Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  34  of  345  ( 41379 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10362540--10362699
51
3.1
51
93
1
266
33
4
24
38
1.75
10362540--10362699
77
2.1
77
94
2
277
33
4
24
38
1.75
10364182--10364234
26
2.0
26
85
7
72
37
22
15
24
1.92
10364482--10364767
136
2.1
137
96
0
529
24
18
24
31
1.98
10367891--10367985
35
2.7
36
79
6
115
47
10
1
41
1.45
10368075--10368144
15
4.2
16
74
18
54
1
34
0
64
1.03
10368075--10368115
18
2.3
18
88
12
59
0
36
0
63
0.95
10368075--10368128
19
2.9
19
84
13
60
0
37
0
62
0.95
10368262--10368306
18
2.5
18
88
0
72
4
11
6
77
1.09
10368767--10368822
26
2.1
27
87
6
80
35
0
0
64
0.94
10369730--10369762
16
2.0
17
88
5
50
45
0
0
54
0.99
10369712--10369773
21
3.0
20
75
11
54
56
0
0
43
0.99
10371432--10371507
38
2.0
38
100
0
152
44
7
18
28
1.78
10379101--10379159
25
2.3
26
80
11
70
38
0
0
61
0.96
10384368--10384400
2
16.5
2
93
0
57
51
0
45
3
1.16
10389946--10390395
46
10.0
46
91
4
702
22
24
15
38
1.92
10393445--10393497
3
17.3
3
84
3
70
32
5
0
62
1.19
10393406--10393491
16
5.4
16
73
20
72
27
9
0
62
1.25
10393871--10393926
14
3.8
16
72
13
57
35
7
1
55
1.38
10393897--10393941
21
2.2
21
88
7
67
33
6
0
60
1.23
10408139--10408194
3
18.3
3
85
3
76
32
5
0
62
1.18
10408100--10408188
16
5.4
16
75
20
76
28
8
0
62
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10408565--10408620
14
3.8
16
72
13
57
35
7
1
55
1.38
10408591--10408635
21
2.2
21
88
7
67
33
6
0
60
1.23
10409750--10409798
19
2.6
18
77
6
53
67
4
2
26
1.19
10410414--10410484
31
2.3
31
82
2
90
50
11
15
22
1.75
10410988--10411036
14
3.2
16
75
13
59
42
6
10
40
1.63
10414068--10414171
35
3.0
34
90
5
165
16
48
12
23
1.80
10414571--10414648
33
2.4
32
83
10
104
64
17
6
11
1.47
10415459--10415513
2
29.0
2
78
10
53
40
0
7
52
1.29
10427191--10427365
46
3.8
46
80
10
214
20
21
29
29
1.98
10427187--10427357
93
1.8
92
93
1
297
20
21
29
28
1.98
10430493--10431081
70
8.2
70
92
5
971
32
15
19
31
1.94
10430687--10431059
77
5.0
77
92
4
603
31
15
19
32
1.93
10430493--10431081
217
2.7
217
96
2
1084
32
15
19
31
1.94
10430493--10431081
147
4.1
140
92
4
971
32
15
19
31
1.94
10430514--10431182
147
4.6
142
86
10
684
30
16
20
31
1.95
10431132--10431286
54
3.0
52
81
11
194
29
16
18
34
1.93
10431993--10432098
35
3.0
35
95
0
194
16
49
12
22
1.78
10432499--10432576
33
2.4
32
83
10
104
64
17
6
11
1.47
10433406--10433457
22
2.3
23
86
6
88
40
0
5
53
1.25
10433399--10433457
2
31.0
2
80
10
61
40
0
6
52
1.28
10436068--10436099
2
16.5
2
93
6
57
50
0
0
50
1.00
10437892--10437930
18
2.1
19
90
4
62
46
2
0
51
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10439229--10439269
20
2.0
20
90
9
66
9
4
17
68
1.35
10442297--10442327
15
2.1
15
93
0
53
16
38
16
29
1.90
10446861--10446937
22
3.4
22
80
8
75
38
14
27
19
1.90
10447064--10447110
2
24.0
2
83
12
62
48
4
0
46
1.21
10447872--10447909
5
7.8
5
83
16
53
57
0
0
42
0.98
10447871--10447909
10
4.1
9
90
9
60
56
0
0
43
0.99
10450066--10450109
15
2.9
15
83
6
54
52
11
2
34
1.50
10450068--10450111
21
2.1
21
83
8
54
52
11
2
34
1.50
10450447--10450480
17
2.0
17
88
0
50
55
5
0
38
1.24
10452313--10452498
102
1.8
102
89
0
291
37
17
18
25
1.93
10452407--10452562
73
2.1
75
85
4
210
33
21
17
26
1.96
10452645--10452679
14
2.5
14
90
0
52
62
2
11
22
1.41
10452483--10453352
176
4.9
176
75
16
745
36
18
17
27
1.93
10452483--10452841
89
4.1
87
87
4
479
38
18
16
26
1.92
10452415--10453011
176
3.5
162
81
10
664
37
18
17
27
1.93
10452260--10453352
338
3.1
348
81
11
1127
36
18
17
27
1.93
10452749--10452915
75
2.2
75
85
6
214
37
16
16
29
1.91
10452823--10453196
102
3.9
97
76
14
312
37
17
16
28
1.91
10452661--10453011
170
2.1
162
87
6
490
38
17
17
27
1.91
10453131--10453273
77
1.9
74
91
5
234
32
23
14
28
1.94
10453037--10453359
166
1.9
166
87
8
476
34
20
16
28
1.94
10465227--10465256
16
1.9
15
93
6
51
46
6
0
46
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10465433--10465464
2
16.0
2
100
0
64
50
0
0
50
1.00
10465962--10466009
21
2.3
20
80
13
53
52
12
2
33
1.51
10465960--10466003
15
2.9
15
83
6
54
52
11
2
34
1.50
10466338--10466371
17
2.0
17
88
0
50
55
5
0
38
1.24
10466916--10466958
19
2.3
19
84
4
52
69
0
30
0
0.88
10467350--10467733
144
2.6
145
92
3
630
32
17
25
24
1.97
10467599--10468014
177
2.4
175
83
5
532
30
17
24
27
1.97
10468022--10468602
176
3.3
176
84
3
744
29
17
24
28
1.98
10467729--10468313
265
2.2
266
79
6
611
29
17
23
28
1.97
10468264--10468362
43
2.2
45
85
3
139
29
15
24
31
1.95
10470198--10470260
31
2.1
31
81
3
74
33
7
4
53
1.51
10486164--10486216
21
2.5
21
81
0
61
39
7
20
32
1.81
10488139--10488186
21
2.4
21
86
10
66
45
10
8
35
1.68
10488961--10488990
13
2.3
13
94
0
51
36
13
0
50
1.42
10494475--10494513
16
2.4
16
88
12
62
64
0
12
23
1.28
10496377--10496426
22
2.2
22
85
3
64
54
4
4
38
1.38
10496567--10496619
24
2.2
24
86
6
72
67
0
3
28
1.07
10509108--10509149
19
2.2
19
86
4
57
59
0
9
30
1.29
10516804--10516856
25
2.1
26
82
10
65
47
1
0
50
1.12
10517144--10517205
28
2.2
29
80
8
74
48
1
0
50
1.10
10517245--10517280
15
2.5
14
86
8
54
63
8
0
27
1.23
10521412--10521542
67
1.9
69
85
7
185
35
6
21
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10522353--10522391
12
3.2
12
81
0
51
2
38
0
58
1.12
10540877--10540918
18
2.5
17
85
11
59
54
0
2
42
1.13
10541637--10541686
13
3.8
13
76
10
57
44
0
2
54
1.11
10541632--10541702
24
3.1
22
78
11
79
45
0
1
53
1.09
10541697--10541754
22
2.6
23
84
13
77
36
1
1
60
1.17
10541762--10541828
31
2.3
28
85
10
89
34
0
5
59
1.22
10542414--10542442
2
14.5
2
100
0
58
48
0
0
51
1.00
10542340--10542838
218
2.2
223
95
2
882
39
9
6
43
1.64
10543358--10543390
14
2.3
15
94
5
59
57
0
0
42
0.98
10543365--10543489
31
3.9
30
72
18
92
60
2
0
36
1.15
10543448--10543505
22
2.6
23
84
13
77
60
1
1
36
1.17
10543493--10543556
22
2.8
22
88
4
83
51
1
0
46
1.10
10543494--10543572
24
3.3
23
79
10
88
54
2
0
43
1.14
10543500--10543596
46
2.1
46
80
3
106
60
1
0
38
1.03
10543582--10543647
27
2.4
27
75
14
64
72
4
9
13
1.24
10544101--10544159
24
2.5
22
76
12
55
55
1
0
42
1.09
10544364--10544406
19
2.2
20
91
4
70
46
0
6
46
1.30
10544364--10544423
19
3.3
19
84
9
63
45
1
5
48
1.34
10549894--10549920
2
13.5
2
100
0
54
51
0
0
48
1.00
10562987--10563136
76
2.0
76
100
0
300
26
12
16
44
1.83
10571887--10571928
21
2.0
20
86
4
57
61
7
2
28
1.35
10578857--10578986
44
3.0
44
77
1
136
25
23
22
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10579186--10579304
57
2.1
57
93
0
202
21
25
20
33
1.97
10579243--10579374
44
3.0
43
73
11
133
20
22
24
32
1.98
10579113--10579376
145
1.8
145
94
1
467
18
23
23
33
1.97
10579259--10579395
44
3.1
41
73
14
98
16
21
27
34
1.95
10588395--10588432
19
2.1
19
90
9
62
76
0
23
0
0.79
10597033--10597068
10
3.5
10
88
7
54
58
2
8
30
1.42
10605108--10605158
18
2.8
18
77
16
52
68
0
5
25
1.12
10607240--10607280
20
2.0
20
90
0
64
29
21
14
34
1.93
10607245--10607297
20
2.7
20
85
5
63
26
16
18
37
1.93
10607251--10607367
42
2.8
42
80
5
114
22
22
15
40
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345