genome.fa.s12.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  219  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63543521--63543628	31	3.5	31	85	3	119	50	12	16	21	1.77
63544036--63544339	27	11.3	27	89	1	430	24	21	19	34	1.96
63544321--63544558	27	8.8	27	82	0	226	28	7	22	41	1.80
63544081--63544466	54	7.1	54	82	8	244	25	16	20	37	1.93
63544323--63544583	81	3.2	81	80	3	267	28	7	22	40	1.81
63544323--63544557	54	4.4	53	80	3	254	28	6	22	41	1.79
63549061--63549092	10	3.3	10	95	4	57	31	6	0	62	1.20
63553650--63553834	79	2.3	82	86	7	256	26	27	22	23	1.99
63553631--63553834	40	5.1	40	84	8	256	25	27	22	24	2.00
63561664--63561798	39	3.5	38	81	8	114	24	30	20	24	1.99
63561686--63561852	40	4.2	40	81	7	189	23	28	23	24	2.00
63561686--63561852	79	2.1	81	83	7	209	23	28	23	24	2.00
63564862--63564962	29	3.5	29	91	4	152	26	25	14	32	1.95
63564858--63564992	58	2.3	58	79	7	157	28	25	14	31	1.94
63564862--63564992	29	4.5	29	86	5	140	28	25	14	32	1.95
63572885--63573013	29	4.5	29	85	7	156	27	25	14	31	1.95
63572884--63573013	57	2.3	56	82	7	154	27	26	14	31	1.95
63580902--63581091	40	4.8	39	77	8	179	24	28	23	24	2.00
63584151--63584392	40	6.1	40	83	7	248	26	27	21	25	1.99
63585625--63585657	10	3.0	11	86	13	50	0	18	0	81	0.68
63592854--63592883	15	2.0	15	93	0	51	50	0	10	40	1.36
63592850--63592912	27	2.3	26	76	10	63	38	0	11	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63594099--63594185	30	2.9	30	82	0	120	10	25	33	31	1.89
63596637--63596987	176	2.0	177	96	0	650	33	9	26	31	1.88
63597914--63597956	5	8.2	5	80	19	52	76	0	2	20	0.89
63597915--63597955	20	2.0	20	90	4	64	80	0	2	17	0.82
63604162--63604188	10	2.7	10	100	0	54	62	0	11	25	1.28
63621578--63621673	43	2.2	43	88	0	147	26	30	19	23	1.98
63621593--63621714	43	2.8	45	83	9	119	25	29	21	23	1.99
63624658--63624799	40	3.5	40	83	1	124	27	23	26	22	1.99
63624697--63624825	40	3.2	39	84	6	152	24	22	27	25	2.00
63632679--63632820	40	3.5	40	83	1	124	27	23	26	22	1.99
63632718--63632846	40	3.2	39	84	6	152	24	22	27	25	2.00
63634833--63634862	15	2.1	15	93	6	53	36	26	6	30	1.82
63635759--63635963	55	3.8	53	80	3	180	20	23	18	37	1.94
63642006--63642172	40	4.2	40	82	2	185	24	26	22	26	2.00
63650023--63650190	40	4.2	40	82	1	185	24	26	22	26	2.00
63651956--63652075	45	2.8	45	79	6	131	33	27	13	25	1.93
63651922--63652075	41	3.6	42	75	8	143	31	29	13	25	1.94
63653217--63653245	14	2.0	15	93	6	51	51	20	0	27	1.47
63654803--63654874	6	11.7	6	75	16	58	73	5	18	2	1.15
63654844--63654890	20	2.3	21	88	3	69	70	4	21	4	1.22
63657879--63657915	13	2.7	14	91	4	58	75	2	18	2	1.04
63657879--63657945	14	4.7	13	77	18	62	71	2	22	2	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63657983--63658023	19	2.1	20	95	4	75	70	4	24	0	1.06
63660069--63660104	10	3.6	10	84	0	54	19	25	19	36	1.95
63660061--63660105	20	2.2	20	88	0	72	22	26	15	35	1.94
63660823--63660935	55	2.1	55	91	3	183	29	14	21	35	1.92
63663007--63663107	28	3.5	28	86	6	114	29	26	13	29	1.94
63671053--63671210	43	3.7	43	76	10	137	32	27	15	24	1.95
63672666--63672702	19	2.0	19	89	5	58	21	8	13	56	1.63
63673877--63673909	17	2.0	17	88	5	50	39	0	15	45	1.46
63689200--63689235	17	2.1	17	100	0	72	36	16	13	33	1.89
63689633--63689664	15	2.0	17	88	11	50	25	0	31	43	1.55
63693707--63693740	15	2.3	15	100	0	68	26	0	20	52	1.46
63695518--63695663	40	3.6	40	83	2	159	23	23	26	26	2.00
63695518--63695670	80	1.9	81	81	9	188	23	22	27	26	2.00
63703571--63703671	40	2.5	40	83	1	130	25	21	25	26	2.00
63703602--63703710	40	2.7	40	82	2	112	25	21	25	27	1.99
63705300--63705444	54	2.7	54	100	0	290	40	6	20	31	1.79
63706570--63706671	47	2.2	47	98	1	197	25	22	22	29	1.99
63718523--63718561	18	2.1	19	90	4	62	71	15	2	10	1.23
63718529--63718567	18	2.2	18	85	0	51	74	10	7	7	1.22
63722105--63722139	15	2.3	15	90	0	52	25	2	2	68	1.17
63722117--63722157	22	2.0	21	85	9	57	21	7	0	70	1.11
63722861--63722914	21	2.6	21	88	5	83	14	35	24	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63726249--63726299	20	2.7	19	82	14	54	41	0	21	37	1.54
63727125--63727256	49	2.7	49	80	5	160	29	21	26	22	1.99
63726988--63727245	142	1.8	138	83	6	340	27	19	27	24	1.99
63728352--63728482	65	2.0	65	95	0	235	42	17	15	24	1.88
63730604--63730656	25	2.1	25	100	0	106	28	18	16	35	1.93
63732060--63732087	14	2.0	14	100	0	56	21	14	28	35	1.92
63744229--63744609	190	2.0	190	98	0	744	30	20	16	32	1.94
63761435--63761473	15	2.6	15	79	0	51	10	17	2	69	1.28
63765753--63765807	26	2.1	27	93	3	94	36	14	21	27	1.93
63767351--63767388	20	1.9	20	100	0	76	21	13	42	23	1.88
63770032--63770070	19	2.1	19	85	4	53	17	2	25	53	1.56
63773277--63773376	31	3.2	30	66	16	78	40	6	15	39	1.71
63773263--63773439	62	2.9	62	82	8	218	39	4	14	41	1.66
63777750--63777856	52	2.1	52	94	0	187	46	18	8	26	1.77
63779729--63779764	18	2.0	18	100	0	72	22	16	5	55	1.62
63782514--63782647	42	3.1	42	75	16	132	23	16	26	34	1.95
63782567--63782660	42	2.2	42	81	5	109	27	18	24	29	1.98
63782589--63782670	43	1.9	42	82	7	103	25	19	25	29	1.99
63786573--63786623	25	2.1	24	85	10	68	54	13	9	21	1.67
63791460--63791534	26	2.9	26	80	2	80	33	16	8	42	1.77
63791705--63791745	6	6.8	6	88	0	64	17	26	0	56	1.41
63791705--63791745	18	2.3	18	100	0	82	17	26	0	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63793795--63793846	26	2.1	26	89	7	81	32	7	5	53	1.53
63796701--63796801	44	2.3	43	83	8	116	25	18	21	33	1.97
63796705--63796862	42	3.7	43	76	9	146	24	18	25	31	1.97
63798096--63798183	34	2.6	34	79	0	95	31	19	19	29	1.96
63798135--63798222	35	2.5	35	87	1	115	31	17	15	35	1.91
63798208--63798266	18	3.3	18	76	9	66	38	15	20	25	1.91
63798539--63798583	24	2.0	21	83	12	54	42	20	15	22	1.89
63798610--63798671	27	2.3	27	85	0	79	22	19	16	41	1.89
63798663--63798998	27	12.4	27	89	0	492	38	16	13	31	1.87
63801783--63801945	37	4.4	37	91	0	254	27	32	17	22	1.96
63802097--63802329	94	2.5	94	94	0	394	27	30	10	32	1.90
63802097--63802329	47	5.0	47	88	0	331	27	30	10	32	1.90
63805230--63805568	123	2.8	123	95	0	597	30	11	25	33	1.91
63805537--63805780	40	6.1	40	88	1	301	24	21	26	27	1.99
63812930--63812968	21	1.9	20	84	5	51	33	0	17	48	1.48
63815228--63815398	42	4.0	43	71	14	129	23	17	23	35	1.95
63826420--63826486	25	2.7	26	81	11	77	28	22	22	26	1.99
63831704--63831925	48	4.6	48	80	3	216	28	20	27	23	1.99
63831701--63831964	96	2.8	96	81	2	280	28	21	28	22	1.99
63831694--63831972	144	1.9	144	85	4	384	27	20	27	24	1.99
63831701--63831972	48	5.7	48	75	10	182	27	20	27	23	1.99
63840407--63840441	17	2.0	18	88	5	54	28	5	2	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63842617--63842654	5	7.8	5	91	2	60	86	0	13	0	0.56
63846215--63846379	27	6.1	27	80	1	152	32	20	20	26	1.97
63846225--63846373	53	2.8	52	75	14	142	32	19	20	27	1.97
63846514--63846593	27	3.0	26	79	12	83	22	22	21	33	1.97
63847820--63847859	18	2.1	18	86	9	53	35	2	10	52	1.48
63855964--63856105	44	3.2	44	70	9	133	27	28	17	26	1.98
63855943--63856243	47	6.6	45	73	6	230	25	28	18	26	1.98
63855940--63856157	91	2.4	91	93	0	373	26	28	19	26	1.99
63855898--63856243	47	7.5	46	70	14	169	25	28	18	27	1.98
63862470--63862778	49	6.4	49	92	3	509	28	8	33	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345