genome.fa.s11.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  220  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72440436--72440521	28	3.0	28	86	3	118	29	13	29	27	1.95
72444445--72444505	30	2.0	30	83	0	77	29	22	8	39	1.83
72447539--72447603	28	2.3	29	86	2	87	29	33	12	24	1.92
72452234--72452340	28	3.8	28	80	11	121	27	34	12	26	1.92
72453289--72453333	22	2.0	23	82	8	56	44	11	26	17	1.82
72456962--72457054	28	3.3	29	84	4	118	31	34	10	23	1.89
72464712--72465022	46	6.7	46	75	10	274	22	19	27	30	1.98
72464705--72464875	93	1.8	93	89	0	270	23	19	26	30	1.98
72464714--72465022	139	2.2	139	94	0	528	21	19	28	30	1.98
72473660--72473935	46	5.8	49	75	13	182	23	29	18	28	1.98
72481426--72481601	46	3.8	46	74	12	180	21	20	28	29	1.98
72481422--72481594	93	1.9	93	91	0	283	21	20	29	28	1.98
72490493--72490764	39	7.0	39	90	0	418	24	29	24	22	1.99
72496365--72496630	39	7.0	39	89	5	400	24	28	25	22	1.99
72498238--72498459	81	2.7	80	91	5	349	24	28	22	23	2.00
72498238--72498459	40	5.5	40	92	4	349	24	28	22	23	2.00
72506431--72506647	40	5.4	40	91	3	330	25	28	22	24	1.99
72515199--72515333	48	2.8	48	80	6	148	29	17	24	28	1.97
72522972--72523111	48	2.9	49	80	2	140	28	16	25	30	1.97
72523019--72523135	48	2.4	48	80	5	130	32	17	23	25	1.97
72543774--72543805	16	2.0	16	93	0	55	50	28	6	15	1.68
72545016--72545058	16	2.7	16	77	0	50	60	13	11	13	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72545269--72545451	29	6.3	29	90	0	269	26	14	29	29	1.95
72546086--72546114	13	2.2	13	100	0	58	13	0	48	37	1.43
72554939--72554998	30	2.0	30	86	0	84	26	25	8	40	1.84
72558526--72558559	18	1.9	17	88	5	50	52	14	11	20	1.73
72558547--72558606	6	9.8	6	80	10	68	45	15	20	20	1.86
72558549--72558616	31	2.2	31	91	0	109	45	14	20	19	1.85
72559438--72559569	6	21.3	6	69	20	76	50	14	15	19	1.79
72559461--72559569	31	3.5	31	86	6	112	49	13	16	20	1.79
72559706--72559807	27	3.8	26	80	5	105	37	19	22	20	1.95
72559706--72559808	54	1.9	53	82	2	125	36	19	22	21	1.95
72560483--72561110	27	23.3	27	86	0	664	25	20	20	34	1.96
72561093--72561164	27	2.7	26	68	8	63	33	8	23	34	1.85
72561143--72561489	27	12.9	26	79	8	239	31	8	19	39	1.83
72561133--72561489	81	4.4	79	79	8	317	31	8	19	39	1.83
72561203--72561489	27	10.6	27	85	0	367	32	8	19	40	1.81
72563433--72563492	30	2.0	30	86	0	84	26	25	8	40	1.84
72566470--72566530	21	2.9	21	90	4	97	34	18	11	36	1.86
72566470--72566541	5	14.0	5	72	10	56	36	18	9	36	1.83
72566470--72566536	10	6.6	10	81	11	75	35	17	10	35	1.85
72568054--72568225	93	1.8	93	89	0	272	27	27	21	23	1.99
72568047--72568216	46	3.7	46	75	13	168	29	28	20	21	1.98
72571632--72571691	30	2.0	30	83	0	75	40	10	20	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72572011--72572483	48	9.8	48	83	1	581	27	16	28	27	1.97
72579972--72580027	19	3.1	19	72	15	64	33	5	17	42	1.72
72580788--72580915	40	3.2	40	95	1	231	21	21	27	29	1.98
72588852--72588919	29	2.3	29	85	5	93	27	30	13	27	1.94
72589021--72589099	29	2.7	30	82	13	110	29	30	15	25	1.96
72594517--72594584	29	2.3	29	85	5	93	27	30	13	27	1.94
72594686--72594764	29	2.7	30	82	13	110	29	30	15	25	1.96
72596025--72596049	11	2.3	11	100	0	50	28	32	8	32	1.86
72596665--72596720	19	3.1	19	72	15	64	32	7	17	42	1.77
72596663--72596729	35	2.0	35	88	5	102	31	5	14	47	1.69
72597478--72597609	40	3.3	40	97	0	255	23	22	25	28	2.00
72605220--72605277	27	2.1	27	93	0	98	31	17	17	34	1.93
72606423--72606472	7	7.1	7	90	0	82	48	38	0	14	1.44
72612534--72612581	18	2.6	18	96	3	87	58	0	4	37	1.18
72621245--72621436	46	4.2	46	68	15	119	29	27	20	22	1.98
72628826--72628996	93	1.8	93	86	2	245	29	28	19	22	1.98
72634783--72634836	28	2.0	27	88	3	81	31	22	25	20	1.98
72636601--72636695	29	3.3	29	80	1	111	30	29	14	25	1.95
72642004--72642075	34	2.1	34	97	0	135	48	9	23	18	1.77
72642456--72642545	27	3.3	28	86	6	123	34	18	23	23	1.96
72647711--72647780	27	2.6	26	95	2	95	31	28	12	27	1.93
72647711--72647808	28	3.5	28	90	2	135	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72648255--72648280	12	2.2	12	100	0	52	42	0	7	50	1.31
72648729--72648755	14	1.9	14	100	0	54	22	25	22	29	1.99
72658877--72659049	43	4.0	42	70	14	129	24	16	26	32	1.96
72661437--72661578	74	1.9	74	89	0	221	28	16	22	32	1.96
72662200--72662267	3	22.7	3	87	0	100	69	0	29	1	0.98
72663539--72663579	3	13.7	3	100	0	82	68	0	31	0	0.90
72664447--72664485	11	3.8	10	90	10	53	30	0	5	64	1.15
72665140--72665175	6	6.2	6	96	3	65	0	13	16	69	1.19
72666867--72667018	28	5.4	27	74	13	110	32	28	17	21	1.96
72666867--72667022	56	2.8	57	88	1	215	32	28	17	21	1.96
72667028--72667258	40	5.8	40	92	1	349	25	29	22	21	1.99
72668745--72669053	48	6.4	48	96	0	537	31	28	5	34	1.81
72678079--72678269	40	4.8	40	91	1	197	26	27	21	24	1.99
72678123--72678268	40	3.7	39	93	2	229	28	26	21	23	1.99
72678078--72678268	79	2.4	80	84	2	242	27	27	21	24	1.99
72686271--72686463	40	4.8	40	90	2	219	27	27	21	23	1.99
72686315--72686462	40	3.7	40	93	2	226	29	26	20	23	1.99
72689903--72689972	26	2.7	26	76	12	63	35	18	24	21	1.95
72690207--72690259	27	2.0	27	84	0	70	35	15	18	30	1.92
72690227--72690369	27	5.3	26	77	6	101	32	10	16	41	1.82
72690234--72690381	55	2.7	55	75	5	129	30	9	17	42	1.81
72690431--72690492	28	2.3	27	82	2	70	30	4	16	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72690394--72690509	27	4.3	27	72	8	83	28	7	19	43	1.79
72690459--72690517	27	2.2	27	84	0	73	28	10	18	42	1.83
72690506--72690582	27	2.9	27	86	0	100	28	22	15	33	1.94
72693142--72693272	66	1.9	70	80	9	153	33	14	30	21	1.93
72700359--72700437	35	2.3	35	95	4	142	59	12	0	27	1.34
72701036--72701305	54	5.0	54	84	3	301	40	18	14	26	1.89
72701076--72701307	81	2.8	82	84	1	306	40	18	13	27	1.88
72701038--72701305	27	9.9	27	82	0	266	40	18	14	26	1.89
72706903--72706982	20	4.2	20	72	18	64	42	20	6	31	1.76
72706930--72706984	19	2.8	19	81	10	67	40	21	5	32	1.76
72713694--72713956	40	6.6	40	87	3	316	26	28	20	24	1.99
72724699--72724838	48	2.9	48	92	0	235	35	17	15	30	1.92
72726184--72726222	20	2.0	20	90	10	62	12	5	30	51	1.62
72729888--72730001	20	5.7	20	71	8	79	42	14	27	15	1.87
72729888--72730001	60	1.9	60	83	3	149	42	14	27	15	1.87
72732196--72732398	101	2.0	101	90	0	316	32	22	14	31	1.93
72735065--72735096	10	3.0	11	90	9	57	9	0	9	81	0.88
72737625--72737665	20	2.0	20	100	0	82	39	14	24	21	1.91
72738689--72738815	39	3.3	39	92	0	218	30	27	22	19	1.98
72741248--72741315	29	2.3	29	82	0	91	29	29	16	25	1.96
72741525--72741558	16	2.1	16	94	0	59	14	23	11	50	1.76
72745736--72745920	40	4.6	40	79	7	187	24	24	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72745736--72745920	80	2.3	81	85	4	232	24	24	27	23	2.00
72753805--72753989	40	4.6	40	81	4	221	25	24	26	23	2.00
72753805--72753989	80	2.3	81	85	2	248	25	24	26	23	2.00
72757071--72757158	29	3.1	27	80	12	113	27	31	17	23	1.97
72761207--72761428	40	5.7	40	85	7	278	24	22	27	25	1.99
72761207--72761428	76	2.8	79	82	10	267	24	22	27	25	1.99
72761207--72761461	79	3.3	78	79	9	200	25	21	27	25	1.99
72769102--72769322	40	5.7	39	83	11	249	24	22	28	24	2.00
72769102--72769322	75	2.8	79	83	9	265	24	22	28	24	2.00
72772769--72772951	39	4.6	41	81	11	213	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352