Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  328  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106002089--106002145
29
2.0
29
100
0
114
35
31
15
17
1.92
106002118--106002220
43
2.4
42
80
6
107
34
27
13
24
1.93
106002051--106002191
72
2.0
72
86
0
201
31
26
15
25
1.96
106006487--106006576
7
12.1
8
87
8
86
32
0
1
66
0.99
106006482--106006576
15
6.5
15
82
3
104
34
0
1
64
1.01
106006487--106006593
52
2.0
52
87
8
153
29
0
2
67
1.05
106007169--106007232
7
9.0
7
75
3
56
46
26
3
23
1.67
106007166--106007216
15
3.5
15
78
5
59
47
29
1
21
1.62
106007345--106007416
37
1.9
37
82
0
90
22
0
31
45
1.52
106007454--106007943
41
12.0
41
90
1
698
21
27
20
30
1.98
106015288--106015314
14
1.9
14
100
0
54
70
0
0
29
0.88
106015339--106015384
10
4.4
10
81
8
56
39
6
2
52
1.40
106017979--106018008
12
2.5
12
100
0
60
0
23
50
26
1.50
106019077--106019200
30
4.1
30
89
1
176
44
6
21
27
1.77
106019129--106019178
15
3.3
15
78
10
66
46
8
18
28
1.77
106023774--106023881
15
7.2
15
67
12
78
44
7
22
25
1.79
106023768--106023891
30
4.1
30
93
1
203
43
6
24
25
1.78
106036347--106036391
20
2.3
20
92
3
74
37
0
15
46
1.46
106036918--106037295
126
3.0
126
85
3
512
34
17
18
28
1.94
106039303--106039359
26
2.3
25
79
14
64
61
1
7
29
1.32
106041124--106041629
206
2.5
206
94
0
870
28
20
17
32
1.96
106041622--106041714
44
2.1
44
88
4
134
24
27
16
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106051564--106052157
44
13.5
44
90
1
870
25
32
14
26
1.95
106052143--106052725
132
4.4
132
91
1
911
26
23
19
30
1.98
106052232--106052700
45
10.6
45
64
10
171
25
23
19
30
1.98
106056518--106056573
5
11.6
5
78
21
66
41
16
21
21
1.90
106056523--106056579
19
3.0
19
97
0
105
42
14
21
22
1.88
106056508--106056557
24
2.1
24
100
0
100
44
16
20
20
1.87
106056508--106056595
24
3.9
24
78
17
80
43
13
21
21
1.87
106058109--106058554
131
3.4
131
74
8
352
38
15
17
28
1.90
106063416--106063485
36
1.9
36
100
0
140
28
14
18
38
1.90
106066487--106066536
15
3.5
15
82
15
61
42
10
24
24
1.85
106074482--106074529
26
1.9
24
83
8
60
64
0
8
27
1.22
106078968--106079010
18
2.4
18
88
0
59
44
9
25
20
1.81
106080596--106080732
49
2.8
48
75
14
138
53
4
8
33
1.52
106080877--106080907
11
2.9
11
95
4
55
35
0
16
48
1.46
106091984--106092017
18
1.9
18
88
5
52
17
8
11
61
1.54
106092250--106092285
16
2.2
17
90
5
56
25
2
0
72
0.98
106093831--106093901
22
3.4
22
67
21
71
39
2
1
56
1.23
106093815--106093896
40
2.0
40
100
0
164
39
2
2
56
1.26
106100590--106100617
5
5.6
5
100
0
56
17
0
0
82
0.68
106105037--106105078
5
8.6
5
94
5
77
19
0
0
80
0.70
106105037--106105078
14
2.9
15
96
3
77
19
0
0
80
0.70
106105804--106105847
22
2.0
22
90
0
70
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106105872--106105902
15
2.0
16
93
6
55
61
0
0
38
0.96
106105940--106105996
15
3.5
15
71
17
51
49
1
1
47
1.22
106120602--106120626
7
3.6
7
100
0
50
60
0
0
40
0.97
106132769--106132816
3
16.3
3
89
4
62
60
2
37
0
1.09
106135683--106135754
32
2.3
31
83
7
83
56
4
2
36
1.33
106135778--106135816
8
4.8
8
87
3
51
71
2
0
25
0.98
106135778--106135823
16
2.9
16
83
6
58
71
2
0
26
0.97
106135851--106135907
25
2.3
23
82
8
60
61
1
7
29
1.32
106137661--106137819
83
1.9
83
89
0
246
30
18
17
33
1.95
106137605--106138307
288
2.4
289
94
1
1248
30
21
17
31
1.96
106141652--106141706
9
6.8
8
86
12
51
81
1
0
16
0.77
106141652--106141705
16
3.3
16
86
2
72
83
1
0
14
0.73
106141652--106141705
25
2.2
25
89
0
81
83
1
0
14
0.73
106142664--106142698
18
1.9
18
88
0
52
34
0
5
60
1.21
106147411--106147440
11
2.7
11
100
0
60
13
20
0
66
1.24
106153119--106153229
34
3.2
33
77
10
98
55
2
5
36
1.37
106153290--106153348
23
2.5
23
82
15
68
64
3
3
28
1.26
106153628--106153655
11
2.5
11
100
0
56
71
0
7
21
1.09
106157970--106158104
39
3.4
39
75
12
139
29
27
6
36
1.82
106160685--106160752
34
2.0
34
100
0
136
29
11
17
41
1.85
106162419--106162444
13
2.0
13
100
0
52
30
30
15
23
1.95
106163113--106163654
68
8.0
68
88
1
771
25
22
22
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106163110--106163646
203
2.6
204
89
1
788
25
22
22
29
1.99
106170886--106170910
6
4.2
6
100
0
50
48
16
36
0
1.46
106170915--106170960
3
15.3
3
100
0
92
67
0
32
0
0.91
106172131--106172156
13
2.0
13
100
0
52
30
30
15
23
1.95
106172825--106173366
68
8.0
68
88
1
789
25
22
22
28
1.99
106172822--106173358
203
2.6
204
90
1
806
25
22
22
28
1.99
106184247--106184280
16
2.1
17
88
5
52
23
5
11
58
1.55
106189936--106189968
16
1.9
18
88
11
52
57
9
12
21
1.62
106190022--106190133
12
9.6
12
71
14
58
59
2
4
33
1.31
106190138--106190199
27
2.3
26
91
2
97
56
1
4
37
1.30
106190324--106190379
25
2.2
25
87
0
76
53
7
7
32
1.55
106190362--106190422
26
2.3
27
77
5
63
60
6
3
29
1.38
106190453--106190479
14
1.9
14
100
0
54
59
0
0
40
0.98
106190611--106190671
31
1.9
32
83
9
81
62
0
4
32
1.17
106196081--106196139
30
2.0
29
83
6
73
25
35
0
38
1.56
106198702--106198740
21
1.9
20
84
5
51
33
5
5
56
1.43
106199167--106199211
21
2.1
21
88
8
65
24
17
2
55
1.53
106206519--106206612
46
2.0
46
100
0
188
36
13
17
32
1.89
106206970--106207135
38
4.3
38
96
1
296
32
25
20
21
1.98
106214238--106214278
21
2.0
21
90
0
64
29
21
29
19
1.98
106216182--106216215
16
2.1
16
88
0
50
50
14
17
17
1.79
106219033--106219070
18
2.1
18
95
0
67
39
10
2
47
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106223525--106223579
24
2.5
21
81
16
74
34
21
3
40
1.71
106223529--106223575
24
2.0
24
95
0
85
34
19
4
42
1.70
106227732--106227785
24
2.2
26
83
16
78
35
1
0
62
1.06
106227735--106227794
25
2.4
26
83
13
81
38
1
0
60
1.07
106230168--106230275
53
2.0
54
98
1
209
40
3
9
46
1.54
106230175--106230260
28
3.1
29
64
20
76
41
3
11
43
1.58
106230188--106230271
25
3.2
25
65
19
64
44
3
7
45
1.48
106231292--106231399
51
2.1
52
84
1
137
40
6
22
30
1.79
106233530--106233590
30
2.0
30
96
0
113
50
14
3
31
1.59
106233643--106233680
19
2.0
19
90
10
60
50
5
5
39
1.48
106241876--106242079
27
7.6
27
86
2
232
42
21
16
20
1.89
106241876--106242094
53
4.1
52
85
4
240
42
19
16
21
1.89
106241876--106242068
80
2.4
80
84
5
230
43
20
16
19
1.88
106242084--106242193
54
2.0
54
82
3
132
25
14
22
37
1.92
106241912--106242168
27
9.6
27
81
7
139
36
17
19
26
1.94
106242538--106242574
18
2.1
18
100
0
74
18
21
16
43
1.88
106243838--106243875
19
2.0
19
85
10
51
76
0
2
21
0.91
106243996--106244046
21
2.5
21
81
12
63
60
1
7
29
1.36
106245898--106246109
83
2.5
84
85
4
302
27
19
17
34
1.95
106246029--106246502
119
4.0
119
92
0
743
31
19
15
32
1.93
106258022--106258069
25
1.9
25
86
0
69
35
22
14
27
1.93
106258106--106258192
20
4.3
20
88
2
122
35
12
18
33
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106258137--106258192
11
5.5
11
71
16
57
35
14
19
30
1.91
106258242--106258300
25
2.4
26
78
18
72
30
23
22
23
1.99
106258509--106258622
31
3.8
31
89
2
153
31
17
27
23
1.97
106265980--106266027
25
1.9
25
86
0
69
35
22
14
27
1.93
106266074--106266143
11
7.0
10
71
18
56
32
11
21
34
1.89
106266064--106266150
20
4.3
20
86
2
122
34
11
20
33
1.89
106266466--106266579
31
3.8
31
90
2
162
30
17
28
23
1.97
106270631--106270738
29
3.7
29
83
0
126
27
27
24
20
1.99
106270631--106270758
58
2.2
58
84
0
157
29
25
24
20
1.99
106273853--106273952
17
6.1
17
72
16
86
32
2
3
63
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352