genome.fa.s11.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  142  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46339688--46339752	3	21.3	3	75	9	60	63	6	0	30	1.19
46340214--46340249	18	2.0	18	88	0	54	55	0	44	0	0.99
46340219--46340264	11	4.2	11	88	5	67	47	0	52	0	1.00
46340342--46340380	15	2.5	16	91	4	62	12	2	2	82	0.89
46340337--46340390	7	7.1	7	82	12	54	16	3	3	75	1.08
46340337--46340382	15	3.1	15	79	14	51	15	4	2	78	1.01
46341839--46342411	76	7.8	74	85	6	636	33	20	16	29	1.95
46341839--46342645	155	5.4	145	78	12	630	33	20	16	29	1.95
46342158--46342412	65	3.7	66	86	8	314	31	21	14	31	1.94
46342275--46342657	73	5.1	74	84	5	398	33	20	15	30	1.94
46343669--46343724	1	56.0	1	78	0	58	0	5	5	89	0.60
46343669--46343722	15	3.8	14	87	4	65	0	5	5	88	0.61
46351025--46351180	82	1.9	81	85	3	215	26	16	28	28	1.97
46351024--46351177	55	2.9	52	82	7	175	27	16	27	27	1.97
46351025--46351180	27	5.7	27	81	6	163	26	16	28	28	1.97
46351017--46351201	27	6.8	27	75	9	101	26	16	28	29	1.97
46351017--46351201	82	2.3	81	78	2	210	26	16	28	29	1.97
46359103--46359258	82	1.9	81	85	3	215	26	16	28	28	1.97
46359102--46359255	55	2.9	52	82	7	175	27	16	27	27	1.97
46359103--46359258	27	5.7	27	81	6	163	26	16	28	28	1.97
46359095--46359279	27	6.8	27	75	9	101	26	16	28	29	1.97
46359095--46359279	82	2.3	81	78	2	210	26	16	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46363472--46363545	36	2.1	36	86	0	103	43	16	16	24	1.87
46364701--46364794	31	3.0	31	98	0	179	46	11	19	22	1.81
46369690--46369908	40	5.5	40	93	2	372	26	27	22	22	1.99
46369690--46369908	79	2.8	80	92	3	372	26	27	22	22	1.99
46372099--46372190	27	3.4	27	83	5	107	31	14	18	35	1.90
46372097--46372230	54	2.5	54	81	0	142	31	17	17	34	1.93
46374156--46374244	27	3.3	27	83	0	106	28	13	20	38	1.90
46374156--46374287	54	2.4	54	82	2	140	26	16	19	37	1.93
46374181--46374286	27	3.9	27	74	9	108	26	18	18	35	1.95
46385816--46385914	48	2.0	49	96	1	182	36	18	15	30	1.91
46388245--46388283	19	2.0	20	85	14	55	30	25	5	38	1.78
46389295--46389348	25	2.2	25	89	0	81	40	22	7	29	1.81
46391322--46391349	7	4.0	7	100	0	56	28	14	0	57	1.38
46391577--46391684	25	4.4	24	83	8	128	28	21	22	27	1.99
46391732--46391778	20	2.3	20	92	7	78	34	19	10	36	1.86
46399352--46399379	7	4.0	7	100	0	56	28	14	0	57	1.38
46399366--46399429	31	2.1	31	84	0	83	26	23	10	39	1.88
46399638--46399720	25	3.4	25	85	5	98	31	21	19	27	1.97
46399660--46399718	25	2.4	25	94	0	100	33	22	22	22	1.97
46399793--46399839	20	2.3	20	92	7	78	34	19	10	36	1.86
46406488--46406554	34	2.0	34	82	8	84	26	28	17	26	1.98
46409077--46409102	12	2.2	12	100	0	52	23	7	26	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46413023--46413194	47	3.7	48	78	10	160	27	16	30	25	1.97
46413023--46413194	94	1.8	94	82	2	220	27	16	30	25	1.97
46418269--46418332	25	2.6	25	85	9	103	46	10	23	18	1.80
46418265--46418360	31	3.3	30	78	16	112	47	12	19	19	1.81
46418862--46419214	27	13.1	27	85	0	411	40	6	21	30	1.79
46421361--46421491	6	21.3	6	69	16	72	48	12	18	20	1.79
46421384--46421491	31	3.3	31	77	14	108	47	12	19	21	1.81
46421370--46421491	37	3.5	37	76	13	130	49	11	18	20	1.78
46421996--46422404	27	15.2	27	82	5	398	40	6	21	30	1.79
46421996--46422377	81	4.7	80	84	4	448	41	6	21	30	1.78
46422355--46422416	27	2.3	27	82	0	79	29	6	22	41	1.78
46424544--46424651	6	17.5	6	69	16	69	48	12	18	20	1.81
46424530--46424629	37	2.7	37	84	0	137	49	11	19	21	1.78
46424544--46424651	31	3.3	31	75	14	108	48	12	18	20	1.81
46424530--46424651	37	3.5	37	75	13	121	50	11	18	20	1.77
46425154--46425613	27	17.2	27	86	3	572	42	8	20	28	1.81
46427279--46427326	23	2.1	23	96	0	87	29	18	16	35	1.93
46427742--46427872	6	21.3	6	70	16	72	50	13	16	19	1.78
46427751--46427872	37	3.5	37	75	13	139	50	13	16	19	1.77
46427796--46427872	31	2.5	31	80	0	100	50	12	14	22	1.76
46428378--46428772	27	14.7	27	85	0	441	42	5	20	31	1.75
46430913--46431037	6	20.3	6	69	16	78	50	13	18	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46430934--46431015	37	2.2	37	82	0	101	48	13	20	17	1.80
46430958--46431037	31	2.6	31	81	0	88	51	13	16	18	1.77
46431156--46431215	27	2.3	26	82	2	66	35	18	23	23	1.96
46431544--46431942	27	14.8	27	80	6	407	40	6	21	32	1.79
46434026--46434131	6	17.3	6	68	14	65	52	12	16	18	1.74
46434250--46434309	27	2.3	26	82	2	66	36	20	21	21	1.95
46434636--46434934	27	11.1	27	85	2	377	41	5	21	32	1.74
46435647--46435704	25	2.3	25	93	0	107	12	39	22	25	1.89
46437086--46437204	6	19.3	6	67	17	66	49	12	17	20	1.79
46437118--46437165	13	3.8	13	73	15	55	45	10	22	20	1.81
46437107--46437169	25	2.5	25	94	0	108	47	11	20	20	1.80
46437131--46437204	31	2.4	31	81	0	94	48	13	17	20	1.80
46437323--46437382	27	2.3	26	85	2	75	35	20	23	21	1.96
46437714--46438064	27	13.0	27	82	4	395	40	6	21	31	1.78
46437720--46438064	81	4.3	81	85	4	437	40	6	21	31	1.78
46438816--46438870	25	2.2	25	100	0	110	10	34	23	30	1.89
46448832--46448962	50	2.6	50	93	2	228	26	13	29	29	1.94
46451138--46451229	35	2.6	35	79	3	105	45	22	6	25	1.76
46459671--46459716	24	1.9	24	86	0	65	39	10	17	32	1.84
46466478--46466675	108	1.8	110	87	4	303	23	25	16	34	1.95
46466431--46466685	55	4.8	54	77	10	242	21	24	16	36	1.94
46468306--46468396	42	2.1	43	83	2	112	29	13	25	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46469987--46470137	27	5.6	27	86	0	203	37	19	18	24	1.94
46469987--46470154	27	6.2	26	81	9	153	38	18	17	25	1.93
46469983--46470154	81	2.1	80	81	3	209	38	18	18	25	1.92
46470805--46470856	27	2.0	26	84	3	68	21	26	17	34	1.95
46470893--46470952	27	2.3	27	85	2	77	23	23	20	33	1.97
46470792--46470924	69	2.0	67	81	3	158	21	28	20	29	1.98
46476986--46477131	27	5.4	27	89	0	220	34	20	21	23	1.96
46478578--46478745	40	4.2	40	83	4	106	25	27	23	23	2.00
46478601--46478745	40	3.6	40	85	4	193	23	26	24	25	2.00
46488802--46489008	38	5.6	38	80	6	167	26	20	28	24	1.99
46496910--46497094	38	4.7	39	81	10	150	25	21	27	25	2.00
46496952--46497093	38	3.7	37	81	10	151	27	19	27	25	1.99
46496910--46497131	78	2.8	78	80	11	240	25	21	27	25	2.00
46496910--46497131	40	5.7	40	84	8	253	25	21	27	25	2.00
46496963--46497164	78	2.6	77	80	9	207	27	20	26	25	1.99
46497000--46497164	79	2.1	78	83	7	210	25	21	27	26	1.99
46500014--46500222	38	5.0	38	72	18	157	29	24	15	30	1.95
46500059--46500192	48	2.8	48	87	1	189	30	23	14	31	1.95
46501780--46501818	20	2.0	20	84	0	51	33	23	2	41	1.68
46502073--46502201	54	2.4	55	83	7	167	22	27	17	33	1.96
46502003--46502201	49	3.8	52	78	9	194	21	26	17	34	1.95
46503795--46503920	46	2.7	46	92	0	207	21	21	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46511272--46511442	93	1.8	93	85	0	243	23	21	25	28	1.99
46520410--46520521	43	2.6	42	77	2	125	29	17	22	30	1.97
46525866--46525907	19	2.3	19	87	4	59	52	2	16	28	1.56
46526791--46526873	34	2.4	34	83	0	103	32	33	15	18	1.92
46531276--46531383	55	2.0	53	94	5	191	42	12	14	29	1.83
46536246--46536402	43	3.7	43	77	7	149	26	17	22	33	1.96
46545902--46546073	93	1.8	93	94	0	308	29	30	19	20	1.97
46545895--46546070	46	3.8	46	79	14	209	30	30	19	20	1.97
46550805--46550980	46	3.8	46	75	16	175	30	30	19	19	1.97
46550814--46550983	93	1.8	93	91	2	279	29	30	20	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352