genome.fa.s12.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  122  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32560242--32560356	58	2.0	59	92	1	196	28	29	26	14	1.95
32560301--32560391	41	2.2	40	86	1	119	27	25	25	21	2.00
32560203--32560391	99	1.9	99	89	2	290	29	25	25	19	1.99
32560557--32560641	21	3.9	21	73	11	80	28	2	24	44	1.66
32560564--32560657	46	2.0	46	91	0	152	29	3	24	42	1.70
32560684--32560804	7	17.1	7	70	10	68	21	0	40	38	1.54
32561940--32562029	46	2.0	46	84	8	121	37	2	4	55	1.32
32561967--32562029	23	2.7	23	77	18	85	38	0	6	55	1.25
32566060--32566092	12	2.8	12	100	0	66	48	6	9	36	1.60
32566714--32566746	15	2.1	16	88	11	50	24	0	0	75	0.80
32571020--32571079	29	2.1	29	100	0	120	46	16	6	30	1.73
32574853--32574894	21	2.0	21	85	4	57	35	2	19	42	1.64
32576708--32576736	2	14.5	2	100	0	58	48	0	0	51	1.00
32580179--32580227	20	2.4	21	80	10	57	38	16	4	40	1.67
32580288--32580355	34	2.1	33	81	10	77	60	2	4	32	1.32
32591583--32591621	16	2.4	17	86	4	53	0	25	0	74	0.82
32594006--32594052	3	17.0	3	79	16	57	61	0	0	38	0.96
32594006--32594061	8	7.0	8	91	4	87	62	1	0	35	1.06
32594046--32594092	20	2.2	20	85	7	58	72	4	4	19	1.18
32600757--32600811	24	2.3	24	90	0	92	30	7	1	60	1.35
32601325--32601385	25	2.4	25	77	0	68	27	3	1	67	1.16
32616203--32616347	37	3.9	37	93	0	245	23	33	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32616392--32616859	48	9.7	48	90	1	738	31	25	7	35	1.83
32616392--32616859	98	4.8	96	92	1	738	31	25	7	35	1.83
32616392--32616859	146	3.2	144	93	1	810	31	25	7	35	1.83
32616781--32617069	47	6.1	47	89	2	366	28	28	10	32	1.90
32616942--32617070	25	5.4	25	64	17	85	30	27	10	32	1.89
32621043--32621076	15	2.3	15	89	0	50	70	8	0	20	1.13
32622199--32622307	45	2.2	46	82	12	121	29	15	24	30	1.96
32622240--32622327	46	1.9	46	86	4	124	25	17	28	29	1.97
32623426--32623455	15	2.0	15	100	0	60	40	33	6	20	1.78
32623447--32623483	17	2.2	17	100	0	74	51	27	0	21	1.48
32625425--32625473	25	1.9	26	87	4	73	40	8	10	40	1.69
32625564--32625651	21	4.4	21	65	21	62	43	6	1	48	1.37
32625580--32625622	17	2.7	16	79	10	52	44	2	0	53	1.13
32625641--32625712	17	4.5	16	85	13	78	54	0	1	44	1.08
32625639--32625730	6	15.5	6	67	22	52	53	1	1	44	1.15
32627327--32627356	15	2.0	15	93	0	51	73	10	6	10	1.25
32634396--32634452	25	2.2	25	78	9	62	66	3	7	22	1.31
32634465--32634525	25	2.3	26	80	8	70	72	6	4	16	1.24
32637685--32637768	26	3.2	25	91	6	132	38	23	4	33	1.76
32644741--32644848	44	2.4	44	86	6	137	28	23	14	33	1.94
32648659--32648724	29	2.3	29	86	5	89	27	13	31	27	1.94
32661786--32661885	28	3.5	28	86	6	112	29	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32665736--32665866	30	4.5	30	86	8	171	32	13	25	28	1.94
32665736--32665866	58	2.2	58	86	4	174	32	13	25	28	1.94
32673670--32673800	30	4.5	30	86	8	171	32	13	25	28	1.94
32673670--32673800	58	2.2	58	86	4	174	32	13	25	28	1.94
32681202--32681298	48	2.0	48	95	0	176	38	6	20	35	1.78
32694689--32694732	22	2.0	22	82	8	54	36	9	18	36	1.82
32697623--32697654	15	2.1	16	88	11	50	65	0	0	34	0.93
32697833--32697873	13	2.9	13	86	13	55	43	0	0	56	0.99
32697833--32697873	16	2.9	14	89	10	57	43	0	0	56	0.99
32697836--32697882	14	3.3	14	83	13	60	46	0	0	53	1.00
32698738--32698768	2	15.5	2	93	0	53	48	0	0	51	1.00
32699713--32699833	60	2.0	60	93	0	206	34	17	17	30	1.93
32701003--32701042	19	2.2	18	90	4	62	42	12	2	42	1.56
32705593--32705640	19	2.6	19	90	3	71	52	12	0	35	1.40
32721286--32721345	32	1.9	30	87	12	86	56	1	0	41	1.09
32722187--32722222	3	12.0	3	100	0	72	66	0	0	33	0.92
32725561--32725606	22	2.0	23	83	4	58	56	17	8	17	1.65
32730057--32730155	46	2.2	46	98	0	189	37	8	20	34	1.82
32732781--32732895	40	2.9	40	76	2	97	36	26	13	23	1.91
32734467--32734515	13	3.8	13	80	0	62	48	2	8	40	1.44
32734464--32734515	26	2.0	26	100	0	104	50	3	7	38	1.50
32734851--32734908	31	1.9	29	82	6	71	36	3	5	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32741510--32741558	22	2.2	22	85	7	64	69	0	0	30	0.89
32741512--32741553	19	2.3	18	88	12	59	71	0	0	28	0.86
32744282--32744665	184	2.1	184	88	2	565	36	10	10	42	1.73
32747414--32747444	14	2.3	14	94	5	55	0	9	0	90	0.46
32747547--32747608	30	2.1	30	84	6	81	46	6	1	45	1.38
32752439--32752506	27	2.5	28	85	2	93	33	25	13	27	1.93
32759731--32759800	27	2.5	28	86	2	97	32	25	14	27	1.94
32759808--32759914	42	2.5	42	95	0	187	23	33	14	28	1.93
32767064--32767133	27	2.5	28	83	2	88	34	25	12	27	1.92
32767141--32767247	42	2.5	42	95	0	187	23	33	14	28	1.93
32770918--32771020	42	2.5	42	83	3	127	16	20	18	44	1.87
32770954--32771038	42	2.0	42	88	0	125	16	24	18	40	1.91
32773063--32773154	40	2.3	40	96	0	166	33	17	21	27	1.96
32780544--32780664	40	2.9	39	73	17	102	30	12	26	30	1.93
32789768--32789826	21	2.8	21	76	7	66	54	5	0	40	1.23
32791416--32791464	25	2.0	25	91	0	80	44	14	14	26	1.83
32792485--32792570	21	4.0	22	79	10	88	37	25	22	15	1.93
32792753--32792847	38	2.5	38	79	5	95	28	29	21	21	1.98
32797063--32797153	37	2.4	37	89	8	148	25	31	19	23	1.98
32797224--32797376	49	3.1	49	97	0	279	30	26	9	33	1.87
32804416--32804820	46	8.8	46	92	1	578	21	24	14	39	1.90
32809657--32809753	40	2.4	40	82	0	113	23	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32809738--32809849	28	4.0	28	83	0	134	28	12	28	30	1.93
32810517--32810554	19	2.0	19	85	10	51	28	0	2	68	1.03
32810530--32810554	11	2.3	11	100	0	50	28	0	0	72	0.86
32817137--32817318	78	2.3	81	86	6	257	25	27	22	24	2.00
32817135--32817318	40	4.7	40	86	8	252	25	27	22	24	2.00
32819255--32819482	46	5.0	46	92	1	323	21	23	15	39	1.92
32821400--32821446	21	2.2	21	85	7	60	2	21	2	74	1.03
32821407--32821447	20	2.0	21	90	4	66	0	24	0	75	0.80
32826107--32826199	40	2.3	40	85	3	116	22	18	26	32	1.97
32827089--32827117	15	1.9	15	100	0	58	13	20	31	34	1.92
32829087--32829133	22	2.1	22	88	0	67	46	8	6	38	1.60
32834013--32834037	9	2.8	9	100	0	50	8	0	0	92	0.40
32844891--32844915	13	1.9	13	100	0	50	28	0	0	72	0.86
32844976--32845024	25	2.0	25	84	11	66	40	2	6	51	1.38
32855202--32855284	27	3.1	27	98	0	157	44	10	9	34	1.72
32856634--32856743	56	2.0	56	92	0	184	43	14	8	33	1.75
32858383--32858409	2	13.5	2	100	0	54	48	0	0	51	1.00
32859785--32859823	2	19.5	2	100	0	78	51	0	0	48	1.00
32861181--32861235	15	3.5	15	80	5	56	49	1	3	45	1.30
32861288--32861336	20	2.7	18	77	22	57	51	4	2	42	1.32
32865993--32866018	2	13.0	2	100	0	52	50	0	0	50	1.00
32867238--32867265	12	2.3	12	100	0	56	17	25	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32870133--32870162	14	2.2	13	94	5	51	53	13	0	33	1.40
32874854--32874897	15	2.9	15	86	6	63	59	15	9	15	1.61
32877621--32877863	49	5.0	49	79	6	267	29	25	18	25	1.98
32877635--32877863	97	2.3	99	85	5	313	29	26	18	25	1.98
32883015--32883120	52	2.0	52	98	0	203	17	23	24	33	1.96
32886060--32886089	14	2.2	13	94	5	51	53	13	0	33	1.40
32886518--32886544	14	1.9	14	100	0	54	62	7	7	22	1.46
32889836--32889911	35	2.2	35	85	0	98	28	7	18	44	1.78
32890612--32890648	15	2.4	16	86	9	58	29	13	13	43	1.82
32890620--32890651	15	2.1	15	100	0	64	31	15	15	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345