genome.fa.s11.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  112  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35877381--35877438	27	2.2	26	84	3	71	34	20	24	20	1.97
35877408--35877540	67	1.9	67	86	6	185	31	21	26	20	1.98
35878155--35878460	27	11.3	27	86	1	425	24	19	18	36	1.95
35878155--35878521	27	13.6	27	86	0	414	25	17	19	37	1.94
35878155--35878494	54	6.3	54	89	1	486	25	18	19	37	1.94
35878449--35878550	27	3.8	27	89	2	143	26	8	23	41	1.83
35878481--35878566	27	3.2	27	83	3	75	27	6	22	43	1.79
35887155--35887179	12	2.1	12	100	0	50	52	32	8	8	1.60
35889397--35889434	15	2.5	15	100	0	76	18	18	7	55	1.66
35890628--35890845	47	4.7	48	71	14	161	28	18	28	24	1.98
35890674--35890842	92	1.8	93	85	8	238	28	17	28	24	1.98
35915654--35915694	19	2.2	19	86	4	57	70	4	2	21	1.18
35915620--35915693	31	2.4	31	78	13	82	66	4	2	27	1.23
35917491--35917679	101	1.9	101	95	0	342	46	12	7	34	1.69
35920608--35920655	7	6.9	7	80	0	51	45	33	2	18	1.61
35920609--35920655	14	3.4	14	78	0	58	46	31	2	19	1.61
35920812--35920862	14	3.6	14	76	7	59	37	45	0	17	1.49
35920812--35920865	21	2.6	21	77	16	58	37	46	0	16	1.48
35921160--35921215	24	2.3	24	80	20	71	48	0	41	10	1.38
35921389--35921693	41	7.4	41	89	0	430	22	23	22	32	1.98
35922434--35922519	43	2.0	43	90	0	136	30	25	17	26	1.97
35926519--35926544	12	2.2	12	100	0	52	30	26	7	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35928331--35928628	9	34.0	9	73	14	153	33	1	16	49	1.52
35928317--35928472	63	2.5	61	87	4	222	35	0	17	46	1.54
35928339--35928635	52	5.7	52	86	6	395	33	1	15	49	1.54
35928788--35928853	30	2.2	30	83	5	80	53	3	4	39	1.37
35928811--35928866	15	3.7	15	72	25	55	51	1	0	46	1.11
35928814--35928893	30	2.7	30	81	9	76	53	5	0	41	1.22
35929104--35929150	24	2.0	24	91	0	76	42	6	21	29	1.77
35936733--35936853	43	2.9	42	80	11	156	30	16	24	28	1.97
35938952--35939042	42	2.2	42	87	0	128	25	25	18	30	1.98
35946150--35946258	37	2.9	37	97	0	200	27	31	19	22	1.97
35946404--35946636	48	4.8	48	91	3	360	30	27	6	36	1.81
35946606--35946752	47	3.1	47	85	0	195	27	29	10	32	1.90
35951465--35951497	15	2.1	16	88	5	50	63	12	0	24	1.28
35953821--35953869	15	3.4	15	72	11	57	44	36	8	10	1.68
35953814--35953869	28	2.0	28	100	0	112	42	35	10	10	1.74
35957216--35957259	22	2.0	22	82	8	54	59	2	2	36	1.23
35961174--35961378	27	7.6	27	86	3	259	26	15	27	30	1.96
35961175--35961378	109	1.9	108	89	3	320	26	15	27	30	1.96
35969203--35969407	27	7.6	27	86	3	259	26	15	27	30	1.96
35969204--35969407	109	1.9	108	89	3	320	26	15	27	30	1.96
35976236--35976317	40	2.0	40	100	0	164	40	23	4	31	1.76
35980216--35980375	84	1.9	84	81	7	191	31	25	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35987355--35987385	16	1.9	16	93	0	53	35	22	0	41	1.54
35987598--35987821	50	4.5	50	91	0	367	28	27	16	26	1.97
35991844--35991880	18	2.1	18	90	10	58	64	5	0	29	1.15
35992053--35992128	29	2.6	28	79	8	89	61	0	3	34	1.14
35992045--35992134	21	4.6	20	73	13	71	62	0	4	33	1.15
35993856--35994096	44	5.5	45	82	5	255	29	26	12	31	1.93
35994075--35994119	23	2.0	23	100	0	90	33	26	8	31	1.87
35994030--35994159	67	1.9	67	88	0	197	29	26	11	33	1.91
35994098--35994218	44	2.7	45	85	3	174	28	27	14	29	1.95
35993987--35994207	111	2.0	111	85	0	298	29	25	11	32	1.92
35993943--35994234	155	1.9	155	85	1	406	29	26	12	31	1.92
36006029--36006065	18	2.1	18	90	10	58	64	5	0	29	1.15
36006217--36006293	29	2.6	28	80	8	91	62	0	3	33	1.14
36006209--36006293	21	4.3	20	72	12	70	62	0	3	34	1.12
36009628--36009782	43	3.7	43	72	6	154	26	18	25	29	1.98
36011070--36011100	15	2.1	15	100	0	62	38	9	38	12	1.77
36042497--36042634	43	3.3	42	79	8	147	28	23	19	28	1.98
36042510--36042635	41	3.0	42	79	6	139	30	23	19	26	1.98
36045848--36046164	48	6.6	48	83	2	363	25	17	29	28	1.97
36045853--36046164	96	3.2	96	84	1	403	25	16	29	28	1.97
36045852--36046167	144	2.2	144	86	4	433	26	16	29	28	1.97
36052730--36052776	14	3.5	15	71	28	52	55	6	17	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36052719--36052776	25	2.3	25	96	0	107	56	8	15	18	1.64
36057679--36057750	24	3.0	24	83	0	81	38	13	22	25	1.91
36064165--36064280	52	2.2	52	90	0	178	33	14	24	27	1.94
36064165--36064280	24	4.4	27	77	15	118	33	14	24	27	1.94
36064169--36064260	24	3.7	24	83	11	121	38	16	21	23	1.93
36064305--36064499	51	3.8	51	91	1	302	31	12	25	29	1.93
36069426--36069605	87	2.1	87	96	0	333	49	14	7	28	1.71
36070761--36070806	23	2.0	22	91	4	74	17	23	13	45	1.83
36078083--36078201	29	4.2	29	77	8	120	26	32	13	26	1.94
36078437--36078475	8	4.9	8	87	0	60	10	25	23	41	1.86
36078429--36078479	24	2.1	24	92	0	84	11	23	17	47	1.81
36078419--36078472	16	3.4	16	86	0	72	14	25	14	44	1.84
36084826--36084878	26	2.0	26	96	0	97	15	13	18	52	1.74
36087950--36088087	49	2.9	48	81	3	152	25	17	32	24	1.97
36087960--36088087	48	2.6	48	80	1	139	25	16	33	25	1.96
36090786--36090985	108	1.8	110	84	4	280	34	15	25	25	1.95
36098332--36098586	55	4.8	54	81	9	287	36	17	25	21	1.95
36098339--36098588	108	2.4	110	83	9	331	35	17	25	22	1.95
36098778--36098808	16	1.9	16	93	0	53	41	0	22	35	1.54
36105440--36105714	24	11.5	24	74	9	193	37	26	11	25	1.90
36105382--36105617	72	3.3	72	76	5	172	36	26	12	25	1.91
36105412--36105713	96	3.1	96	90	1	471	36	25	11	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36105410--36105714	48	6.4	48	74	0	268	36	26	11	25	1.90
36114014--36114096	39	2.2	37	83	12	107	37	38	10	13	1.79
36122370--36122466	48	2.0	48	95	0	176	46	10	8	35	1.68
36134905--36135051	40	3.7	40	83	5	120	25	27	21	25	2.00
36134951--36135131	80	2.3	80	83	9	219	27	27	20	23	1.99
36134948--36135131	40	4.6	40	81	7	196	28	27	20	23	1.99
36141826--36141972	40	3.7	40	83	5	120	25	27	21	25	2.00
36141872--36142052	80	2.3	80	83	9	219	27	27	20	23	1.99
36141869--36142052	40	4.6	40	81	7	196	28	27	20	23	1.99
36157907--36157932	6	4.3	6	100	0	52	30	0	69	0	0.89
36165907--36165966	27	2.3	27	79	2	68	41	18	21	18	1.90
36166105--36166411	27	11.4	27	85	0	355	24	19	20	35	1.96
36181752--36181851	24	4.0	24	83	6	119	20	39	5	36	1.74
36195571--36195694	17	6.8	18	86	5	162	37	14	10	37	1.81
36195571--36195686	35	3.2	35	92	3	187	37	13	11	37	1.81
36195813--36195852	21	2.0	20	85	5	53	10	2	15	72	1.21
36196090--36197213	207	5.4	207	93	0	1863	29	22	18	29	1.97
36197434--36197575	44	3.3	44	70	9	148	26	20	22	30	1.98
36197220--36197585	85	4.3	85	84	7	514	24	21	23	31	1.98
36197220--36197585	167	2.2	166	88	6	524	24	21	23	31	1.98
36197393--36197531	41	3.3	41	68	13	111	23	20	24	32	1.98
36198533--36198592	8	7.1	8	85	10	68	3	13	3	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36198533--36198582	18	2.8	18	81	18	61	4	12	4	80	1.00
36198547--36198582	10	3.8	10	92	7	58	5	11	5	77	1.10
36198945--36199024	40	2.0	40	95	4	144	30	17	17	35	1.93
36204370--36204476	18	5.8	19	85	8	159	38	14	11	36	1.81
36204370--36204476	35	2.9	36	90	6	162	38	14	11	36	1.81
36219671--36219828	68	2.3	68	77	13	153	20	27	15	35	1.94
36232362--36232429	30	2.3	30	92	0	109	23	30	30	14	1.94
36241556--36241594	20	1.9	21	89	5	62	17	2	5	74	1.12
36241579--36241604	9	2.9	9	100	0	52	11	0	0	88	0.52
36242371--36242416	21	2.2	21	88	0	65	13	36	28	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352