genome.fa.s11.2.7.7.80.10.50.1000.240.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  240  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79344247--79344367	27	4.5	27	88	0	161	42	8	19	29	1.80
79344222--79344351	54	2.4	54	87	1	172	41	8	20	30	1.81
79346419--79346527	37	2.9	37	90	0	155	27	29	19	23	1.98
79346676--79347075	48	8.1	48	85	8	536	31	25	6	37	1.80
79346679--79347068	98	3.9	98	92	4	581	31	25	6	36	1.81
79350998--79351330	80	4.2	80	94	0	558	29	29	19	22	1.98
79350972--79351330	40	9.0	40	85	0	475	28	28	19	22	1.98
79352584--79352692	37	2.9	37	91	0	173	27	30	19	22	1.98
79352844--79353234	48	7.9	50	87	7	564	30	24	6	38	1.81
79352844--79353234	98	3.9	98	91	3	597	30	24	6	38	1.81
79352844--79353249	50	8.2	50	87	7	551	30	24	6	38	1.81
79357344--79357407	31	2.1	31	87	0	92	23	23	14	39	1.91
79357601--79357766	24	7.0	23	84	6	201	27	21	21	29	1.99
79357601--79357766	47	3.5	47	85	7	212	27	21	21	29	1.99
79357602--79357766	71	2.3	71	87	6	228	27	21	21	29	1.99
79357816--79357882	20	3.3	20	93	0	116	32	20	11	34	1.90
79357816--79357871	11	5.5	11	71	16	57	32	19	12	35	1.89
79357919--79357966	25	1.9	25	86	0	69	25	16	25	33	1.96
79359126--79359189	27	2.4	27	79	7	69	20	23	18	37	1.94
79359147--79359198	27	1.9	28	84	7	72	17	21	23	38	1.93
79359220--79359483	27	9.7	27	79	7	214	31	9	18	40	1.82
79359305--79359525	27	8.2	27	82	6	139	32	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79359482--79359582	27	3.8	27	89	1	150	43	8	19	27	1.81
79359486--79359598	27	4.2	27	86	4	120	44	7	20	27	1.79
79359486--79359598	54	2.1	54	86	0	154	44	7	20	27	1.79
79364373--79364491	45	2.6	46	79	10	118	27	15	29	26	1.96
79364419--79364542	45	2.8	45	79	8	137	25	16	30	27	1.96
79368794--79369097	47	6.4	47	91	1	428	34	7	30	27	1.85
79371594--79371640	23	2.0	23	100	0	94	40	8	12	38	1.74
79376214--79376342	27	4.8	27	84	1	170	33	18	20	27	1.96
79376214--79376355	54	2.6	54	86	2	205	34	17	21	26	1.95
79376736--79376801	28	2.4	28	87	5	89	21	21	25	31	1.98
79380368--79380456	27	3.3	27	85	0	124	40	15	16	26	1.89
79380368--79380486	54	2.2	54	86	0	157	37	17	18	26	1.93
79380606--79380659	27	2.0	27	82	7	65	24	18	18	38	1.93
79393773--79393842	21	3.2	21	68	18	61	20	14	27	38	1.91
79397480--79398036	47	11.7	47	91	2	823	29	29	8	32	1.87
79397480--79398037	239	2.4	237	93	2	928	29	29	8	32	1.87
79403780--79403902	26	4.8	26	85	8	155	30	22	17	28	1.97
79403780--79403902	27	4.8	26	86	9	148	30	22	17	28	1.97
79404013--79404060	25	1.9	25	86	0	69	27	18	22	31	1.97
79404697--79404755	27	2.2	27	81	6	66	22	18	25	33	1.96
79404804--79405002	27	7.3	27	78	8	170	32	8	20	39	1.82
79404797--79404975	54	3.3	55	77	8	188	31	8	20	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79404777--79404975	54	3.7	54	76	6	172	30	9	21	39	1.84
79404953--79405082	27	4.9	27	86	5	174	43	8	19	29	1.80
79404953--79405079	53	2.4	53	88	4	175	43	8	18	29	1.80
79412857--79413052	40	4.9	40	89	5	281	25	28	22	23	2.00
79414794--79415013	39	5.7	40	85	7	251	25	22	27	25	2.00
79414883--79415046	79	2.1	78	82	7	190	26	21	27	25	1.99
79422692--79422913	40	5.7	40	85	8	246	25	22	27	24	2.00
79422782--79422946	79	2.1	79	83	6	201	26	21	27	24	1.99
79426059--79426272	106	2.0	107	99	0	421	44	26	9	20	1.81
79426581--79426656	38	2.0	38	97	0	143	22	26	9	42	1.83
79452944--79453168	40	5.6	40	96	0	405	19	20	29	31	1.97
79459743--79459849	40	2.7	40	97	0	196	20	21	28	29	1.98
79461610--79461657	22	2.2	22	96	0	87	47	18	10	22	1.79
79463628--79463699	36	2.0	36	100	0	144	55	11	13	19	1.68
79464930--79464969	20	2.0	20	90	0	62	50	2	15	32	1.57
79465478--79465502	2	12.5	2	100	0	50	52	0	0	48	1.00
79470788--79470860	31	2.3	29	76	15	74	45	1	1	52	1.18
79477265--79477401	46	3.0	46	89	0	202	25	31	8	34	1.86
79477375--79477710	47	7.1	47	91	2	474	26	30	11	31	1.91
79484208--79484267	27	2.3	26	85	2	75	35	20	23	21	1.96
79490628--79490841	40	5.3	40	83	5	161	27	27	21	23	1.99
79490607--79490839	80	2.9	80	82	3	265	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79498793--79499006	40	5.3	40	86	3	159	26	26	21	24	2.00
79498757--79499006	80	3.2	79	84	4	299	26	26	22	24	2.00
79509053--79509092	21	1.9	21	84	0	53	57	2	17	22	1.52
79522852--79523171	48	6.6	48	74	7	256	26	20	28	24	1.99
79522837--79523027	96	2.0	95	90	1	301	24	18	30	25	1.98
79522837--79523073	95	2.5	96	86	2	316	25	18	29	25	1.98
79522852--79523171	143	2.2	146	82	3	371	26	20	28	24	1.99
79534297--79534468	93	1.8	93	87	2	256	22	19	27	30	1.98
79536331--79536489	42	3.8	42	79	12	130	28	23	15	33	1.94
79561780--79561817	16	2.2	19	86	13	55	52	15	0	31	1.43
79563203--79563232	12	2.5	12	94	0	51	26	0	0	73	0.84
79570043--79570098	27	2.1	27	100	0	112	30	16	25	28	1.96
79576225--79576262	9	4.3	9	83	6	51	86	0	10	2	0.66
79576225--79576262	17	2.2	18	90	4	60	86	0	10	2	0.66
79591079--79591173	39	2.4	39	77	3	93	31	16	31	20	1.95
79604893--79604938	19	2.6	17	82	6	56	26	10	13	50	1.74
79604953--79604994	19	2.2	20	95	4	77	33	11	9	45	1.73
79605746--79605779	16	2.1	17	88	5	52	32	26	0	41	1.56
79606837--79606866	10	3.1	10	95	4	53	40	30	0	30	1.57
79627435--79627506	34	2.2	33	85	7	92	33	22	22	22	1.97
79632747--79632804	30	1.9	30	92	0	98	15	22	41	20	1.90
79639672--79639701	9	3.3	9	95	0	51	83	6	0	10	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79640025--79640164	49	2.9	49	73	6	122	26	20	23	29	1.99
79650396--79650468	20	3.3	20	67	26	58	24	30	24	20	1.99
79650386--79650605	46	4.8	46	80	9	241	29	27	20	21	1.98
79650439--79650610	93	1.8	93	91	0	281	29	27	20	22	1.98
79660712--79660737	13	2.0	13	100	0	52	15	30	38	15	1.88
79661097--79661128	14	2.4	13	90	10	55	18	6	12	62	1.50
79666895--79666947	28	2.0	28	85	7	74	13	24	11	50	1.73
79669717--79669941	49	4.6	49	80	9	230	28	18	27	24	1.98
79669708--79669927	98	2.3	95	83	6	280	28	18	28	25	1.98
79687746--79687899	43	3.6	43	81	1	157	31	22	14	31	1.94
79695223--79695301	39	2.0	39	97	0	149	51	5	24	18	1.66
79701071--79701130	27	2.2	27	82	5	77	38	10	10	41	1.72
79701086--79701343	27	9.6	27	83	5	310	31	10	20	37	1.87
79708046--79708262	48	4.6	47	86	3	276	27	18	25	28	1.98
79708046--79708227	93	1.9	94	91	1	294	28	18	25	27	1.98
79708215--79708305	42	2.2	42	82	7	105	27	18	23	30	1.98
79714617--79714791	46	3.8	45	80	7	208	28	28	21	21	1.99
79714625--79714796	93	1.8	93	93	0	299	27	29	21	21	1.99
79714622--79714811	46	4.1	44	71	16	125	28	27	21	22	1.99
79717259--79717519	48	5.4	48	90	1	389	29	18	24	27	1.98
79733145--79733179	6	5.8	6	100	0	70	51	0	0	48	1.00
79734917--79735280	47	7.8	44	70	13	185	28	20	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79734917--79735132	94	2.3	94	84	1	281	29	20	27	23	1.99
79734961--79735280	94	3.4	93	75	10	267	29	20	28	22	1.98
79742171--79742412	48	5.0	48	83	2	288	30	20	25	23	1.99
79742171--79742494	48	6.9	47	77	7	221	27	20	26	25	1.99
79746242--79746388	43	3.4	43	72	17	115	33	11	24	30	1.91
79751533--79751759	48	4.7	48	79	0	247	30	19	23	25	1.98
79751533--79751764	96	2.4	96	86	1	322	30	20	23	25	1.98
79751533--79751851	96	3.4	95	81	5	310	28	20	24	26	1.99
79751639--79751788	48	3.1	47	75	3	131	28	20	25	25	1.99
79755060--79755326	47	5.7	47	94	0	426	31	12	29	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352