genome.fa.s12.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  166  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46392642--46392821	96	1.8	96	86	8	256	23	30	19	26	1.98
46392739--46393005	46	5.7	44	74	14	159	23	28	18	28	1.98
46392643--46393002	94	3.8	94	74	12	278	23	29	19	28	1.98
46392745--46393002	138	1.8	140	81	5	324	24	28	18	29	1.98
46399202--46399352	40	3.8	40	77	13	134	27	23	26	22	2.00
46399238--46399368	40	3.3	40	79	2	156	25	23	27	23	2.00
46408114--46408245	59	2.3	58	84	4	158	25	31	15	27	1.96
46408163--46408245	29	2.9	29	100	0	166	26	28	14	30	1.95
46422919--46423095	40	4.5	40	87	6	236	24	22	27	25	2.00
46435719--46435848	27	4.8	27	81	7	147	36	19	19	24	1.94
46435720--46435848	54	2.4	54	88	0	177	37	19	18	24	1.94
46442772--46442857	28	3.0	28	80	10	95	33	19	20	25	1.97
46446764--46446885	37	3.3	37	95	0	217	20	33	20	25	1.97
46446987--46447202	49	4.4	49	98	0	414	30	33	8	27	1.87
46447176--46447224	22	2.2	22	100	0	98	24	36	16	22	1.94
46447127--46447273	71	2.1	71	98	0	285	28	34	10	25	1.90
46447078--46447321	120	2.0	120	94	0	425	28	34	10	27	1.89
46447198--46447321	49	2.5	49	92	0	194	27	34	10	27	1.89
46450263--46450307	20	2.2	20	96	0	81	20	28	31	20	1.97
46453411--46453591	46	3.9	46	80	9	224	20	21	30	27	1.98
46453413--46453584	93	1.8	93	96	0	317	20	22	30	27	1.98
46456506--46456584	15	5.4	15	77	10	83	10	17	13	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46456497--46456583	29	3.0	29	81	8	95	10	17	16	56	1.67
46458943--46459123	46	3.9	46	81	9	233	20	21	29	27	1.98
46458945--46459115	93	1.8	93	96	0	315	20	22	29	27	1.98
46460637--46460797	39	4.2	39	90	3	236	22	21	31	24	1.98
46460637--46460826	39	4.9	39	86	3	222	23	22	31	23	1.99
46460661--46460826	79	2.1	77	86	2	224	24	22	30	22	1.99
46464954--46465116	40	4.1	40	77	10	129	25	28	21	24	1.99
46466869--46467049	46	3.9	46	81	9	233	20	21	29	27	1.98
46466871--46467041	93	1.8	93	96	0	315	20	22	29	27	1.98
46469617--46469646	12	2.4	12	94	5	51	30	6	33	30	1.83
46469934--46470012	15	5.4	15	77	10	83	10	17	13	58	1.63
46469925--46470011	29	3.0	29	81	8	95	10	17	16	56	1.67
46472382--46472562	46	3.9	46	80	9	224	20	21	30	27	1.98
46472384--46472555	93	1.8	93	96	0	317	20	22	30	27	1.98
46475677--46475745	27	2.6	27	95	0	120	30	26	14	28	1.95
46483211--46483353	39	3.7	38	81	5	135	23	28	23	24	1.99
46483202--46483348	79	1.9	79	81	5	181	23	30	24	21	1.99
46483242--46483348	40	2.7	39	86	1	133	21	29	25	23	1.99
46486879--46486948	27	2.6	27	95	2	122	30	27	14	28	1.95
46488711--46488785	27	2.8	27	81	0	87	22	20	20	37	1.94
46490700--46490731	14	2.4	14	90	10	50	21	15	28	34	1.94
46490701--46491131	50	8.5	50	77	3	364	25	16	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46490748--46491131	101	3.8	99	76	4	338	26	17	26	30	1.97
46490744--46491134	151	2.6	151	88	0	566	25	17	26	30	1.97
46495522--46495590	33	2.1	33	91	0	111	30	21	14	33	1.93
46495566--46495981	48	8.7	47	75	4	269	26	28	18	26	1.98
46495566--46495991	96	4.4	96	82	2	455	26	28	17	26	1.98
46495614--46495981	144	2.6	144	80	1	380	26	29	18	26	1.98
46501700--46501760	24	2.6	23	73	19	63	34	1	37	26	1.66
46503165--46503275	27	4.2	26	84	10	125	14	24	23	37	1.92
46503165--46503275	53	2.1	54	84	5	145	14	24	23	37	1.92
46504323--46504356	10	3.3	10	84	8	50	29	8	8	52	1.62
46509520--46509587	23	2.9	23	86	4	100	35	2	36	25	1.71
46509520--46509589	24	3.0	24	89	2	106	35	2	37	24	1.70
46511004--46511115	27	4.2	26	80	7	116	16	23	22	37	1.94
46511004--46511115	54	2.1	54	83	3	136	16	23	22	37	1.94
46533281--46533397	46	2.5	46	84	4	137	24	30	15	29	1.96
46540590--46540760	47	3.7	47	76	10	163	22	31	17	28	1.97
46541061--46541092	13	2.6	12	90	9	55	53	15	0	31	1.43
46545348--46545511	40	4.1	40	78	6	170	25	21	27	25	2.00
46565761--46565927	43	3.9	41	81	3	154	26	14	25	33	1.95
46568984--46569096	54	2.1	54	94	0	199	23	28	30	17	1.97
46569363--46569402	21	2.0	21	90	5	64	10	40	27	22	1.86
46573599--46573750	51	3.0	51	94	0	250	30	23	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46581352--46581512	51	3.2	51	95	0	268	29	23	14	32	1.94
46586851--46587108	40	6.5	40	92	2	387	25	27	24	22	2.00
46593333--46593480	40	3.7	40	91	1	217	23	22	29	25	1.99
46598317--46598499	40	4.6	40	92	1	278	26	28	23	20	1.99
46604660--46604698	20	2.0	20	89	0	60	46	7	20	25	1.77
46606426--46606451	9	2.9	9	100	0	52	69	19	0	11	1.18
46612908--46613065	40	4.0	40	78	4	151	27	23	25	23	2.00
46612908--46613095	80	2.3	80	80	10	206	26	23	26	23	2.00
46614654--46614678	7	3.6	7	100	0	50	12	0	28	60	1.32
46615549--46615617	27	2.5	28	90	6	115	26	13	27	33	1.93
46622518--46622542	7	3.6	7	100	0	50	12	0	28	60	1.32
46623416--46623485	27	2.5	28	90	2	115	25	12	28	32	1.93
46630187--46630977	47	16.3	47	85	9	878	28	29	8	32	1.87
46630474--46630511	18	2.1	18	100	0	76	39	28	0	31	1.57
46630427--46630560	65	2.0	66	97	2	252	32	29	5	32	1.81
46630492--46630977	143	3.4	141	94	2	819	29	28	8	32	1.87
46635447--46635510	28	2.3	27	79	17	69	62	4	12	20	1.47
46637715--46637789	29	2.6	29	89	4	107	26	16	32	25	1.96
46645571--46645644	29	2.6	29	89	4	105	25	16	32	25	1.96
46652862--46653039	40	4.5	40	90	3	236	22	24	28	24	1.99
46660921--46661138	40	5.5	40	92	2	316	22	24	28	24	1.99
46663399--46663441	22	1.9	23	81	13	54	46	9	30	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46669030--46669247	40	5.5	40	90	2	298	22	24	27	25	2.00
46672812--46672871	30	2.0	30	90	0	93	38	8	25	28	1.84
46679575--46680044	129	3.6	128	78	10	345	35	18	18	27	1.95
46679670--46680046	129	2.9	128	81	8	379	35	18	18	27	1.95
46683059--46683324	44	6.2	44	82	6	321	26	27	15	30	1.96
46683059--46683324	127	2.1	129	86	6	369	26	27	15	30	1.96
46684304--46684333	2	15.0	2	100	0	60	50	0	0	50	1.00
46695808--46695833	13	2.0	13	100	0	52	15	30	0	53	1.42
46703638--46703993	132	2.7	131	84	2	410	34	19	19	26	1.95
46704941--46705001	30	2.0	30	87	6	88	36	8	26	29	1.85
46705647--46705879	49	4.7	51	83	4	289	25	17	27	29	1.98
46713112--46713167	15	3.7	15	88	7	87	12	16	10	60	1.58
46719627--46719675	17	2.8	18	74	22	50	24	18	22	34	1.96
46720495--46720661	40	4.2	40	79	6	169	25	21	27	25	1.99
46727617--46727665	17	2.8	18	74	22	50	24	18	22	34	1.96
46728486--46728652	40	4.2	40	79	6	169	25	21	27	25	1.99
46731714--46731865	40	3.8	40	80	8	166	21	26	24	26	1.99
46731714--46731865	80	1.9	80	85	5	209	21	26	24	26	1.99
46733944--46734209	49	5.6	47	73	12	188	27	19	29	22	1.98
46733889--46734208	47	6.8	46	73	11	186	27	20	28	23	1.99
46740373--46740490	41	3.1	41	60	28	98	32	17	28	21	1.96
46740341--46740504	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46751740--46751923	40	4.7	40	87	6	252	25	29	21	23	1.99
46751720--46751927	77	2.6	76	87	7	292	26	28	21	24	1.99
46759823--46760028	80	2.6	80	90	2	328	26	29	20	23	1.99
46759823--46760028	40	5.2	40	88	3	285	26	29	20	23	1.99
46762084--46762302	47	4.7	46	74	10	180	26	20	28	23	1.99
46762085--46762305	94	2.4	91	82	6	241	27	20	28	23	1.99
46765830--46765900	37	1.9	37	97	0	133	22	32	22	22	1.98
46766021--46766231	49	4.3	49	95	1	372	30	29	7	32	1.85
46768944--46768984	21	2.0	20	85	4	55	21	19	19	39	1.93
46770337--46770368	15	2.1	15	94	0	55	46	3	6	43	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345