genome.fa.s12.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12 103066607 
Parameters: 2 7 7 80 10 50 1000
Length:  103066607

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   

This is table  193  of  345  ( 41379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54978241--54978487	54	4.6	54	74	7	171	40	21	8	30	1.82
54978417--54978495	27	2.9	27	83	3	88	40	17	10	31	1.83
54978270--54978487	81	2.7	79	76	11	233	41	21	8	28	1.83
54978547--54978609	27	2.3	27	83	5	74	33	15	25	25	1.95
54979854--54979930	9	7.9	9	75	16	73	35	7	20	36	1.82
54979852--54979934	20	4.2	20	93	0	148	36	10	19	33	1.86
54979989--54980130	24	6.0	24	90	4	209	28	21	22	28	1.99
54983090--54983188	27	3.7	27	82	5	112	40	19	11	29	1.86
54983090--54983196	54	2.0	54	83	7	137	38	20	11	29	1.87
54983174--54983235	27	2.3	27	88	0	88	35	29	6	29	1.82
54983085--54983207	54	2.3	54	77	7	133	38	21	10	30	1.87
54983209--54983290	38	2.2	38	86	0	110	23	29	8	39	1.84
54983185--54983242	27	2.1	27	96	0	107	29	31	5	34	1.79
54983185--54983316	65	2.0	65	88	0	192	25	27	9	37	1.88
54983246--54983380	27	5.0	27	86	3	182	28	21	9	40	1.84
54983339--54983606	27	9.9	27	75	11	136	40	20	8	30	1.82
54983244--54983406	54	3.0	55	83	1	141	30	21	9	39	1.84
54983358--54983615	54	4.7	54	72	11	177	39	20	9	30	1.84
54983358--54983554	81	2.4	79	76	9	207	40	22	9	28	1.84
54983563--54983614	27	1.9	27	88	7	79	40	11	11	36	1.78
54983666--54983733	27	2.5	27	83	4	84	33	17	25	23	1.96
54984889--54984936	25	1.9	25	86	0	69	33	25	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54984975--54985051	9	7.9	9	72	16	64	35	9	20	35	1.85
54984984--54985055	11	7.1	11	70	17	66	36	12	19	31	1.89
54984973--54985055	20	4.2	20	96	0	157	36	12	19	32	1.88
54985109--54985298	24	8.0	24	85	4	244	28	20	21	30	1.98
54985491--54985554	31	2.1	31	84	0	83	39	12	23	25	1.90
54988923--54988954	16	2.0	16	93	0	55	50	28	6	15	1.68
54992003--54992034	16	2.0	16	93	0	55	46	37	9	6	1.61
54996567--54996606	21	2.0	21	90	5	64	22	30	37	10	1.87
54998478--54998699	46	4.8	46	84	7	297	22	20	27	29	1.98
55000612--55000738	50	2.6	50	81	3	141	25	31	17	25	1.97
55000608--55000786	48	3.7	49	80	5	150	25	31	17	25	1.97
55000706--55000877	48	3.7	46	81	10	181	23	30	18	27	1.97
55000847--55000914	34	1.9	36	91	5	113	26	27	17	27	1.98
55001034--55001165	71	1.9	71	100	0	264	41	16	6	35	1.73
55015883--55016045	46	3.5	46	88	4	222	24	31	15	27	1.96
55028257--55028286	2	15.0	2	100	0	60	50	0	0	50	1.00
55034423--55034492	27	2.6	27	95	2	122	30	27	14	28	1.95
55042559--55042730	93	1.8	93	96	0	317	27	30	22	20	1.98
55042551--55042726	46	3.8	46	81	10	232	28	29	21	20	1.98
55045109--55045197	30	3.0	30	80	8	101	57	15	16	10	1.65
55045109--55045188	15	5.4	15	80	7	92	58	13	17	10	1.62
55045120--55045197	15	5.2	15	78	9	79	56	15	16	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55048141--55048312	93	1.8	93	96	0	317	27	30	22	20	1.98
55048133--55048308	46	3.8	46	81	10	232	28	29	21	20	1.98
55050797--55050866	27	2.6	27	95	2	122	30	27	14	28	1.95
55061569--55062035	49	9.7	49	92	2	723	32	8	30	28	1.88
55063446--55063637	40	4.8	40	90	1	278	27	20	27	25	1.99
55067359--55067727	146	2.6	144	89	3	548	32	8	30	28	1.87
55067359--55067727	49	7.7	49	90	3	545	32	8	30	28	1.87
55068695--55069155	48	9.6	47	77	6	397	27	18	28	25	1.98
55068684--55069157	144	3.3	142	85	2	576	27	18	28	25	1.98
55068695--55069155	239	1.9	239	85	4	626	27	18	28	25	1.98
55070832--55070993	45	3.6	45	90	3	231	25	27	23	24	2.00
55078816--55078899	32	2.6	33	86	5	118	38	5	40	15	1.72
55082118--55082179	28	2.2	28	100	0	124	20	32	20	25	1.98
55083510--55083535	2	13.0	2	100	0	52	50	0	0	50	1.00
55084121--55084150	15	1.9	16	93	6	53	60	0	0	40	0.97
55084777--55084810	18	1.9	18	88	5	52	32	11	0	55	1.36
55086422--55086477	3	18.7	3	100	0	112	67	0	0	32	0.91
55088898--55088955	28	2.1	28	100	0	116	37	6	6	48	1.57
55089810--55089840	12	2.6	12	89	0	53	87	0	12	0	0.55
55089929--55089985	19	2.8	20	75	20	55	45	3	0	50	1.18
55090349--55090382	2	17.0	2	100	0	68	50	0	0	50	1.00
55090641--55090687	22	2.1	22	84	7	60	31	0	2	65	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55093243--55093431	49	3.8	49	78	2	216	25	17	25	30	1.98
55093240--55093432	100	1.9	100	91	0	314	25	18	25	29	1.98
55095482--55095596	55	2.1	56	80	11	130	33	21	25	19	1.97
55095508--55095596	27	3.2	27	85	7	117	31	23	25	19	1.98
55095703--55095794	28	3.3	28	95	3	159	30	6	28	34	1.82
55096044--55096083	8	5.0	8	93	0	62	5	25	25	45	1.73
55101308--55101485	40	4.5	40	78	4	144	21	24	30	23	1.99
55109351--55109534	40	4.6	39	76	9	140	26	23	27	22	2.00
55109395--55109543	80	1.9	80	82	2	192	22	24	30	23	1.99
55117265--55117374	40	2.8	40	82	0	139	24	26	22	26	2.00
55126191--55126420	55	4.3	53	75	9	202	34	15	26	23	1.94
55126198--55126398	108	1.8	110	82	4	264	32	15	27	24	1.95
55134874--55134916	4	9.8	4	85	14	50	20	4	4	69	1.25
55136441--55136486	15	3.0	15	84	12	58	15	0	2	82	0.76
55136442--55136484	20	2.2	20	87	8	61	13	0	2	83	0.74
55139659--55139705	18	2.4	20	83	16	55	12	25	2	59	1.45
55139802--55139894	36	2.6	36	75	11	93	11	16	2	69	1.27
55142279--55142393	55	2.1	56	80	8	128	34	20	24	20	1.96
55142304--55142393	27	3.2	27	82	7	110	32	22	24	21	1.98
55142499--55142587	28	3.2	28	91	0	151	31	7	25	34	1.85
55144780--55144958	40	4.5	40	77	7	141	24	27	24	23	2.00
55154260--55154322	28	2.2	29	88	8	94	31	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55154430--55154513	27	3.1	27	98	0	159	32	8	25	34	1.85
55156820--55156859	19	2.1	19	90	0	62	52	12	7	27	1.66
55162669--55162718	24	2.1	24	84	0	64	28	24	14	34	1.93
55166446--55166489	18	2.4	19	81	11	56	9	25	0	65	1.21
55168503--55168552	24	2.1	24	92	0	82	30	24	16	30	1.96
55179949--55180049	28	3.5	30	82	6	118	29	14	26	28	1.95
55179978--55180053	29	2.7	28	76	13	75	30	14	26	28	1.95
55184513--55184679	42	3.9	41	75	13	133	26	20	26	25	1.99
55186474--55186562	42	2.1	42	85	0	115	24	6	15	52	1.67
55190065--55190175	57	1.9	57	96	0	204	37	27	4	29	1.77
55192135--55192297	40	4.1	40	79	1	166	25	26	22	25	2.00
55194814--55194840	8	3.4	8	100	0	54	22	22	0	55	1.44
55208280--55208308	14	2.0	15	93	6	51	20	20	6	51	1.70
55216588--55216760	93	1.9	93	86	2	249	21	19	28	31	1.97
55227292--55227427	29	4.7	29	86	3	157	24	30	15	29	1.95
55227267--55227426	58	2.8	58	81	0	176	23	33	15	27	1.95
55234058--55234193	29	4.7	29	86	3	157	24	30	15	29	1.95
55234033--55234192	58	2.8	58	81	0	176	23	33	15	27	1.95
55236154--55236219	34	1.9	34	84	6	89	34	21	19	24	1.96
55238812--55238913	31	3.1	31	88	9	132	23	21	15	39	1.92
55238789--55238896	38	2.8	38	92	1	180	22	22	15	39	1.91
55239105--55239223	24	5.0	24	85	9	154	26	24	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55239105--55239223	47	2.5	48	89	8	172	26	24	21	27	1.99
55239274--55239333	20	3.0	20	90	0	102	31	20	11	36	1.88
55239376--55239423	25	1.9	25	86	0	69	25	16	25	33	1.96
55247099--55247200	31	3.1	31	88	9	132	23	21	15	39	1.92
55247076--55247183	38	2.8	38	92	1	180	22	22	15	39	1.91
55247392--55247509	23	5.0	24	84	10	145	26	24	21	27	1.99
55247392--55247509	47	2.5	48	87	9	163	26	24	21	27	1.99
55247560--55247619	20	3.0	20	90	0	102	31	20	11	36	1.88
55247662--55247709	25	1.9	25	86	0	69	25	16	25	33	1.96
55251934--55251990	28	2.0	28	100	0	114	35	33	3	28	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345