genome.fa.s12.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  161  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44747184--44747296	54	2.1	54	91	0	181	32	7	20	38	1.82
44747273--44747484	81	2.6	81	80	0	255	40	7	21	30	1.80
44747273--44747484	27	7.9	27	85	0	228	40	7	21	30	1.80
44749769--44750325	49	11.4	49	94	0	945	28	8	32	29	1.87
44750427--44750547	37	3.3	37	95	2	217	25	19	33	21	1.96
44753724--44753811	6	14.3	6	68	17	56	47	14	18	19	1.82
44753724--44753811	19	4.8	18	67	18	56	47	14	18	19	1.82
44753735--44753811	31	2.5	31	82	0	100	48	14	18	19	1.82
44753910--44754011	27	3.8	26	88	5	132	36	21	23	18	1.95
44754170--44754234	22	3.0	22	75	8	69	33	21	23	21	1.97
44754660--44754928	27	10.0	27	83	2	292	24	19	18	37	1.94
44754686--44754927	81	3.0	80	88	3	342	24	18	18	38	1.93
44754975--44755127	27	5.6	27	81	6	139	28	9	20	41	1.83
44755056--44755141	27	3.2	27	93	0	136	30	6	23	39	1.81
44755091--44755357	27	9.9	27	88	1	268	39	6	22	31	1.79
44755743--44755784	16	2.6	16	96	0	75	42	16	28	11	1.84
44758406--44758599	67	2.8	67	89	6	266	33	17	27	21	1.96
44758440--44758599	67	2.3	68	95	4	286	35	18	27	19	1.95
44765405--44765667	66	3.9	66	83	6	244	33	18	26	21	1.96
44765472--44765627	66	2.3	68	94	2	271	33	16	27	23	1.95
44778365--44778438	28	2.6	28	89	4	105	31	24	14	29	1.95
44781394--44781420	14	1.9	14	100	0	54	44	22	11	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44785988--44786093	28	3.9	27	78	10	101	33	24	14	28	1.94
44788088--44788136	17	2.8	18	74	22	50	24	18	22	34	1.96
44788958--44789124	40	4.2	40	79	6	169	25	21	27	25	1.99
44796089--44796137	17	2.8	18	74	22	50	24	18	22	34	1.96
44796959--44797125	40	4.2	40	79	6	169	25	21	27	25	1.99
44799119--44799208	44	2.0	44	100	0	180	31	15	27	25	1.96
44810061--44810153	48	1.9	48	95	0	168	39	6	25	27	1.80
44810132--44810174	21	2.0	21	100	0	86	44	4	23	27	1.73
44810084--44810221	69	2.0	69	97	0	258	40	7	24	27	1.81
44810153--44810599	48	9.3	48	92	0	687	36	7	26	29	1.83
44810644--44810751	37	2.9	37	91	0	180	23	21	32	23	1.98
44813990--44814164	46	3.8	44	74	13	158	22	21	26	29	1.99
44813986--44814156	92	1.8	93	88	3	265	22	21	27	28	1.99
44817502--44817610	37	2.9	37	94	0	182	27	30	19	22	1.98
44817757--44817999	48	5.1	48	96	0	432	30	27	7	34	1.84
44819083--44819596	40	12.9	40	89	0	634	28	27	19	24	1.99
44820826--44820934	37	2.9	37	94	0	182	27	31	19	22	1.97
44821081--44822128	48	21.1	48	90	7	1461	29	28	8	33	1.86
44821585--44821617	16	2.1	16	100	0	66	18	39	12	30	1.87
44821537--44821665	64	2.0	64	98	0	249	27	31	7	33	1.85
44821506--44821713	112	1.9	112	96	0	389	29	29	7	33	1.84
44830608--44830681	37	2.0	37	97	0	139	17	10	22	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44833172--44833349	40	4.5	40	82	4	182	26	27	20	25	1.99
44841276--44841453	40	4.5	40	80	4	173	25	27	20	26	1.99
44841276--44841453	80	2.2	80	81	4	191	25	27	20	26	1.99
44844638--44844777	53	2.6	53	81	5	174	35	17	24	22	1.96
44844580--44844782	55	3.8	53	76	7	185	34	16	24	25	1.95
44848210--44848310	28	3.5	28	86	6	114	28	13	27	29	1.95
44848239--44848310	29	2.5	28	91	6	110	29	13	27	29	1.95
44850117--44850366	41	6.0	41	86	5	344	35	25	19	20	1.96
44850335--44850391	25	2.3	25	100	0	114	35	28	21	15	1.94
44850294--44850432	66	2.1	66	93	0	233	35	27	20	17	1.94
44850360--44850443	41	2.0	41	97	0	159	36	26	20	16	1.93
44855003--44855032	2	15.0	2	100	0	60	50	0	0	50	1.00
44857504--44857663	29	5.5	29	82	4	180	25	31	16	26	1.97
44859949--44860046	27	3.6	27	87	2	126	44	21	8	25	1.79
44859949--44860061	27	4.2	27	86	6	115	44	19	7	28	1.79
44860064--44860199	27	5.0	27	83	1	166	33	17	21	27	1.96
44860331--44860361	10	3.1	10	100	0	62	32	29	9	29	1.89
44860834--44860885	27	2.0	26	88	3	77	17	25	21	36	1.94
44861111--44861241	6	21.3	6	70	18	74	19	18	13	48	1.81
44861111--44861220	31	3.5	31	71	18	102	20	19	13	47	1.82
44861114--44861178	25	2.6	25	82	4	78	21	20	13	44	1.86
44861120--44861227	37	2.9	37	81	9	130	18	19	14	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44862410--44862625	41	5.2	41	87	6	301	37	24	19	18	1.94
44874311--44874493	52	3.6	51	82	4	210	26	28	15	28	1.96
44874341--44874488	52	2.9	51	89	7	214	28	29	13	28	1.94
44877132--44877210	29	2.7	29	86	5	106	27	32	15	24	1.95
44883233--44883272	21	2.0	20	85	5	53	45	25	0	30	1.54
44886098--44886138	22	1.9	22	90	5	66	29	0	24	46	1.53
44888953--44889078	62	2.0	62	90	0	198	38	18	15	27	1.90
44889746--44889804	29	2.0	29	100	0	118	16	30	16	35	1.92
44891312--44891352	20	2.0	20	90	0	64	26	26	9	36	1.88
44891714--44891750	5	7.6	5	93	6	67	81	0	0	18	0.70
44891714--44891750	14	2.6	14	95	4	65	81	0	0	18	0.70
44897739--44897763	1	25.0	1	100	0	50	0	0	0	100	0.00
44903514--44903560	24	2.0	24	91	0	76	42	8	12	36	1.74
44904161--44904215	10	5.7	10	76	8	51	60	0	7	32	1.24
44904162--44904215	19	2.8	19	83	8	65	61	0	7	31	1.24
44904182--44904251	18	3.8	17	73	17	59	61	2	5	30	1.34
44905610--44905652	20	2.2	20	82	0	50	23	25	16	34	1.95
44905835--44905879	9	4.7	9	82	15	54	44	0	0	55	0.99
44906498--44906538	19	2.1	20	86	13	59	41	0	4	53	1.22
44907479--44907530	25	2.1	25	96	0	95	40	21	3	34	1.71
44909102--44909132	16	1.9	16	93	0	53	35	22	0	41	1.54
44909099--44909138	20	2.0	20	85	0	53	37	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44909363--44909578	55	4.0	54	80	7	251	22	25	16	35	1.94
44909371--44909571	108	1.8	110	88	4	309	22	25	16	34	1.95
44912114--44912146	14	2.3	15	89	5	50	66	0	15	18	1.25
44915375--44915434	23	2.6	22	76	10	57	36	3	5	55	1.38
44915921--44915950	7	4.1	7	95	4	51	56	3	0	40	1.16
44915966--44916006	21	2.0	21	95	0	73	31	0	0	68	0.90
44916173--44916206	14	2.3	15	95	5	61	79	0	0	20	0.73
44920598--44920775	40	4.5	40	89	3	227	22	24	29	24	1.99
44923660--44923716	25	2.2	26	84	9	73	8	7	3	80	1.00
44924705--44924805	3	33.7	3	77	7	98	29	4	3	61	1.35
44929536--44929577	19	2.2	20	86	4	59	26	19	7	47	1.74
44932672--44932762	37	2.4	37	85	1	128	25	29	19	25	1.99
44932862--44933076	49	4.4	49	92	0	358	30	31	9	29	1.88
44941687--44942035	87	4.1	85	92	2	531	34	20	24	19	1.96
44941708--44942039	43	7.7	43	71	11	245	33	20	24	20	1.97
44942792--44942848	25	2.2	26	84	9	73	8	8	3	78	1.05
44943838--44943929	3	30.7	3	75	8	80	29	5	4	60	1.38
44951530--44951657	46	2.7	48	77	15	151	29	28	18	22	1.98
44951535--44951665	47	2.8	45	76	11	140	29	29	19	22	1.98
44959021--44959149	47	2.8	46	79	12	140	22	18	27	31	1.97
44960252--44960277	2	13.0	2	100	0	52	50	0	0	50	1.00
44962958--44962993	18	2.0	18	100	0	72	55	16	11	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44963899--44963971	28	2.6	27	82	10	76	39	21	20	17	1.92
44968121--44968168	3	16.0	3	82	8	62	37	0	2	60	1.09
44970409--44970471	24	2.6	24	97	0	117	34	25	17	22	1.95
44972382--44972419	16	2.3	17	90	4	60	39	0	23	36	1.55
44972376--44972419	17	2.6	16	85	7	61	38	0	25	36	1.56
44972596--44972678	38	2.2	38	87	6	116	14	25	31	28	1.95
44983761--44983797	14	2.8	13	88	11	58	62	10	5	21	1.48
44990794--44990851	28	2.0	29	93	3	100	36	25	22	15	1.94
45004593--45004629	17	2.2	17	100	0	74	45	0	5	48	1.25
45014828--45014857	14	2.1	14	100	0	60	13	16	36	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345