genome.fa.s11.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  163  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53361424--53361651	100	2.3	98	83	4	287	29	25	18	25	1.98
53363060--53363085	11	2.4	11	100	0	52	15	26	0	57	1.38
53366417--53366641	49	4.5	50	80	4	258	29	26	18	25	1.98
53366417--53366648	101	2.3	98	86	4	313	29	26	18	25	1.98
53379731--53379919	54	3.4	54	73	15	204	24	18	24	32	1.97
53379673--53379864	59	3.3	59	73	15	229	26	17	24	31	1.97
53379673--53379918	113	2.2	113	98	0	474	25	17	24	32	1.97
53391797--53391826	15	2.0	15	100	0	60	20	26	26	26	1.99
53402101--53402149	17	2.9	17	75	22	50	75	0	8	16	1.03
53403693--53403815	44	2.8	44	83	0	147	30	14	19	34	1.92
53403743--53403839	44	2.2	44	77	0	104	36	14	20	28	1.92
53403902--53404302	45	8.8	45	73	8	310	27	23	18	29	1.98
53403822--53404256	188	2.3	185	79	4	419	28	22	19	29	1.98
53404123--53404295	89	1.9	89	88	0	256	24	24	20	30	1.99
53410541--53410577	18	2.1	18	100	0	74	40	10	21	27	1.86
53423998--53424022	13	1.9	13	100	0	50	32	16	16	36	1.90
53425537--53426035	47	10.6	47	92	2	813	33	8	28	29	1.86
53425537--53426035	190	2.6	190	94	0	849	33	8	28	29	1.86
53428843--53428899	3	19.0	3	80	7	53	63	8	1	26	1.34
53430313--53430358	21	2.1	23	88	8	69	19	2	28	50	1.60
53436774--53436975	76	2.7	75	79	3	188	30	20	21	27	1.98
53436828--53437063	76	3.1	76	80	3	235	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53440478--53440780	150	2.0	150	99	0	597	37	14	10	37	1.80
53455420--53455632	76	2.8	76	83	1	266	28	19	24	27	1.99
53465013--53465051	20	1.9	21	85	15	55	56	12	2	28	1.50
53470730--53471348	47	13.1	47	93	1	1004	32	9	29	28	1.88
53470730--53471348	143	4.4	141	93	1	1040	32	9	29	28	1.88
53470730--53471296	190	3.0	190	95	2	1030	32	8	29	29	1.87
53471467--53471545	37	2.1	37	86	4	106	26	18	30	24	1.98
53479227--53479269	22	2.0	22	81	9	52	30	0	4	65	1.13
53493154--53493200	23	2.0	23	91	0	76	38	0	2	59	1.09
53493232--53493299	26	2.5	26	78	17	68	33	5	4	55	1.44
53500830--53500867	20	1.9	20	89	10	60	13	10	7	68	1.39
53502470--53502538	31	2.2	31	92	0	111	13	23	40	23	1.89
53502997--53503030	13	2.5	14	85	9	52	17	17	17	47	1.84
53511722--53511926	27	7.6	27	86	3	259	30	27	15	26	1.96
53519684--53519888	27	7.6	27	86	3	259	30	27	15	26	1.96
53527508--53527534	2	13.5	2	100	0	54	0	0	51	48	1.00
53532179--53532365	48	3.9	48	84	4	241	25	28	18	27	1.98
53532188--53532365	96	1.8	98	87	4	272	24	28	17	28	1.98
53549496--53549548	18	3.0	18	86	2	72	18	28	37	15	1.91
53549989--53550070	41	2.0	41	82	0	101	29	18	21	30	1.97
53552269--53552329	30	2.0	30	96	0	113	31	24	8	36	1.85
53557473--53557515	22	2.0	22	85	0	59	58	6	4	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53557741--53557790	24	2.2	24	85	7	68	60	6	10	24	1.51
53558721--53558797	27	2.9	27	80	7	68	76	3	11	7	1.13
53559321--53559358	18	2.1	18	90	0	58	39	10	0	50	1.37
53566623--53566657	2	17.5	2	100	0	70	51	0	0	48	1.00
53566769--53566828	31	1.9	31	100	0	120	30	6	3	60	1.39
53567690--53567728	19	2.1	19	85	9	53	64	2	0	33	1.08
53567692--53567774	27	3.1	27	74	6	80	62	2	0	34	1.08
53571529--53571562	18	1.9	18	88	5	52	38	0	2	58	1.13
53575374--53575458	43	2.0	43	90	0	134	32	22	22	22	1.98
53575459--53575540	43	1.9	43	92	0	137	24	15	25	34	1.95
53579910--53579962	25	2.1	25	100	0	106	35	15	11	37	1.83
53583703--53584394	47	14.6	47	93	1	1114	32	8	29	29	1.86
53583703--53584394	96	7.3	96	92	3	1125	32	8	29	29	1.86
53583703--53584394	143	4.9	142	94	1	1127	32	8	29	29	1.86
53594916--53595142	91	2.5	91	88	0	319	21	25	15	37	1.93
53594870--53595142	46	6.0	46	89	1	325	20	24	15	38	1.92
53603467--53603504	18	2.2	18	85	4	51	13	23	44	18	1.85
53617133--53617224	35	2.6	35	75	13	91	44	22	7	25	1.79
53618346--53618378	17	2.0	16	94	5	57	6	15	6	72	1.24
53624844--53624974	35	3.8	35	74	10	92	44	20	8	26	1.80
53631178--53631209	5	6.6	5	92	7	57	18	0	0	81	0.70
53631178--53631208	14	2.2	14	100	0	62	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53633538--53633654	27	4.3	27	83	0	153	35	20	19	23	1.95
53633791--53633891	27	3.8	27	80	1	105	20	20	22	35	1.96
53634055--53634119	32	2.0	33	87	3	96	23	23	29	24	1.99
53637481--53637558	9	8.7	9	80	5	86	41	20	11	26	1.87
53637586--53637632	6	7.5	6	86	9	67	19	0	2	78	0.85
53637597--53637640	20	2.1	21	91	4	72	27	0	2	70	0.99
53637564--53637655	32	2.9	31	72	20	84	28	0	3	68	1.05
53639456--53639517	6	9.8	6	76	10	61	62	1	3	32	1.20
53639456--53639517	13	4.9	12	76	9	61	62	1	3	32	1.20
53639454--53639491	18	2.1	19	95	5	69	65	5	0	28	1.14
53651390--53651444	28	2.0	28	96	0	101	29	38	14	18	1.90
53653160--53653338	28	6.4	28	94	0	288	26	12	27	32	1.93
53659839--53659874	5	7.4	5	93	6	65	41	0	0	58	0.98
53659839--53659888	15	3.4	14	86	13	66	42	0	2	56	1.11
53659838--53659903	20	3.3	20	80	20	68	39	0	4	56	1.20
53660352--53660400	26	2.0	25	84	15	66	51	0	4	44	1.20
53661497--53661603	45	2.4	45	88	3	153	21	17	19	41	1.91
53669167--53669329	84	1.9	84	88	0	245	23	26	22	27	2.00
53672853--53673036	67	2.8	64	77	8	203	29	16	29	23	1.96
53679033--53679196	42	3.9	42	82	4	204	31	15	23	30	1.95
53679033--53679192	85	1.9	84	84	3	214	31	15	23	30	1.95
53679042--53679215	85	2.1	84	81	1	195	30	14	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53688770--53689003	48	4.8	48	82	2	263	23	27	20	27	1.99
53699965--53700020	29	1.9	29	96	0	103	57	7	21	14	1.61
53701562--53701594	17	1.9	17	100	0	66	39	0	12	48	1.40
53702610--53702734	40	3.1	40	83	2	144	18	21	20	39	1.93
53702673--53702769	40	2.4	40	80	0	104	22	20	20	36	1.96
53709965--53710015	26	1.9	27	88	4	77	29	5	0	64	1.17
53712439--53712482	19	2.2	20	88	11	65	31	0	6	61	1.22
53715984--53716049	33	2.0	33	87	3	96	9	19	6	65	1.42
53717181--53717212	14	2.3	14	94	0	55	81	0	9	9	0.88
53734224--53734292	27	2.6	27	85	0	75	30	11	27	30	1.92
53741768--53741797	13	2.3	13	94	0	51	26	10	6	56	1.57
53743927--53743988	24	2.5	25	84	5	81	19	25	19	35	1.95
53744587--53744638	25	2.0	26	92	3	88	34	3	17	44	1.67
53744590--53744649	25	2.3	26	82	5	77	36	6	13	43	1.70
53747310--53747349	19	2.2	18	86	4	53	67	0	5	27	1.11
53747412--53747443	16	1.9	17	93	6	57	68	3	0	28	1.04
53747412--53747444	17	1.9	17	93	0	57	69	3	0	27	1.03
53748493--53748535	20	2.2	19	84	12	52	53	2	2	41	1.26
53753280--53753534	55	4.8	53	77	9	236	36	16	24	21	1.94
53753726--53753756	16	1.9	16	93	0	53	41	0	22	35	1.54
53759213--53759419	54	3.8	53	77	6	195	22	25	15	36	1.94
53759213--53759412	107	1.9	109	85	4	280	23	25	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53762626--53762704	37	2.2	37	95	2	142	27	13	7	50	1.69
53765698--53765881	67	2.8	64	76	8	185	29	16	29	23	1.96
53769331--53769375	15	3.3	14	82	14	58	68	0	2	28	1.01
53771148--53771543	177	2.2	177	93	0	668	28	22	19	29	1.98
53783525--53783565	18	2.2	19	86	4	57	65	0	4	29	1.13
53783516--53783560	15	3.3	14	82	14	58	68	0	2	28	1.01
53783506--53783565	15	3.5	18	77	13	56	68	1	3	26	1.15
53784404--53784454	26	2.0	27	84	7	70	27	11	9	50	1.70
53787693--53787732	21	1.9	21	84	0	53	42	20	5	32	1.73
53789825--53789854	5	6.0	5	100	0	60	80	0	0	20	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352