	21	2.9	22	79	11	58	61	1	0	36	1.05
41697378--41697419	21	2.0	22	86	13	63	59	0	0	40	0.97
41697378--41697419	20	2.0	21	86	13	61	59	0	0	40	0.97
41697384--41697493	11	10.1	12	66	20	55	61	0	0	37	1.02
41697451--41697497	6	7.7	6	81	13	51	55	0	0	44	0.99
41697435--41697493	23	2.6	22	76	7	64	59	0	0	40	0.97
41697435--41697486	17	2.9	17	75	13	52	59	0	0	40	0.97
41699499--41699546	24	2.0	24	88	4	71	45	8	10	35	1.68
41699564--41699702	69	2.0	69	88	5	210	39	8	7	43	1.65
41701688--41701727	20	2.0	21	85	14	57	52	5	32	10	1.56
41714805--41714855	19	2.7	18	77	19	59	15	9	7	66	1.43
41723477--41723538	32	1.9	32	83	6	81	32	0	4	62	1.16
41730439--41730602	44	3.6	44	82	11	211	27	21	18	31	1.97
41730435--41730595	51	3.3	51	83	11	237	26	21	18	33	1.96
41736951--41737035	37	2.3	37	91	0	134	31	22	17	28	1.97
41743456--41743507	20	2.6	20	90	0	86	55	0	23	21	1.43
41747284--41747322	18	2.2	17	86	4	51	74	0	7	17	1.05
41755430--41755582	40	3.8	40	82	6	168	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41755430--41755598	80	2.1	80	82	7	202	26	21	26	26	1.99
41759097--41759166	27	2.6	27	93	2	113	31	27	12	28	1.93
41765463--41765555	48	1.9	48	86	6	134	56	2	6	34	1.37
41765458--41765557	24	4.0	24	75	12	96	55	2	8	35	1.41
41765731--41765759	2	14.5	2	100	0	58	51	0	0	48	1.00
41767426--41767459	16	2.2	15	94	5	59	73	0	8	17	1.08
41767523--41767566	16	2.8	16	85	0	61	34	6	0	59	1.24
41768440--41768500	30	2.0	30	93	0	104	39	19	13	27	1.89
41770600--41770692	24	3.8	25	77	8	84	30	20	22	26	1.98
41774131--41774180	8	6.2	8	80	0	55	48	18	24	10	1.78
41774126--41774174	24	2.0	25	92	4	82	44	20	24	10	1.82
41774391--41774503	29	4.0	28	83	2	127	26	14	30	29	1.95
41774406--41774514	58	1.9	57	86	1	155	26	14	30	28	1.95
41776955--41777055	28	3.5	28	86	6	114	29	13	26	29	1.94
41784879--41784979	28	3.5	28	86	6	114	29	13	26	29	1.94
41793916--41794073	40	4.0	40	92	0	262	29	28	19	22	1.98
41796863--41796991	42	3.0	42	78	2	150	30	26	13	30	1.94
41798588--41798647	30	2.0	30	100	0	120	26	23	10	40	1.86
41803555--41803652	42	2.3	42	100	0	196	29	15	33	21	1.94
41803638--41803796	29	5.5	30	88	8	213	33	14	25	27	1.94
41803638--41803796	59	2.8	57	88	5	214	33	14	25	27	1.94
41813359--41813554	39	5.0	39	92	3	313	26	19	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41813359--41813594	78	3.0	78	88	3	314	25	19	31	23	1.98
41813361--41813631	78	3.4	78	86	7	266	25	19	30	23	1.98
41830674--41830726	10	4.7	12	79	15	60	43	13	0	43	1.43
41830674--41830716	18	2.4	18	88	7	61	44	11	0	44	1.40
41833451--41833575	48	2.6	48	82	7	148	23	16	25	34	1.95
41841387--41841519	27	4.9	27	83	0	131	24	14	18	42	1.88
41844079--41844112	18	1.9	17	94	5	59	8	17	8	64	1.47
41846224--41846622	49	8.3	49	91	2	612	29	29	8	32	1.87
41846224--41846622	145	2.8	145	93	1	649	29	29	8	32	1.87
41849477--41849524	25	1.9	25	86	0	69	33	25	16	25	1.96
41849566--41849623	20	2.8	20	89	2	80	36	13	20	29	1.91
41849572--41849624	11	5.2	11	69	17	51	37	15	18	28	1.91
41849673--41849725	25	2.1	25	96	3	97	35	18	18	26	1.95
41849673--41849742	25	2.8	25	84	6	79	31	21	22	24	1.98
41849937--41850000	31	2.1	31	90	0	101	35	15	23	25	1.94
41856365--41856398	18	1.9	17	94	5	59	8	17	8	64	1.47
41857519--41857566	25	1.9	25	86	0	69	33	25	16	25	1.96
41857614--41857669	11	5.5	11	71	16	57	37	14	19	28	1.91
41857603--41857669	20	3.3	20	89	0	98	35	13	20	29	1.91
41857718--41857885	24	7.0	24	89	7	234	29	19	21	29	1.98
41858077--41858140	31	2.1	31	88	5	94	34	15	23	26	1.95
41861795--41861842	17	2.8	18	81	6	55	27	16	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41872567--41872774	53	3.9	54	83	4	235	26	15	25	32	1.96
41877200--41877403	54	3.9	54	81	9	212	25	14	25	33	1.95
41877358--41877462	47	2.2	47	86	1	138	26	14	25	33	1.94
41882928--41882979	6	9.0	6	87	8	81	15	1	0	82	0.75
41882930--41883042	5	21.8	5	75	16	65	21	2	0	75	0.98
41887802--41887855	23	2.3	23	84	9	65	35	0	9	55	1.32
41887976--41888044	36	1.9	36	87	0	102	34	17	20	27	1.95
41893151--41893406	40	6.5	40	86	5	335	24	23	28	24	2.00
41896830--41896941	40	2.8	40	83	0	125	22	26	23	27	1.99
41904551--41904600	18	2.7	19	73	14	52	32	26	0	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345