genome.fa.s11.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  116  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37254949--37255409	55	8.6	54	79	8	428	35	17	24	22	1.95
37254896--37255343	209	2.1	211	93	1	767	35	16	24	24	1.94
37255066--37255248	100	1.8	100	86	2	269	34	15	24	24	1.95
37263782--37263814	17	2.0	17	94	5	59	36	15	0	48	1.45
37264095--37264372	46	6.0	46	89	0	378	21	23	13	41	1.89
37267290--37267381	27	3.4	27	83	5	114	30	22	6	40	1.79
37267373--37267563	27	7.1	26	78	10	129	38	21	10	28	1.88
37267380--37267535	54	2.9	54	81	3	163	39	19	11	29	1.87
37267413--37267562	81	1.9	81	86	8	216	41	21	8	28	1.82
37267413--37267564	54	2.8	55	81	4	184	40	21	8	28	1.83
37267541--37267627	27	3.1	27	75	18	79	39	16	9	35	1.80
37268772--37268824	26	2.0	27	85	7	74	22	18	24	33	1.97
37270313--37270420	26	4.2	26	89	0	171	36	24	7	32	1.83
37271649--37271713	25	2.6	24	90	4	94	24	27	24	23	2.00
37271866--37271957	42	2.2	42	98	0	175	31	15	20	32	1.94
37274261--37274307	25	1.9	25	82	4	60	14	21	21	42	1.88
37274209--37274445	129	1.8	129	93	0	411	19	24	21	34	1.97
37274475--37274524	26	1.9	26	87	0	73	20	24	22	34	1.97
37274484--37274546	26	2.5	25	84	2	72	22	23	22	31	1.98
37275542--37275567	13	2.0	13	100	0	52	15	15	38	30	1.88
37278582--37278630	24	2.0	24	96	0	89	38	6	16	38	1.73
37280578--37280629	16	3.2	16	94	0	86	28	0	36	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37280610--37280704	45	2.1	44	88	5	138	34	4	27	33	1.76
37280842--37280896	25	2.2	25	84	9	69	52	1	0	45	1.11
37281027--37281187	47	3.6	46	69	18	140	48	3	3	45	1.34
37284419--37284476	29	2.0	29	86	6	82	53	3	17	25	1.59
37285100--37285142	18	2.4	18	88	0	59	67	6	16	9	1.40
37285113--37285150	17	2.2	18	85	4	51	73	5	13	7	1.22
37285313--37285366	17	3.4	16	82	7	56	70	0	29	0	0.88
37285290--37285344	28	1.9	29	85	10	78	61	0	36	1	1.06
37285307--37285366	16	3.6	17	80	13	63	68	0	31	0	0.90
37285459--37285524	26	2.7	26	93	6	111	36	9	9	45	1.68
37290142--37290278	72	1.9	71	87	1	202	34	18	27	19	1.96
37292263--37292980	149	4.8	148	91	2	1082	28	7	5	58	1.49
37292794--37292829	13	2.8	13	87	4	56	22	0	2	75	0.94
37292263--37292980	299	2.4	297	90	3	1136	28	7	5	58	1.49
37299577--37299622	10	4.7	10	76	15	51	65	2	0	32	1.05
37299768--37299812	19	2.4	19	85	14	58	37	2	6	53	1.40
37299744--37299839	40	2.5	38	73	10	88	50	1	3	45	1.24
37300074--37300120	19	2.5	17	81	18	58	34	2	4	59	1.29
37300402--37300436	17	2.1	17	89	5	54	14	0	14	71	1.15
37308533--37308703	93	1.8	93	94	0	306	28	28	21	21	1.98
37308528--37308700	46	3.7	46	77	13	201	29	27	20	21	1.98
37309123--37309182	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37310110--37313038	732	4.0	732	99	0	5754	28	17	22	31	1.97
37318060--37318150	19	4.9	19	89	8	152	36	10	16	36	1.84
37318081--37318136	18	3.5	15	81	18	60	37	10	16	35	1.83
37318060--37318150	35	2.5	37	89	8	141	36	10	16	36	1.84
37324895--37324928	9	3.7	9	92	4	50	88	0	5	5	0.64
37325899--37326063	44	3.8	44	88	0	231	30	14	27	27	1.95
37326031--37326507	87	5.5	87	93	0	792	25	15	27	31	1.96
37326448--37326682	78	3.0	78	95	2	427	32	19	24	23	1.98
37326622--37326895	45	6.1	45	76	6	232	30	14	28	26	1.95
37327242--37327339	17	5.5	17	80	15	101	36	10	16	36	1.82
37327242--37327333	19	5.0	19	88	7	145	36	10	15	36	1.82
37327263--37327318	18	3.5	15	81	18	60	37	10	16	35	1.83
37327242--37327333	35	2.5	37	87	8	134	36	10	15	36	1.82
37330777--37330802	7	3.7	7	100	0	52	15	0	0	84	0.62
37330878--37330915	19	2.0	19	94	0	67	34	10	23	31	1.89
37334165--37334222	24	2.6	23	81	10	66	36	0	5	58	1.20
37334719--37334781	33	1.9	33	93	0	108	57	1	4	36	1.30
37348570--37348612	22	2.0	22	100	0	86	27	18	41	11	1.85
37355942--37356078	49	2.8	48	88	4	202	27	21	30	20	1.98
37377698--37377822	47	2.7	47	76	16	134	26	31	16	26	1.96
37381302--37381333	16	2.0	16	93	0	55	62	18	9	9	1.52
37387547--37387683	27	5.1	27	90	0	202	37	22	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37387550--37387710	27	6.0	27	80	9	141	36	22	20	20	1.95
37387547--37387712	81	2.0	81	86	6	230	36	22	20	20	1.95
37396902--37396956	17	3.0	20	76	17	73	30	9	29	30	1.88
37399055--37399109	27	1.9	30	89	10	89	54	20	0	25	1.44
37399249--37399357	50	2.1	50	81	6	130	41	14	12	31	1.84
37404016--37404234	46	4.7	46	75	11	148	24	28	18	28	1.98
37411826--37411997	46	3.7	45	82	9	204	23	27	19	29	1.98
37411646--37411994	46	7.4	47	75	12	195	24	28	18	29	1.98
37422255--37422390	48	2.8	47	80	8	157	25	22	24	28	1.99
37422277--37422475	48	4.3	47	79	6	172	27	22	21	28	1.99
37429626--37429737	42	2.6	43	81	4	129	24	15	26	33	1.95
37429626--37429737	43	2.6	42	78	12	113	24	15	26	33	1.95
37442035--37442068	18	1.9	17	88	5	50	52	11	11	23	1.70
37442041--37442118	24	3.2	24	78	7	68	50	10	17	21	1.76
37442056--37442181	6	20.3	6	70	15	78	49	11	17	21	1.78
37442070--37442181	31	3.6	31	83	9	122	49	12	17	20	1.79
37442058--37442181	37	3.5	37	77	13	125	49	12	17	20	1.79
37442318--37442419	27	3.8	27	79	5	98	37	18	23	20	1.94
37442578--37442642	22	3.0	22	80	8	78	33	23	23	20	1.97
37443062--37443373	27	11.6	27	89	0	462	24	20	21	34	1.97
37443358--37443509	27	5.6	27	79	3	126	30	6	22	40	1.79
37443493--37443779	27	10.6	27	84	1	351	31	7	19	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37445731--37445777	6	7.8	6	83	9	60	46	14	17	21	1.83
37445906--37446010	27	3.9	27	89	0	156	24	20	20	34	1.96
37445995--37446341	27	12.9	27	76	8	102	33	8	19	38	1.82
37446050--37446389	81	4.2	80	79	7	319	32	8	19	39	1.82
37446104--37446389	27	10.6	27	84	0	338	32	8	19	40	1.81
37446133--37446399	54	4.9	54	88	1	374	32	7	19	40	1.80
37448792--37448891	29	3.5	29	84	4	123	26	17	30	27	1.97
37448792--37448900	58	1.9	57	83	5	139	26	15	30	27	1.96
37449805--37449896	29	3.2	29	83	7	125	26	11	30	31	1.92
37450798--37450882	28	3.0	28	82	3	98	25	15	28	30	1.96
37451796--37451894	28	3.5	28	83	5	119	25	17	29	28	1.97
37455011--37455082	37	1.9	37	91	0	117	30	8	38	22	1.83
37456129--37456242	29	4.0	29	85	6	144	26	15	29	28	1.96
37456141--37456251	57	1.9	58	88	1	170	26	16	30	27	1.96
37457126--37457231	29	3.7	29	96	0	176	24	17	30	27	1.98
37457375--37457401	13	2.1	13	100	0	54	29	14	33	22	1.94
37457955--37457988	18	1.9	18	88	5	52	38	23	8	29	1.85
37461943--37462014	36	2.0	36	100	0	144	30	8	19	41	1.81
37462012--37462233	40	5.6	40	83	3	270	23	24	25	26	2.00
37462012--37462233	80	2.8	79	90	3	329	23	24	25	26	2.00
37472289--37472331	19	2.2	19	83	8	50	16	27	2	53	1.55
37472745--37472787	8	5.4	8	88	0	50	51	13	23	11	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37472998--37473111	29	4.0	28	84	3	122	27	14	28	29	1.95
37473011--37473120	58	1.9	56	83	3	139	26	14	30	29	1.95
37478773--37478874	47	2.1	47	96	1	186	44	12	18	24	1.85
37488218--37488275	30	2.0	29	86	3	80	43	12	10	34	1.76
37501829--37502087	46	5.6	45	78	9	213	28	17	29	23	1.97
37502005--37502113	48	2.3	48	90	0	164	32	17	28	22	1.96
37507591--37507839	46	5.3	48	79	8	235	28	16	30	24	1.97
37507585--37507873	46	6.1	47	76	9	191	28	16	29	25	1.97
37529148--37529303	68	2.3	68	89	0	240	33	22	25	19	1.97
37533354--37533458	44	2.4	44	84	9	137	20	16	28	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352