genome.fa.s12.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  120  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31934684--31934747	31	2.1	31	90	0	101	23	25	15	35	1.94
31934939--31935081	24	6.0	24	91	4	209	26	22	22	28	1.99
31934939--31935080	47	3.0	48	90	5	207	26	22	22	28	1.99
31934938--31935081	71	2.0	72	89	4	220	26	22	22	29	1.99
31935131--31935191	20	3.0	20	92	0	104	32	21	11	34	1.89
31935234--31935281	25	1.9	25	86	0	69	25	16	25	33	1.96
31938970--31939020	25	2.0	25	100	0	102	58	15	19	5	1.57
31939276--31939353	30	2.5	31	83	2	104	21	24	20	33	1.97
31939574--31939644	25	2.8	26	89	6	110	28	22	23	25	2.00
31940912--31940941	15	2.1	15	93	6	53	80	0	20	0	0.72
31943365--31943466	28	3.5	29	81	6	109	28	27	14	29	1.95
31949960--31951909	973	2.0	975	99	0	3836	30	23	16	29	1.96
31952325--31952426	28	3.5	29	81	6	109	28	27	14	29	1.95
31956377--31956569	47	4.0	49	78	9	173	30	29	16	24	1.96
31958712--31958820	28	3.9	27	78	8	112	22	27	20	29	1.98
31958720--31958899	56	3.2	56	83	4	240	25	28	17	28	1.97
31958738--31958899	54	2.9	55	84	5	220	24	29	16	29	1.97
31958745--31958899	28	5.6	28	74	11	140	25	29	15	29	1.96
31962463--31962655	47	4.0	49	78	9	173	30	29	16	24	1.96
31968627--31968709	30	2.7	31	90	3	134	21	27	20	30	1.98
31968930--31969000	25	2.8	25	93	2	115	26	22	25	25	2.00
31970392--31970486	31	3.1	31	98	0	181	23	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31970678--31970820	24	6.0	24	88	4	191	27	22	20	29	1.99
31970692--31970819	47	2.7	48	90	3	186	27	22	20	29	1.98
31970677--31970820	71	2.0	72	86	4	202	27	22	20	29	1.98
31970870--31970930	20	3.0	20	92	0	104	32	21	11	34	1.89
31970973--31971020	25	1.9	25	86	0	69	25	16	25	33	1.96
31974633--31974728	25	3.9	25	88	1	104	26	21	2	50	1.60
31974644--31974728	25	3.4	25	90	0	116	24	21	2	51	1.59
31974810--31975486	126	5.4	125	82	5	740	28	17	15	38	1.90
31974821--31975486	251	2.6	251	84	1	861	28	17	15	38	1.90
31974828--31975559	377	1.9	374	78	6	769	30	17	14	37	1.90
31975633--31975687	28	2.0	28	85	0	74	41	14	1	41	1.56
31976024--31976057	18	1.9	18	88	5	52	73	2	5	17	1.16
31978171--31978301	38	3.4	38	93	0	208	33	25	19	20	1.97
31978141--31978301	38	4.2	38	88	1	205	34	26	18	19	1.95
31982109--31982214	51	2.1	51	83	3	133	35	27	13	23	1.92
31991235--31991260	6	4.3	6	100	0	52	50	0	34	15	1.45
31995921--31995968	25	1.9	25	86	0	69	33	25	16	25	1.96
31996012--31996070	20	3.0	20	92	0	100	35	11	20	32	1.89
31996121--31996244	47	2.6	47	92	5	196	29	21	22	25	1.99
31996121--31996244	24	5.2	24	93	3	198	29	21	22	25	1.99
31996455--31996518	31	2.1	31	96	0	119	39	15	21	23	1.92
31996505--31996532	7	4.0	7	100	0	56	57	0	14	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32003848--32003953	51	2.1	51	87	3	151	31	26	16	25	1.97
32008028--32008212	40	4.6	39	85	4	217	28	22	25	23	2.00
32008027--32008233	80	2.6	80	83	4	247	26	22	26	25	2.00
32008026--32008233	40	5.2	39	83	5	211	26	22	25	25	2.00
32015999--32016203	40	5.2	40	82	5	209	26	22	25	24	2.00
32015998--32016203	80	2.6	78	83	5	234	26	22	25	25	2.00
32019339--32019417	29	2.7	29	98	0	149	36	15	24	24	1.93
32019376--32019533	71	2.2	71	88	5	248	34	17	22	25	1.95
32021564--32021667	54	1.9	54	100	0	208	36	21	3	38	1.72
32025761--32025808	25	1.9	25	86	0	69	33	25	16	25	1.96
32025852--32025910	20	3.0	20	94	0	100	35	11	22	30	1.90
32025962--32026104	23	6.1	23	94	3	250	27	21	21	29	1.99
32025961--32026126	23	7.0	23	89	4	226	27	21	22	28	1.99
32025962--32026126	47	3.5	46	89	6	242	27	21	22	28	1.99
32026317--32026380	31	2.1	31	90	0	101	35	15	25	23	1.94
32030292--32030327	8	4.5	8	92	0	54	47	22	22	8	1.77
32030750--32030797	25	1.9	25	86	0	69	33	25	16	25	1.96
32030841--32030899	20	3.0	20	94	0	100	35	11	22	30	1.90
32030951--32031115	23	7.1	23	95	2	278	27	21	21	29	1.99
32030950--32031137	23	8.0	23	90	5	263	28	21	21	28	1.99
32030949--32031136	94	2.0	94	92	4	317	27	22	21	28	1.99
32031327--32031390	31	2.1	31	90	0	101	35	15	25	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32034118--32034245	43	3.0	43	82	6	145	33	27	16	22	1.95
32041661--32041717	29	2.0	28	93	3	96	40	14	35	10	1.80
32044421--32044556	40	3.4	40	88	2	175	25	18	25	31	1.97
32048799--32048974	46	3.8	46	79	12	216	20	21	29	28	1.98
32048796--32048967	93	1.8	93	96	0	317	20	21	29	27	1.98
32056286--32056461	46	3.8	46	79	10	187	21	19	28	30	1.97
32056283--32056454	93	1.8	93	91	0	281	21	19	29	29	1.98
32063953--32064048	48	2.0	48	97	0	183	42	16	11	29	1.83
32067064--32067239	46	3.8	46	76	12	171	28	31	20	19	1.97
32067071--32067243	93	1.9	93	90	0	274	27	31	20	19	1.97
32069329--32069360	2	16.0	2	100	0	64	50	0	0	50	1.00
32070987--32071091	52	2.0	52	98	0	201	26	10	24	38	1.88
32073039--32073075	19	1.9	19	100	0	74	29	16	16	37	1.90
32077223--32077251	6	5.0	6	91	8	51	17	0	0	82	0.66
32087632--32087689	30	1.9	30	92	0	98	32	13	25	27	1.94
32088027--32088299	47	5.8	46	75	13	218	28	20	28	22	1.98
32088026--32088298	94	2.9	95	78	11	303	28	20	28	23	1.99
32088032--32088298	141	1.9	141	80	9	312	28	20	28	22	1.98
32089059--32089139	42	1.9	42	87	5	119	23	16	29	30	1.96
32096001--32096058	30	1.9	30	83	13	75	12	29	34	24	1.91
32099266--32099299	12	2.7	13	86	9	52	23	0	20	55	1.43
32101775--32101913	50	2.9	48	81	2	161	28	27	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32101780--32101936	48	3.2	48	78	1	161	26	27	19	26	1.99
32101903--32101971	35	2.0	35	85	0	93	26	27	20	26	1.99
32101938--32102042	50	2.1	48	82	6	122	25	28	18	27	1.98
32107332--32107378	23	2.0	23	100	0	94	29	12	17	40	1.86
32108641--32108667	6	4.5	6	100	0	54	18	48	18	14	1.82
32112028--32112067	20	2.0	20	90	9	64	25	17	27	30	1.97
32113376--32113408	16	2.0	17	88	5	50	48	6	12	33	1.65
32120805--32120853	24	2.0	24	100	0	98	32	20	12	34	1.90
32125049--32125225	37	4.8	37	95	0	300	24	31	20	24	1.98
32125398--32125610	48	4.4	48	98	0	417	30	28	7	34	1.84
32135900--32135946	21	2.4	19	82	10	58	46	23	2	27	1.63
32138817--32138882	1	66.0	1	75	0	60	10	0	1	87	0.60
32138817--32138882	22	3.2	20	79	14	71	10	0	1	87	0.60
32143206--32143307	44	2.4	44	80	8	111	26	14	24	34	1.94
32144893--32144920	3	9.3	3	100	0	56	67	0	32	0	0.91
32145195--32145261	30	2.2	30	82	10	75	22	11	17	47	1.80
32145462--32145521	29	2.1	29	96	0	111	41	13	5	40	1.66
32147236--32147277	21	2.0	21	85	0	57	19	2	14	64	1.39
32168007--32168036	15	2.0	15	93	0	51	63	6	3	26	1.35
32170665--32170693	13	2.1	14	93	6	51	34	6	0	58	1.25
32170930--32170967	20	1.9	20	89	10	60	23	5	10	60	1.50
32171518--32171542	6	4.2	6	100	0	50	0	32	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32180614--32180672	19	3.1	19	97	0	109	32	20	10	37	1.86
32184284--32184370	33	2.7	33	78	8	106	37	9	10	42	1.71
32189381--32189475	42	2.2	43	81	5	113	30	17	21	30	1.96
32190177--32190223	10	4.4	10	80	15	58	12	4	27	55	1.56
32190831--32190912	24	3.4	23	65	25	62	28	8	24	39	1.84
32190808--32190911	48	2.2	48	98	1	201	26	9	25	38	1.86
32193130--32193366	48	4.8	49	83	3	278	26	16	27	29	1.97
32197066--32197157	49	1.9	48	84	4	123	23	27	16	32	1.96
32201860--32201895	18	2.0	18	100	0	72	38	22	11	27	1.88
32202977--32203083	43	2.5	44	82	7	132	25	20	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345