genome.fa.s12.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  170  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47722859--47723116	49	5.3	49	92	1	382	32	7	29	29	1.85
47728017--47728071	20	2.8	19	78	5	65	40	21	5	32	1.76
47728022--47728071	19	2.5	20	83	3	66	38	24	6	32	1.79
47729428--47729463	18	2.0	18	94	0	63	27	30	0	41	1.56
47731944--47732013	27	2.6	27	97	2	131	31	27	12	28	1.93
47734193--47734417	124	1.8	124	85	1	317	31	11	23	34	1.89
47734412--47734541	40	3.2	40	82	4	165	23	24	28	23	2.00
47734374--47734541	80	2.1	80	81	6	198	25	23	27	23	2.00
47742560--47742713	29	5.3	29	91	0	229	24	14	31	29	1.94
47748316--47748350	17	2.0	18	94	5	63	17	40	31	11	1.85
47755723--47755764	21	2.0	21	90	0	66	19	45	14	21	1.85
47773636--47773843	40	5.2	40	81	2	202	25	26	22	25	2.00
47780100--47780241	40	3.5	40	83	0	158	22	28	23	26	1.99
47786205--47786412	40	5.2	39	82	3	202	25	25	23	25	2.00
47786205--47786411	80	2.6	80	82	3	238	25	26	23	25	2.00
47793022--47793069	21	2.3	21	86	13	73	27	6	2	64	1.28
47797816--47797985	47	3.6	47	97	0	313	31	8	30	29	1.87
47797816--47798235	48	8.8	48	90	2	317	33	8	28	29	1.86
47797963--47798230	48	5.6	48	93	0	428	34	8	27	29	1.86
47798279--47798364	37	2.3	37	97	0	163	23	19	33	23	1.97
47800260--47800771	40	12.8	40	93	1	821	26	20	27	26	1.99
47802860--47803073	49	4.4	49	92	0	347	30	28	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47806911--47807133	79	2.8	80	91	2	360	26	28	21	23	1.99
47806911--47807133	40	5.6	40	94	1	369	26	28	21	23	1.99
47807062--47807250	40	4.7	40	81	5	150	27	28	20	23	1.99
47806928--47807247	119	2.7	119	83	4	335	27	28	19	23	1.98
47809230--47809443	49	4.4	49	92	0	347	30	28	8	32	1.87
47813283--47813506	40	5.6	40	92	0	360	26	28	20	24	1.99
47813435--47813623	40	4.7	40	81	5	150	27	28	20	23	1.99
47813300--47813620	120	2.7	119	82	5	328	27	28	19	24	1.99
47815603--47815815	49	4.4	49	90	1	338	30	28	8	32	1.87
47815598--47815815	97	2.2	98	91	2	348	30	28	8	32	1.86
47821105--47821274	47	3.6	47	97	0	313	31	8	30	29	1.87
47821105--47821524	48	8.8	48	90	2	317	33	8	28	29	1.86
47821252--47821519	48	5.6	48	93	0	428	34	8	27	29	1.86
47821568--47821653	37	2.3	37	97	0	163	23	19	33	23	1.97
47823377--47823521	40	3.6	39	79	3	137	24	24	28	22	2.00
47823378--47823566	80	2.4	81	77	4	186	23	24	29	22	1.99
47831457--47831640	40	4.6	39	75	6	138	26	23	27	22	2.00
47831497--47831685	80	2.4	81	77	4	186	23	24	29	22	1.99
47835791--47835922	29	4.6	29	80	9	128	27	26	15	31	1.96
47840980--47841081	42	2.4	42	88	0	141	32	22	14	30	1.94
47846591--47846666	33	2.3	33	93	0	125	31	17	23	27	1.97
47846607--47846680	33	2.2	33	87	0	103	31	18	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47846716--47847106	194	2.0	194	91	1	640	35	12	20	31	1.90
47851817--47851936	44	2.8	43	83	5	127	31	27	18	22	1.97
47859449--47859518	27	2.6	27	95	2	122	30	27	14	28	1.95
47866217--47866340	39	3.2	39	87	1	185	21	19	33	25	1.97
47866234--47866376	40	3.6	40	83	0	119	21	21	32	23	1.98
47870632--47870701	27	2.6	27	95	2	122	30	27	14	28	1.95
47872411--47872472	18	2.8	24	72	27	82	24	8	24	43	1.81
47877683--47877774	45	2.0	45	100	0	184	31	26	10	31	1.90
47879344--47879417	27	2.8	27	77	2	78	45	9	13	31	1.75
47883882--47884568	257	2.6	253	81	12	738	45	5	8	40	1.57
47884054--47884568	140	3.7	135	84	7	642	45	5	8	40	1.57
47884563--47884612	16	3.1	16	94	2	82	30	14	0	56	1.39
47886940--47887136	10	20.3	9	65	15	56	59	2	5	32	1.32
47886973--47887036	28	2.3	27	76	7	65	64	3	3	29	1.24
47887076--47887133	19	2.8	22	73	21	63	60	1	8	29	1.36
47887352--47887436	17	5.3	16	72	17	61	29	1	0	69	0.96
47893932--47894115	40	4.6	39	75	6	138	26	23	27	22	2.00
47893972--47894160	80	2.4	81	77	4	186	23	24	29	22	1.99
47899573--47899797	40	5.6	40	80	2	245	25	24	26	24	2.00
47899573--47899797	120	1.9	121	83	8	298	25	24	26	24	2.00
47904582--47904643	24	2.6	25	74	7	65	22	17	30	29	1.97
47911912--47911973	24	2.6	24	84	0	79	20	16	33	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47913275--47913307	14	2.4	14	94	0	57	33	0	45	21	1.52
47920878--47920936	29	2.0	29	96	0	109	35	22	10	32	1.87
47923559--47923826	49	5.5	49	97	0	491	29	8	31	29	1.88
47923928--47924012	37	2.3	37	93	0	143	23	20	35	21	1.96
47932363--47932484	37	3.3	37	97	0	226	21	33	19	25	1.97
47932586--47932861	49	5.4	49	85	10	372	29	32	8	28	1.87
47932648--47932767	61	2.0	61	100	0	240	33	31	6	28	1.83
47932597--47932816	110	2.0	110	97	0	413	31	32	7	29	1.84
47937427--47937479	5	10.6	5	84	15	74	60	0	0	39	0.97
47958868--47958916	21	2.3	22	80	16	59	36	8	34	20	1.82
47963707--47963750	19	2.3	19	100	0	88	20	34	22	22	1.97
47974314--47974414	28	3.5	29	86	6	125	29	26	13	29	1.94
47976605--47976757	39	3.9	39	90	0	234	23	19	32	24	1.98
47979350--47979534	91	2.0	94	87	3	268	28	17	25	28	1.98
47984184--47984221	19	2.0	20	89	5	60	26	18	2	52	1.58
47984197--47984310	55	2.1	55	83	3	140	22	26	3	47	1.67
47984549--47984596	18	2.5	20	77	22	57	41	6	0	52	1.27
47992350--47992390	12	3.7	12	75	18	52	51	19	19	9	1.74
47992346--47992394	21	2.3	21	100	0	98	55	16	20	8	1.66
47996770--47996926	82	1.9	82	89	0	242	26	12	19	41	1.87
48012880--48013114	117	2.0	117	95	0	425	34	16	17	32	1.92
48017353--48017443	37	2.4	37	90	1	146	23	32	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48017572--48017609	18	2.1	18	100	0	76	28	44	10	15	1.80
48017590--48017770	49	3.7	49	94	1	301	28	34	9	27	1.88
48017590--48017770	97	1.9	98	91	1	301	28	34	9	27	1.88
48021287--48021470	40	4.6	40	82	4	174	28	22	26	23	1.99
48023569--48023614	23	2.0	24	86	4	67	23	4	50	21	1.67
48025014--48025223	40	5.2	40	88	2	305	21	28	24	25	1.99
48032235--48032444	40	5.2	40	88	2	305	21	28	24	25	1.99
48034159--48034234	40	1.9	40	94	0	134	17	26	19	36	1.94
48035402--48035612	46	4.5	46	71	18	134	21	29	18	29	1.97
48036945--48037313	45	7.8	47	73	12	233	25	28	16	28	1.97
48036940--48037340	48	8.5	47	69	17	192	25	28	17	28	1.97
48037036--48037353	93	3.4	93	75	13	278	24	29	18	27	1.98
48054053--48054151	28	3.5	28	87	4	119	27	15	27	30	1.96
48062053--48062151	28	3.5	28	87	4	119	27	15	27	30	1.96
48069620--48069684	29	2.2	29	94	0	112	30	15	27	26	1.96
48069785--48069815	2	15.5	2	100	0	62	48	0	0	51	1.00
48077399--48077570	50	3.5	49	84	4	229	25	16	27	30	1.97
48077673--48077724	27	2.0	26	81	11	61	38	1	23	36	1.66
48078790--48078870	43	1.9	42	82	2	99	24	18	24	32	1.97
48085285--48085360	27	2.8	27	85	0	98	39	22	18	19	1.92
48092299--48092429	30	4.5	30	86	8	171	28	25	13	32	1.94
48092298--48092429	58	2.3	58	85	4	176	28	26	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48095893--48096015	39	3.2	39	92	3	203	26	32	19	21	1.97
48102996--48103126	30	4.5	30	86	8	171	28	25	13	32	1.94
48102995--48103126	58	2.3	58	85	4	176	28	26	13	31	1.94
48107033--48107142	55	2.0	55	98	0	211	34	13	25	26	1.93
48118968--48118999	16	2.0	16	93	0	55	50	34	6	9	1.60
48120655--48120822	46	3.6	46	77	14	175	22	19	29	29	1.98
48120645--48120815	93	1.8	93	88	2	263	21	19	29	29	1.98
48122551--48122592	8	5.4	8	83	11	52	52	23	19	4	1.65
48122550--48122592	16	2.8	15	86	6	68	51	25	18	4	1.66
48122816--48122920	28	3.7	29	80	9	137	26	18	32	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345