genome.fa.s12.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  162  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45014781--45014904	61	2.0	61	100	0	248	20	20	31	27	1.98
45017861--45017940	15	5.4	15	77	7	83	10	18	13	57	1.64
45017852--45017939	30	3.0	30	80	11	92	10	18	15	55	1.68
45020981--45021198	40	5.5	40	91	2	307	24	27	24	22	2.00
45029078--45029295	40	5.5	40	92	2	316	24	28	24	22	1.99
45037403--45037562	29	5.5	29	82	4	180	25	31	16	26	1.97
45045462--45045621	29	5.5	29	82	4	180	25	31	16	26	1.97
45050117--45050155	20	2.0	20	84	0	51	43	12	7	35	1.72
45057390--45057430	10	4.2	10	84	6	57	41	0	9	48	1.36
45057367--45057428	19	3.3	19	78	14	74	40	1	12	45	1.52
45058184--45058216	12	3.0	11	91	8	50	36	0	30	33	1.58
45061220--45061494	48	5.7	48	82	5	306	28	30	18	23	1.97
45068776--45069089	48	6.6	48	89	2	420	29	31	16	22	1.96
45072093--45072204	42	2.7	42	73	2	109	30	24	14	31	1.94
45072706--45072757	26	2.0	25	85	14	70	30	26	3	38	1.74
45081600--45081655	15	3.7	15	77	17	71	62	12	14	10	1.55
45084651--45084842	49	3.9	49	79	7	201	28	28	17	25	1.98
45084704--45084779	24	3.2	23	66	23	57	30	27	15	26	1.96
45084662--45084846	99	1.9	98	87	3	273	29	28	16	25	1.97
45090608--45090760	40	3.8	40	92	0	261	24	20	28	27	1.99
45092820--45092866	21	2.2	21	96	0	85	19	25	42	12	1.86
45094002--45094228	47	4.9	47	79	9	193	23	29	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45094055--45094171	46	2.5	46	83	6	139	24	29	17	28	1.97
45094008--45094265	140	1.8	140	85	4	360	24	28	17	29	1.97
45095751--45095819	20	3.5	20	78	9	70	39	17	11	31	1.85
45095963--45096019	23	2.4	23	82	8	71	29	22	22	24	1.99
45095981--45096043	23	2.7	24	82	7	67	38	22	20	19	1.94
45099418--45099451	16	2.1	16	89	10	52	29	17	0	52	1.45
45104671--45104984	23	13.7	23	82	4	348	23	21	24	30	1.98
45111082--45111345	23	11.5	23	82	4	318	23	19	26	31	1.98
45111071--45111347	46	6.0	46	88	2	387	22	19	25	31	1.98
45111071--45111329	69	3.8	69	86	6	362	22	20	25	30	1.98
45118483--45118575	43	2.2	43	86	3	125	24	32	24	18	1.97
45119227--45119297	24	3.0	24	95	0	124	35	1	38	25	1.65
45119227--45119320	48	1.9	48	81	10	111	35	4	37	23	1.75
45120669--45120780	27	4.1	27	74	7	93	16	20	22	40	1.91
45120670--45120776	54	2.0	54	83	3	135	17	19	21	41	1.91
45130759--45130838	24	3.3	24	76	1	88	22	25	23	28	1.99
45144774--45144837	16	4.0	16	81	0	83	35	7	31	25	1.84
45145025--45145148	58	2.1	58	89	2	187	52	3	0	44	1.17
45148537--45148730	39	4.9	39	89	0	271	23	32	21	22	1.98
45152154--45152187	18	1.9	18	88	5	52	20	5	26	47	1.73
45154840--45154880	21	2.0	21	90	0	64	19	29	21	29	1.98
45171059--45171091	17	1.9	17	93	0	57	57	12	0	30	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45181538--45181585	12	3.8	12	79	15	60	14	0	12	72	1.11
45183406--45183493	30	2.9	30	88	3	115	19	34	26	20	1.96
45185754--45185811	26	2.2	27	85	11	77	41	10	13	34	1.79
45197453--45197515	24	2.6	24	97	0	117	36	25	17	20	1.94
45201927--45202173	39	6.3	39	88	1	318	31	29	21	18	1.97
45202514--45202733	110	2.0	110	95	0	395	24	20	8	46	1.77
45219888--45220143	77	3.3	79	82	8	301	30	29	21	18	1.97
45219888--45220143	39	6.5	39	87	5	297	30	29	21	18	1.97
45220478--45220697	110	2.0	110	95	0	395	24	20	8	46	1.77
45234232--45234286	24	2.3	24	96	0	101	18	12	9	60	1.58
45234352--45234400	3	16.3	3	100	0	98	34	0	0	65	0.93
45238726--45238812	37	2.3	36	94	5	147	26	33	19	20	1.97
45238881--45239094	49	4.4	49	94	0	338	29	28	9	32	1.88
45242543--45242725	24	7.6	24	94	0	285	20	17	25	36	1.94
45242543--45242747	48	4.3	49	86	4	222	22	17	24	35	1.95
45242543--45242747	72	2.8	72	81	5	245	22	17	24	35	1.95
45244910--45245093	40	4.6	40	95	0	316	25	28	21	23	1.99
45244942--45245118	80	2.2	80	91	5	279	28	28	20	23	1.99
45245022--45245210	40	4.7	40	81	5	150	27	28	20	23	1.99
45244910--45245207	120	2.5	119	81	5	318	26	28	20	24	1.99
45247068--45247154	37	2.3	36	94	5	147	26	33	19	20	1.97
45247223--45247484	49	5.4	49	93	0	418	30	29	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45255268--45255320	25	2.1	25	96	0	97	43	11	18	26	1.84
45270818--45270869	25	2.1	25	85	3	70	25	21	21	32	1.98
45271074--45271403	27	12.2	27	85	1	394	25	19	18	36	1.94
45271388--45271455	27	2.5	26	90	4	100	30	8	20	39	1.83
45271157--45271449	81	3.6	79	81	8	295	27	17	17	37	1.92
45276694--45276743	11	4.4	11	80	9	55	36	0	2	62	1.07
45278171--45278573	200	2.0	200	97	0	761	35	8	20	35	1.83
45278697--45278820	45	2.8	45	85	4	162	38	15	22	23	1.92
45278792--45278949	46	3.5	46	92	3	248	43	13	23	19	1.86
45278921--45278976	29	1.9	29	88	0	85	48	7	23	21	1.74
45285750--45285782	12	2.6	13	85	9	50	9	45	0	45	1.35
45286847--45286910	27	2.3	28	83	5	85	34	25	9	31	1.87
45287016--45287116	28	3.6	27	81	5	112	19	23	22	33	1.97
45287016--45287116	27	3.6	28	81	4	114	19	23	22	33	1.97
45287016--45287130	55	2.1	56	82	8	137	18	22	22	36	1.95
45288173--45288206	10	3.3	10	84	8	50	29	8	8	52	1.62
45293517--45293549	12	2.6	13	85	9	50	9	45	0	45	1.35
45294338--45294369	8	4.0	8	91	0	55	46	25	25	3	1.67
45294616--45294679	27	2.3	28	86	5	94	32	26	9	31	1.88
45294785--45294885	28	3.6	27	82	5	121	19	24	22	32	1.97
45294785--45294885	27	3.6	28	82	4	123	19	24	22	32	1.97
45294785--45294899	55	2.1	56	83	8	146	18	23	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45300711--45300740	14	2.1	15	93	6	53	66	3	0	30	1.07
45301035--45301059	13	1.9	13	100	0	50	48	20	24	8	1.76
45304669--45304783	29	4.0	29	83	6	137	28	29	13	27	1.95
45309111--45309219	58	1.9	58	90	1	175	28	28	14	28	1.95
45309114--45309221	29	3.8	29	81	6	121	28	27	14	28	1.96
45316651--45316680	16	1.9	16	93	6	53	50	6	0	43	1.28
45318217--45318251	13	2.7	13	86	0	52	28	8	22	40	1.84
45323532--45323605	30	2.5	30	88	0	121	37	12	17	32	1.87
45324400--45324542	45	3.2	45	65	23	127	20	12	17	48	1.79
45324352--45324543	91	2.1	91	99	0	375	21	11	18	47	1.80
45324384--45324525	46	3.1	46	65	23	127	20	11	19	48	1.80
45331563--45331621	31	1.9	31	100	0	118	25	25	20	28	1.99
45331517--45331608	46	2.0	46	86	0	130	26	25	22	26	2.00
45331601--45331827	50	4.5	50	92	0	355	26	22	15	35	1.94
45336388--45336454	31	2.2	31	83	0	80	28	25	19	26	1.99
45336458--45336516	31	1.9	31	92	0	100	27	23	18	30	1.98
45336496--45336772	50	5.5	50	94	0	455	26	22	15	36	1.93
45337024--45337064	21	1.9	22	85	5	57	41	14	0	43	1.45
45339441--45339752	47	6.7	46	75	13	180	27	17	29	24	1.98
45339438--45339610	46	3.7	45	81	10	190	27	18	28	24	1.98
45339622--45339755	47	2.8	49	85	7	184	26	18	32	22	1.97
45341667--45341977	154	2.0	154	95	0	559	32	20	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45342753--45342786	17	2.1	17	88	5	52	38	2	0	58	1.13
45342862--45342919	27	2.1	27	83	0	71	22	24	25	27	2.00
45346544--45346660	33	3.6	32	80	7	121	25	13	44	16	1.84
45348696--45348727	16	2.1	16	94	5	57	56	6	0	37	1.25
45348776--45349230	115	4.0	113	91	4	699	52	15	0	31	1.49
45349084--45349299	100	2.2	102	78	14	236	51	15	1	31	1.52
45349483--45349521	3	13.0	3	100	0	78	0	33	0	66	0.92
45350279--45350331	15	3.4	16	76	19	58	60	0	1	37	1.08
45355689--45355882	50	3.9	49	81	6	212	27	28	19	24	1.98
45355700--45355886	101	1.9	99	86	4	268	27	29	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345