genome.fa.s12.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  175  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49315496--49315604	40	2.7	40	75	8	105	24	25	25	23	2.00
49318285--49318334	23	2.3	23	83	13	61	42	2	18	38	1.61
49329456--49329595	41	3.4	39	78	11	122	26	16	26	30	1.97
49329540--49329675	70	1.9	70	88	2	202	31	15	22	30	1.95
49332385--49332480	7	13.0	7	96	3	147	45	40	0	13	1.43
49343650--49343748	26	3.6	27	81	8	103	32	22	24	21	1.98
49352772--49352842	29	2.4	29	100	0	142	29	15	28	26	1.96
49352772--49352902	29	4.5	29	84	3	124	26	16	31	25	1.96
49355148--49355248	28	3.5	28	86	6	114	29	13	26	29	1.94
49355177--49355248	29	2.5	28	91	6	110	30	13	26	29	1.94
49358365--49358515	40	3.8	40	77	6	146	27	23	26	22	2.00
49358402--49358531	40	3.2	40	77	4	138	24	23	27	23	2.00
49370874--49371159	40	7.2	40	85	3	344	25	26	23	24	2.00
49373904--49374030	44	2.9	43	86	3	155	35	26	14	22	1.94
49380259--49380453	68	2.8	68	91	3	275	22	27	16	33	1.96
49380296--49380453	68	2.3	68	97	0	298	24	27	15	32	1.95
49380296--49380521	68	3.3	68	87	4	235	23	26	17	32	1.96
49389219--49389392	89	2.0	89	80	4	199	31	15	21	31	1.95
49393471--49393596	46	2.7	46	77	9	130	29	19	27	23	1.98
49396071--49396272	27	7.5	26	80	9	210	35	20	25	18	1.95
49396089--49396282	54	3.6	54	88	3	277	35	22	25	17	1.95
49398877--49399040	39	4.2	39	87	0	229	32	20	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49401013--49401120	26	4.2	26	90	2	164	36	23	8	32	1.84
49406351--49406560	27	7.8	27	80	12	218	35	21	23	19	1.96
49406369--49406560	54	3.6	54	93	1	323	35	22	23	18	1.96
49406369--49406563	81	2.4	80	84	8	243	35	22	23	18	1.96
49408162--49408269	26	4.2	26	87	7	157	37	22	6	33	1.80
49408162--49408269	52	2.1	52	91	3	173	37	22	6	33	1.80
49410463--49410513	26	1.9	27	84	4	68	39	15	13	31	1.87
49410832--49410927	34	2.9	33	78	10	106	23	20	27	28	1.99
49411985--49412056	34	2.1	35	82	7	85	43	11	25	20	1.85
49417677--49417861	79	2.3	82	85	7	256	24	21	27	27	1.99
49417677--49417861	40	4.7	40	89	5	252	24	21	27	27	1.99
49417677--49417894	79	2.7	79	79	14	252	25	21	27	26	1.99
49417677--49417894	119	1.8	119	82	7	282	25	21	27	26	1.99
49425697--49425842	40	3.7	40	84	7	163	23	21	27	27	1.99
49425697--49425865	80	2.1	80	81	7	193	25	20	26	27	1.99
49430072--49430110	18	2.2	18	86	9	53	64	15	0	20	1.30
49430516--49430677	32	5.1	32	88	0	220	37	20	20	20	1.94
49437966--49438076	27	4.1	27	85	5	127	36	19	25	18	1.95
49437966--49438076	54	2.1	53	84	1	141	36	19	25	18	1.95
49439267--49439299	16	2.1	16	94	0	57	54	6	33	6	1.50
49443129--49443228	29	3.3	29	66	22	78	29	22	17	32	1.96
49443097--49443238	63	2.3	63	94	0	257	29	20	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49443080--49443199	33	3.7	34	65	19	85	28	21	20	30	1.98
49453782--49453894	43	2.7	42	80	4	129	32	25	18	23	1.97
49460144--49460215	34	2.1	35	82	7	85	20	25	11	43	1.85
49462793--49463009	40	5.4	40	86	3	253	23	23	27	25	2.00
49466615--49466745	65	2.0	65	92	0	217	42	18	14	24	1.87
49469091--49469429	123	2.8	123	95	0	597	30	10	25	33	1.90
49469398--49469641	40	6.1	40	87	1	292	25	21	26	27	1.99
49479167--49479297	30	4.5	30	86	8	171	32	13	25	28	1.94
49479167--49479297	58	2.2	58	86	4	174	32	13	25	28	1.94
49486941--49487071	30	4.5	30	86	8	171	32	13	25	28	1.94
49486941--49487071	58	2.2	58	86	4	174	32	13	25	28	1.94
49489871--49490209	123	2.8	123	95	0	597	30	10	25	33	1.90
49490178--49490400	40	5.6	40	89	2	295	26	21	25	26	1.99
49494041--49494112	34	2.1	35	84	7	94	20	26	11	41	1.86
49495538--49495591	26	2.0	26	82	3	63	27	16	20	35	1.94
49504895--49505045	77	1.9	79	94	2	270	23	21	31	23	1.98
49504884--49505045	39	4.2	39	91	2	263	22	20	32	24	1.98
49504884--49505076	39	4.9	39	89	1	253	22	21	31	23	1.98
49504901--49505114	79	2.7	77	84	5	223	23	22	30	22	1.99
49510079--49510241	39	4.2	39	93	0	272	22	20	32	24	1.98
49510079--49510272	39	4.9	39	90	0	262	22	21	31	23	1.98
49510096--49510310	78	2.7	78	85	5	227	23	22	31	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49514427--49514614	40	4.7	40	83	0	205	26	22	25	25	2.00
49514461--49514630	40	4.2	40	84	1	216	24	21	27	26	1.99
49517708--49517871	71	2.3	71	97	0	310	34	18	28	18	1.95
49519477--49519533	28	2.0	28	96	0	105	33	17	3	45	1.65
49519995--49520108	51	2.2	51	93	0	192	29	23	13	33	1.93
49520087--49520153	7	9.6	7	86	0	80	14	29	13	41	1.85
49520093--49520147	21	2.6	21	91	0	92	10	29	16	43	1.82
49520087--49520153	28	2.4	28	97	0	125	14	29	13	41	1.85
49527680--49527782	51	2.0	51	94	0	179	33	21	11	33	1.89
49527728--49527829	37	2.5	42	71	23	108	30	22	16	30	1.96
49527735--49527819	37	2.3	37	87	0	116	31	22	17	28	1.97
49532281--49532413	59	2.2	60	89	1	196	35	14	24	26	1.93
49532311--49532413	29	3.5	29	94	2	179	37	14	23	24	1.92
49534795--49534876	35	2.4	34	87	2	119	20	50	8	20	1.74
49535241--49535284	12	3.6	12	96	3	79	79	6	0	13	0.92
49535241--49535285	13	3.5	13	93	6	83	80	6	0	13	0.91
49535380--49535414	11	3.2	11	88	11	54	0	54	0	45	0.99
49535893--49536119	3	73.0	3	74	14	135	31	3	5	59	1.36
49536157--49536188	14	2.1	16	88	11	50	28	6	0	65	1.16
49543157--49543288	59	2.3	58	97	1	246	37	14	24	24	1.92
49543127--49543288	88	1.8	89	90	1	263	35	14	24	25	1.93
49543157--49543288	29	4.5	29	97	1	246	37	14	24	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49548269--49548427	29	5.4	30	88	8	220	33	13	25	27	1.94
49548269--49548427	59	2.7	57	89	4	221	33	13	25	27	1.94
49549842--49550024	78	2.3	77	86	2	231	22	31	21	24	1.99
49549873--49550025	39	3.9	39	91	0	234	23	32	20	23	1.98
49557666--49557817	39	3.9	39	89	1	225	25	30	21	23	1.98
49567455--49567585	30	4.5	30	86	8	171	28	25	13	32	1.94
49567454--49567585	58	2.3	58	85	4	176	28	26	13	31	1.94
49575231--49575361	30	4.5	30	86	8	171	28	25	13	32	1.94
49575230--49575361	58	2.3	58	85	4	176	28	26	13	31	1.94
49576318--49576467	40	3.8	39	80	7	151	24	25	24	26	2.00
49576318--49576467	80	1.9	80	83	2	194	24	25	24	26	2.00
49577872--49577962	30	3.2	29	87	6	96	28	21	14	35	1.93
49577884--49577964	30	2.7	30	98	1	155	27	23	13	35	1.92
49583309--49583436	40	3.2	39	75	10	123	22	28	24	24	1.99
49583325--49583476	81	1.9	81	81	10	186	22	26	23	26	2.00
49591291--49591420	40	3.3	39	76	8	136	23	27	23	24	2.00
49591307--49591458	40	3.8	40	78	6	148	22	26	23	27	1.99
49591307--49591456	80	1.9	80	83	8	198	22	26	24	27	1.99
49593870--49593913	19	2.4	19	85	7	56	50	0	9	40	1.34
49596281--49596336	11	5.5	11	71	16	57	35	12	19	32	1.89
49596278--49596336	20	3.0	20	97	0	109	33	11	20	33	1.89
49596386--49596553	24	7.0	24	88	2	248	30	20	20	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49597705--49597817	26	4.5	25	83	4	122	29	21	20	29	1.98
49597747--49597818	26	2.8	26	97	0	135	27	20	22	29	1.99
49600371--49600509	44	3.2	43	81	11	160	26	18	23	31	1.97
49601712--49601776	15	4.4	15	78	16	73	63	13	13	9	1.53
49601712--49601780	30	2.3	31	83	14	92	60	17	13	8	1.56
49604792--49605023	49	4.7	49	86	3	302	28	27	18	25	1.98
49604779--49605024	99	2.5	101	85	2	327	28	27	18	26	1.98
49613571--49613743	46	3.7	46	77	13	192	23	21	26	28	1.99
49613568--49613738	93	1.8	93	93	0	297	22	21	27	28	1.99
49616604--49616628	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345