genome.fa.s11.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  146  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47825505--47825685	80	2.3	81	83	9	221	23	20	27	27	1.99
47825586--47825735	40	3.8	38	80	10	131	25	22	28	24	1.99
47831297--47831331	18	2.0	18	88	5	54	54	0	22	22	1.45
47833893--47834037	40	3.7	40	83	6	163	26	26	23	23	2.00
47841910--47842055	40	3.7	40	78	7	154	26	26	23	23	2.00
47845003--47845117	31	3.8	30	78	15	105	34	10	13	40	1.79
47852558--47852600	18	2.4	18	84	3	61	13	46	27	11	1.78
47855860--47855923	33	2.0	32	84	3	83	20	21	20	37	1.94
47855885--47855944	27	2.3	26	85	2	75	21	23	20	35	1.96
47867561--47867704	39	3.7	39	91	1	200	27	29	22	21	1.99
47872035--47872063	12	2.4	12	100	0	58	6	27	41	24	1.80
47873395--47873568	89	2.0	89	93	2	296	24	13	20	41	1.88
47881707--47881882	46	3.8	46	75	12	171	30	26	21	21	1.99
47881758--47881901	46	3.1	46	70	22	122	29	27	20	22	1.98
47887179--47887362	40	4.6	40	82	2	226	26	23	25	25	2.00
47887179--47887400	40	5.6	40	79	4	216	25	23	25	25	2.00
47887179--47887400	120	1.9	120	84	3	304	25	23	25	25	2.00
47895190--47895345	40	3.8	41	76	13	151	26	23	23	26	2.00
47895889--47895937	26	1.9	25	91	4	80	26	12	28	32	1.92
47895889--47895948	26	2.3	26	83	8	61	30	11	25	33	1.91
47903828--47903925	27	3.5	28	90	2	135	26	13	28	31	1.94
47903856--47903938	27	3.0	27	87	5	96	30	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47903828--47903939	28	4.0	27	83	6	98	28	12	25	33	1.92
47908227--47908409	40	4.6	39	82	9	210	24	21	28	26	1.99
47908278--47908442	79	2.1	79	84	6	210	25	20	27	26	1.99
47916158--47916199	21	2.0	21	100	0	84	33	14	9	42	1.78
47924526--47924655	47	2.8	47	85	0	161	20	14	30	33	1.93
47926563--47926603	17	2.4	17	87	0	55	17	21	14	46	1.84
47942835--47942872	16	2.2	18	86	9	53	10	7	0	81	0.87
47944276--47944351	24	3.2	24	88	0	107	43	9	21	26	1.82
47944665--47944878	27	8.0	27	80	0	232	42	18	14	24	1.88
47948445--47948658	27	8.0	27	86	0	277	42	19	14	23	1.87
47948445--47948658	81	2.7	81	90	0	322	42	19	14	23	1.87
47953289--47953323	15	2.3	15	100	0	70	0	22	0	77	0.78
47967362--47967397	16	2.2	16	100	0	72	30	5	13	50	1.65
47974431--47974473	21	2.0	21	95	0	77	44	4	27	23	1.73
47995390--47995463	27	2.8	26	80	6	87	35	14	5	44	1.69
48000220--48000679	229	2.0	230	96	1	861	32	18	14	34	1.91
48005850--48005931	26	3.2	26	92	0	137	36	23	7	32	1.82
48016562--48016623	27	2.3	27	88	0	88	19	24	19	37	1.94
48016608--48016659	27	1.9	27	84	0	68	21	15	15	48	1.81
48016608--48016667	27	2.2	27	81	0	66	21	16	15	46	1.83
48019317--48019771	47	9.6	47	93	1	757	29	29	8	32	1.87
48019320--48019771	238	1.9	237	93	1	780	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48024052--48024239	40	4.7	40	85	0	205	26	28	21	23	1.99
48024092--48024281	80	2.4	79	81	4	202	25	26	22	25	2.00
48024047--48024278	120	1.9	119	81	2	277	25	28	21	24	1.99
48024218--48024308	39	2.3	40	86	3	121	23	27	21	27	1.99
48024674--48024744	29	2.4	29	88	4	99	26	30	15	26	1.96
48024726--48024871	43	3.4	43	100	0	292	26	35	15	22	1.94
48026294--48026748	47	9.6	47	94	2	768	29	29	8	32	1.87
48026294--48026748	96	4.8	96	94	3	771	29	29	8	32	1.87
48026294--48026748	238	1.9	237	94	1	804	29	29	8	32	1.87
48030068--48030171	20	5.2	21	69	17	87	13	25	21	39	1.90
48030050--48030189	39	3.6	39	92	0	226	15	26	21	37	1.92
48030873--48030923	3	18.0	3	84	11	56	72	1	0	25	0.95
48036563--48036846	40	7.1	40	91	0	444	22	22	27	27	1.99
48042142--48042178	18	2.1	18	100	0	74	45	10	21	21	1.82
48043042--48043085	20	2.3	19	88	4	61	47	9	13	29	1.74
48043050--48043128	39	2.0	40	82	2	97	49	8	10	31	1.67
48043050--48043128	20	4.0	20	85	3	97	49	8	10	31	1.67
48055287--48055316	9	3.3	9	95	0	51	23	0	16	60	1.36
48055304--48055338	10	3.5	10	92	0	52	40	0	2	57	1.14
48055354--48055400	10	4.8	10	77	15	53	29	2	2	65	1.15
48055440--48055486	10	5.3	10	78	21	52	25	0	0	74	0.82
48055440--48055487	9	5.6	9	79	18	57	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48056019--48056087	31	2.2	31	82	14	81	49	10	1	39	1.46
48061798--48061837	19	2.0	20	85	4	55	55	0	0	45	0.99
48064247--48064298	26	2.0	26	88	0	77	46	3	5	44	1.45
48064346--48064413	20	3.4	20	74	11	59	44	10	7	38	1.67
48068805--48068836	2	16.5	2	93	6	57	50	0	50	0	1.00
48069402--48069464	24	2.7	24	85	2	74	19	4	7	68	1.33
48069773--48069804	3	10.7	3	93	0	55	34	0	3	62	1.11
48070053--48070085	16	2.1	16	94	0	57	18	3	6	72	1.18
48070139--48070168	16	1.9	15	93	6	51	23	3	0	73	0.98
48073547--48073581	18	1.9	18	94	0	61	74	0	8	17	1.06
48073755--48073813	31	2.0	29	83	6	73	57	6	1	33	1.35
48077191--48077269	40	2.0	40	89	0	122	16	18	32	31	1.94
48083347--48083444	24	4.0	24	90	1	151	35	4	38	21	1.73
48085064--48085144	33	2.4	34	77	8	94	28	18	23	29	1.98
48085064--48085156	32	2.8	31	73	9	78	25	20	25	27	1.99
48090636--48090735	51	2.0	51	81	0	119	31	28	16	25	1.96
48090780--48090863	43	2.0	43	95	0	150	33	29	14	22	1.93
48104262--48104373	43	2.6	43	79	12	115	30	26	16	25	1.97
48107405--48107521	57	2.1	57	88	6	175	29	17	5	47	1.72
48110525--48110563	18	2.1	20	86	13	57	41	17	2	38	1.64
48110737--48110891	43	3.7	43	74	16	137	30	25	18	25	1.98
48112310--48112434	46	2.8	44	89	7	171	30	19	28	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48112501--48112611	48	2.3	48	85	1	141	31	23	21	23	1.98
48116328--48116448	46	2.6	47	83	9	140	26	19	31	23	1.98
48116461--48116631	49	3.5	49	84	2	220	30	20	25	23	1.98
48122188--48122212	13	1.9	13	100	0	50	60	0	16	24	1.36
48125831--48125933	42	2.4	43	80	4	120	26	20	25	28	1.99
48130372--48130599	40	5.7	40	89	3	343	26	27	21	24	1.99
48135004--48135068	27	2.4	30	73	19	70	36	4	23	35	1.75
48135584--48135686	42	2.4	42	79	4	109	26	19	26	28	1.99
48144370--48144418	25	1.9	25	83	4	62	34	0	6	59	1.22
48144452--48144515	31	2.1	31	96	0	119	50	3	3	43	1.33
48144942--48145012	19	3.8	19	83	12	103	36	0	21	42	1.53
48145546--48145926	126	3.0	126	92	0	627	34	17	19	29	1.94
48152864--48153079	40	5.4	40	87	3	278	23	23	28	24	1.99
48160925--48161181	40	6.5	40	86	2	281	24	23	26	25	2.00
48163012--48163040	12	2.3	13	94	5	51	20	6	6	65	1.40
48170004--48170049	7	6.6	7	100	0	92	56	15	0	28	1.39
48170045--48170087	7	6.0	7	80	2	50	55	11	6	25	1.60
48170010--48170082	21	3.5	21	79	7	69	57	12	2	27	1.49
48171061--48171195	45	3.0	45	77	8	139	54	6	7	31	1.54
48187432--48187476	19	2.4	19	100	0	90	15	20	26	37	1.92
48191749--48191940	96	2.0	96	98	0	375	29	18	25	27	1.98
48192097--48192182	42	2.0	42	84	0	109	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48197633--48198305	336	2.0	336	97	0	1283	38	8	20	32	1.82
48198360--48198514	47	3.3	48	84	4	190	25	14	26	34	1.94
48199861--48200021	24	6.6	24	74	7	137	32	32	12	22	1.91
48199876--48200015	74	1.9	75	83	7	187	33	32	11	22	1.90
48212161--48212194	2	17.0	2	100	0	68	50	0	50	0	1.00
48213190--48213229	21	1.9	21	90	10	64	37	0	12	50	1.41
48216677--48216706	15	2.0	15	93	0	51	13	10	6	70	1.34
48216666--48216708	15	2.9	14	80	10	50	16	9	6	67	1.40
48221990--48222203	46	4.6	44	78	11	171	28	18	29	23	1.98
48228772--48229067	148	2.0	148	93	0	511	40	10	18	30	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352