genome.fa.s11.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  168  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55065163--55065249	43	2.0	44	88	2	131	21	19	21	36	1.95
55078107--55078149	19	2.1	21	87	8	63	62	4	4	27	1.35
55078790--55078814	9	2.8	9	100	0	50	20	0	0	80	0.72
55080247--55080289	20	2.2	20	100	0	86	53	4	9	32	1.53
55081217--55081281	32	2.0	32	90	0	103	24	20	15	40	1.91
55082364--55082402	20	1.9	21	89	5	62	10	23	43	23	1.84
55083262--55083443	92	2.0	93	88	1	276	25	25	20	29	1.99
55083835--55083879	18	2.5	18	88	0	63	22	13	28	35	1.92
55086925--55086984	31	1.9	31	83	6	77	40	11	8	40	1.72
55089588--55089799	48	4.4	48	76	9	175	36	24	18	20	1.95
55092389--55092426	20	1.9	20	88	0	58	26	7	21	44	1.79
55095494--55095739	131	1.9	132	92	0	413	32	17	23	27	1.96
55097703--55097751	25	2.0	25	84	4	64	63	8	0	28	1.23
55097715--55097760	25	1.9	23	86	8	65	63	8	0	28	1.24
55107369--55107410	19	2.2	19	91	0	66	69	2	0	28	1.01
55107376--55107424	10	5.0	10	82	5	55	63	2	2	32	1.17
55112861--55113553	127	5.5	125	82	5	687	27	15	18	37	1.92
55112861--55113499	257	2.5	252	82	6	743	28	15	18	37	1.92
55124674--55124800	64	2.0	64	95	3	229	30	17	15	36	1.91
55124907--55125553	134	4.9	134	76	10	534	29	19	22	29	1.98
55125171--55125553	89	4.4	88	78	10	426	27	20	21	30	1.98
55125301--55125433	45	3.0	45	86	2	187	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55125171--55125552	172	2.2	174	81	11	476	27	20	21	30	1.98
55126080--55126509	132	3.3	130	83	3	479	33	17	20	29	1.95
55129304--55129690	45	8.7	43	73	10	187	32	18	21	27	1.97
55129282--55129736	134	3.4	133	73	11	424	31	18	21	29	1.97
55131943--55132635	127	5.4	127	81	4	677	27	15	18	38	1.91
55131943--55132635	257	2.7	251	82	5	784	27	15	18	38	1.91
55133675--55133713	18	2.1	18	85	9	51	30	0	2	66	1.05
55133733--55133776	17	2.5	18	85	3	63	36	2	2	59	1.23
55133737--55133777	18	2.5	17	81	14	50	34	2	2	60	1.23
55133887--55133952	23	2.9	23	74	14	57	30	3	7	59	1.41
55134084--55134135	22	2.5	19	74	14	50	34	3	5	55	1.42
55134261--55134295	11	3.2	11	88	11	54	37	0	5	57	1.23
55146338--55146792	73	6.1	74	83	7	589	28	17	21	32	1.96
55146350--55146795	147	3.0	148	91	2	678	28	17	21	32	1.96
55147468--55147511	18	2.5	18	96	3	81	47	38	0	13	1.43
55147927--55147966	20	2.1	19	85	4	53	72	2	0	25	0.97
55148050--55148083	11	3.1	11	86	0	50	0	41	0	58	0.98
55148824--55148862	18	2.1	18	85	9	51	30	0	2	66	1.05
55149036--55149101	23	2.9	23	80	14	75	30	1	6	62	1.29
55150670--55150912	126	1.9	125	95	0	441	37	15	18	28	1.91
55151016--55151061	13	3.5	14	77	11	53	63	0	4	32	1.14
55151715--55151760	11	4.0	11	83	8	56	41	34	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55151710--55151759	23	2.1	23	85	10	66	40	34	0	26	1.56
55151723--55151769	12	3.9	12	83	8	60	38	40	0	21	1.53
55151739--55151775	12	3.1	12	92	0	56	35	48	0	16	1.46
55151826--55151863	18	2.2	18	95	4	69	23	0	52	23	1.47
55151844--55151918	37	2.0	37	94	0	132	18	2	52	26	1.59
55151889--55151947	29	2.0	29	83	6	75	18	1	47	32	1.59
55152160--55153268	133	8.3	133	91	1	1680	27	22	20	29	1.98
55152311--55152906	43	13.5	43	63	14	194	27	23	20	28	1.99
55154605--55154674	24	3.0	24	70	15	58	0	22	2	74	0.95
55154615--55154693	14	5.7	14	75	22	78	0	18	1	79	0.80
55154619--55154693	13	5.9	12	80	7	78	0	18	1	80	0.79
55154610--55154680	5	14.0	5	77	21	60	0	19	2	77	0.89
55154610--55154681	30	2.4	30	78	19	78	0	19	2	77	0.88
55154615--55154692	38	2.0	40	90	7	124	0	19	1	79	0.80
55154615--55154693	40	2.0	41	87	9	119	0	18	1	79	0.80
55157210--55157254	21	2.1	21	84	8	56	20	24	17	37	1.93
55160739--55160981	126	1.9	125	94	2	434	37	15	18	28	1.91
55161442--55161472	14	2.2	14	94	0	53	67	0	0	32	0.91
55161444--55161480	19	2.0	18	94	5	65	67	0	0	32	0.91
55161792--55161841	11	4.2	12	89	7	59	40	32	0	28	1.57
55161821--55161867	12	4.0	12	94	2	78	34	46	0	19	1.50
55161926--55161960	18	1.9	18	100	0	70	25	0	51	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55162033--55162061	7	4.1	7	100	0	58	13	0	0	86	0.58
55165644--55165891	43	5.8	42	82	2	253	31	28	18	21	1.97
55165672--55165891	85	2.6	85	81	7	266	31	28	18	21	1.97
55165644--55165874	128	1.8	127	82	2	302	30	28	18	22	1.97
55167826--55167864	7	5.6	7	84	0	51	33	46	0	20	1.51
55167854--55167983	61	2.1	62	91	2	208	46	23	0	29	1.57
55168147--55168180	14	2.4	14	100	0	68	44	38	0	17	1.49
55168436--55168479	20	2.3	19	80	7	52	61	4	6	27	1.41
55168486--55168790	41	7.7	41	83	6	382	27	29	21	20	1.98
55168620--55168685	33	2.0	33	91	5	107	22	28	27	21	1.99
55168580--55168726	74	2.0	73	90	1	231	25	31	24	19	1.98
55174042--55174213	93	1.8	93	95	2	310	28	29	20	20	1.98
55174035--55174210	46	3.8	46	79	14	209	29	29	20	20	1.98
55181086--55181257	93	1.8	93	92	2	292	29	28	19	22	1.98
55181080--55181254	46	3.8	45	75	14	169	30	28	19	21	1.98
55181130--55181273	46	3.1	44	71	16	123	29	26	19	24	1.98
55187505--55187549	18	2.5	18	92	0	72	26	37	15	20	1.92
55194975--55195108	49	2.7	52	81	9	170	26	17	32	23	1.97
55202808--55203030	39	5.7	40	84	8	257	26	21	27	24	2.00
55202808--55203030	79	2.8	80	84	9	280	26	21	27	24	2.00
55202808--55203063	79	3.3	79	81	10	217	26	21	27	24	1.99
55210774--55210996	39	5.7	40	85	8	266	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55210774--55210996	79	2.8	81	84	9	282	25	22	27	24	2.00
55210774--55211029	79	3.3	79	81	10	217	26	21	27	24	1.99
55213659--55213831	46	3.7	46	76	10	147	30	19	27	23	1.98
55213659--55213786	47	2.7	46	79	10	143	30	17	27	25	1.97
55213851--55213978	49	2.6	52	80	9	149	25	19	32	21	1.97
55215459--55215526	30	2.3	30	76	0	73	33	7	23	35	1.83
55218901--55218969	29	2.4	29	90	2	104	52	0	33	14	1.42
55219574--55219604	14	2.2	14	94	0	53	35	6	16	41	1.74
55238955--55238996	17	2.5	18	85	11	54	14	7	7	71	1.29
55240784--55241007	40	5.7	40	83	6	269	25	27	22	24	2.00
55240784--55241007	79	2.8	79	83	6	265	25	27	22	24	2.00
55242137--55242256	56	2.1	56	98	0	231	22	23	9	45	1.81
55248699--55248867	76	2.2	80	88	4	247	26	28	20	24	1.99
55248701--55248913	116	1.8	118	83	8	283	25	27	21	25	1.99
55248680--55248920	40	6.1	40	81	9	264	25	27	21	25	1.99
55250044--55250163	56	2.1	56	98	0	231	22	23	9	45	1.81
55252297--55252925	94	6.7	91	78	7	450	28	19	16	35	1.94
55252304--55252927	188	3.3	185	78	8	532	28	19	16	35	1.94
55252515--55252926	50	8.9	44	66	17	174	28	20	16	34	1.94
55253184--55253210	13	2.1	13	100	0	54	25	14	7	51	1.68
55254292--55254420	64	2.0	64	80	0	141	23	18	20	37	1.94
55265648--55265715	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55265817--55265895	29	2.7	30	82	13	110	29	30	15	25	1.96
55274484--55274592	49	2.3	47	93	4	182	32	7	30	30	1.85
55274710--55274788	37	2.1	37	88	0	113	25	18	31	24	1.98
55291629--55291713	35	2.4	35	81	14	104	34	30	0	35	1.58
55291629--55291719	37	2.6	35	86	10	116	31	32	0	35	1.58
55291889--55291944	27	2.1	27	93	0	94	28	14	17	39	1.89
55292467--55292525	29	2.0	29	100	0	118	44	6	10	38	1.65
55295938--55295972	9	3.9	9	96	0	61	42	0	2	54	1.15
55304121--55304274	42	3.7	42	78	5	150	29	16	24	29	1.97
55309030--55309182	42	3.7	41	72	5	110	26	27	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352