genome.fa.s11.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  110  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35258549--35258859	142	2.2	139	81	6	342	25	18	30	26	1.98
35258642--35258861	47	4.8	45	78	11	191	25	18	30	26	1.98
35262084--35262227	50	2.9	50	88	0	207	27	20	26	25	1.99
35264347--35264514	40	4.2	40	83	4	106	25	27	23	23	2.00
35264370--35264514	40	3.6	40	85	4	193	23	26	24	25	2.00
35265700--35265775	38	2.0	38	97	0	143	31	22	13	32	1.92
35272391--35272570	40	4.5	39	80	6	175	23	26	25	25	2.00
35273759--35273834	38	2.0	38	94	0	134	31	22	11	34	1.90
35278242--35278276	16	2.2	16	100	0	70	22	5	25	45	1.74
35281291--35281325	11	3.2	11	91	0	52	71	0	2	25	1.00
35281299--35281332	10	3.3	10	91	4	50	73	0	5	20	1.04
35281416--35281460	24	1.9	23	86	4	63	40	8	4	46	1.55
35282157--35282195	17	2.3	17	90	0	60	71	0	17	10	1.12
35286705--35286730	13	2.0	13	100	0	52	7	0	30	61	1.24
35304026--35304210	27	6.8	27	88	3	255	30	24	6	38	1.81
35304012--35304210	82	2.4	80	87	2	263	29	25	7	38	1.82
35304242--35304392	27	5.6	27	82	6	173	41	21	7	29	1.81
35304242--35304391	81	1.9	81	86	8	216	42	20	8	29	1.81
35304348--35304455	27	3.9	27	74	13	94	41	19	8	30	1.81
35304496--35304569	27	2.7	27	76	12	71	37	20	20	21	1.94
35305281--35305348	20	3.4	20	89	4	102	39	10	17	32	1.84
35305396--35305515	52	2.4	51	92	2	197	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35305396--35305518	26	4.8	26	86	1	169	27	22	21	27	1.99
35305664--35305755	42	2.2	42	88	0	130	30	15	20	33	1.93
35305779--35305945	31	5.4	31	92	0	273	30	14	25	28	1.95
35305779--35305983	93	2.2	93	88	5	258	30	16	25	27	1.96
35317285--35317323	8	4.5	8	84	15	51	69	2	2	25	1.14
35323024--35323248	40	5.6	40	81	2	263	24	27	23	24	2.00
35334887--35335165	40	7.0	40	90	0	414	23	20	28	27	1.99
35347019--35347043	13	1.9	13	100	0	50	56	20	0	24	1.43
35350846--35351001	49	3.2	49	82	1	179	23	26	20	29	1.99
35351049--35351157	46	2.3	46	82	6	121	24	29	17	28	1.97
35358194--35358509	47	6.7	47	79	12	296	22	29	21	27	1.99
35361699--35361860	46	3.5	45	81	6	148	25	27	17	29	1.97
35364182--35364206	13	1.9	13	100	0	50	12	0	0	88	0.53
35366003--35366173	93	1.8	93	94	0	306	28	28	21	21	1.99
35365998--35366170	46	3.7	46	79	13	210	28	27	21	21	1.99
35373087--35373257	46	3.7	46	79	13	215	28	28	21	21	1.98
35373092--35373262	93	1.8	93	94	0	306	28	29	21	21	1.98
35375717--35375763	21	2.1	23	88	7	71	53	0	0	46	1.00
35375711--35375758	20	2.4	20	76	10	62	56	0	0	43	0.99
35379821--35379912	29	3.2	27	73	17	78	45	0	3	51	1.17
35379793--35379950	59	2.7	58	87	6	221	44	0	2	52	1.19
35380040--35380135	44	2.1	46	86	7	135	34	25	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35380118--35380183	16	4.1	16	88	0	96	25	27	4	42	1.74
35380607--35380643	18	2.1	18	90	10	58	21	45	2	29	1.65
35384100--35384277	89	2.0	89	93	0	302	25	28	14	31	1.94
35389004--35389062	25	2.4	25	85	0	73	33	16	23	25	1.96
35389845--35389935	45	2.0	45	97	0	173	40	5	15	38	1.70
35391276--35391489	69	3.1	69	66	22	194	36	17	7	37	1.79
35391274--35391532	138	1.9	138	99	0	509	38	18	7	35	1.79
35412788--35412902	43	2.7	44	84	12	150	35	26	13	24	1.93
35416404--35416442	18	2.1	19	86	13	55	30	28	0	41	1.57
35420871--35420913	21	2.0	21	82	8	52	48	25	2	23	1.62
35422162--35422292	47	2.8	47	81	4	140	32	25	14	27	1.95
35425928--35425988	27	2.3	27	97	0	113	18	32	22	26	1.97
35426219--35426259	8	5.1	8	84	0	55	7	29	14	48	1.71
35426219--35426271	24	2.2	24	83	6	63	9	26	15	49	1.74
35433135--35433178	19	2.4	18	85	7	54	40	9	0	50	1.34
35435600--35435826	40	5.7	40	92	0	368	24	27	22	24	2.00
35438460--35438487	13	2.2	13	100	0	56	14	35	25	25	1.93
35439634--35439764	47	2.8	47	85	0	163	35	26	15	22	1.94
35443557--35443650	41	2.3	41	85	3	118	34	22	20	23	1.97
35446771--35446808	17	2.2	17	95	4	67	76	2	5	15	1.08
35448214--35448269	28	2.0	28	100	0	112	35	17	17	28	1.93
35448603--35448660	30	2.0	29	86	3	80	29	20	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35456601--35456722	22	5.3	22	62	21	61	25	29	11	33	1.91
35456573--35456876	47	6.4	47	90	4	416	27	30	9	32	1.88
35460308--35460365	30	2.0	29	96	3	107	31	25	17	25	1.97
35469439--35469500	27	2.3	27	88	5	90	33	24	22	19	1.97
35476201--35476327	28	4.5	28	86	0	137	28	11	28	32	1.91
35478168--35478245	26	3.1	26	65	20	74	25	12	29	32	1.93
35478112--35478257	50	2.9	51	85	2	177	26	13	28	32	1.94
35483138--35483222	43	2.0	42	97	2	161	35	9	12	42	1.76
35487361--35487391	16	1.9	16	93	0	53	16	3	25	54	1.56
35488101--35488156	26	2.2	26	93	0	94	14	35	35	14	1.86
35494037--35494192	39	4.1	39	80	9	164	37	16	30	15	1.90
35494040--35494189	77	2.0	74	83	8	187	36	17	30	15	1.91
35496478--35496700	40	5.6	39	80	7	216	25	21	27	25	1.99
35496558--35496735	79	2.2	80	82	3	200	25	21	28	24	1.99
35503971--35504193	40	5.6	39	80	7	216	25	21	27	25	1.99
35504051--35504228	79	2.2	80	82	3	200	25	21	28	24	1.99
35518943--35519035	44	2.1	44	97	0	177	29	3	11	55	1.51
35523231--35523317	23	3.8	23	66	14	63	22	25	17	34	1.96
35527712--35528002	50	5.8	50	83	2	327	25	17	26	30	1.97
35527768--35528002	98	2.4	97	85	2	317	25	18	26	29	1.98
35527716--35528002	148	1.9	149	86	2	407	25	17	26	31	1.97
35530858--35530955	40	2.5	40	84	0	124	25	18	17	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35530861--35530966	40	2.7	40	81	0	122	24	17	18	38	1.93
35530858--35530966	20	5.4	20	69	0	83	24	18	18	38	1.93
35530928--35531006	20	4.0	20	72	6	61	22	24	17	35	1.95
35530951--35531012	20	3.1	20	70	9	63	20	24	17	37	1.94
35535941--35536116	46	3.9	44	78	10	192	30	28	19	21	1.98
35535949--35536121	92	1.9	93	90	3	278	29	30	20	20	1.97
35539361--35539468	54	2.0	54	98	0	207	26	22	17	33	1.96
35543617--35543915	46	6.5	46	71	18	171	26	29	16	27	1.97
35546347--35546423	25	3.1	25	84	1	75	27	16	23	32	1.96
35546357--35546423	25	2.7	25	88	0	89	25	17	26	29	1.98
35546471--35546518	11	4.6	11	80	12	57	33	18	12	35	1.89
35554199--35554250	25	2.1	25	82	10	63	28	19	19	32	1.96
35554209--35554275	25	2.7	25	79	9	73	23	20	26	28	1.99
35554323--35554370	11	4.6	11	80	12	57	33	18	12	35	1.89
35559661--35559791	40	3.3	40	79	6	140	22	25	16	35	1.94
35562736--35562837	42	2.4	42	82	6	118	27	16	23	32	1.96
35564264--35564331	34	2.0	35	88	2	102	29	22	23	25	1.99
35570110--35570240	38	3.2	38	74	17	145	30	24	15	29	1.95
35570150--35570274	48	2.6	47	87	1	187	30	20	16	32	1.94
35571246--35571289	19	2.4	19	85	7	56	50	0	9	40	1.34
35573292--35573349	20	2.9	20	97	0	107	34	12	20	32	1.90
35573296--35573349	11	5.3	11	70	17	53	35	12	20	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35573399--35573543	24	6.0	24	89	5	204	28	22	21	26	1.99
35592471--35592596	50	2.6	50	80	2	139	32	26	16	23	1.96
35594282--35594364	34	2.5	34	92	5	136	30	6	27	36	1.81
35597587--35597632	24	1.9	24	100	0	92	58	2	0	39	1.10
35599521--35599991	234	2.0	234	96	0	870	36	9	21	32	1.85
35608364--35608534	93	1.8	93	89	2	272	30	27	19	22	1.98
35608359--35608529	46	3.7	45	77	13	186	30	26	19	23	1.98
35608407--35608550	46	3.1	43	73	15	112	30	27	18	22	1.98
35613597--35613957	46	7.6	49	76	8	290	26	18	30	24	1.98
35613824--35613955	47	2.8	46	81	10	149	25	18	28	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352