Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  326  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105430894--105430982
25
3.6
25
78
7
83
34
4
0
60
1.17
105430904--105430995
49
1.9
46
82
10
114
34
5
0
59
1.20
105431154--105431192
17
2.3
17
86
0
51
33
5
0
61
1.18
105431130--105431227
43
2.4
41
80
12
112
32
5
0
62
1.17
105431140--105431280
14
10.1
14
68
21
82
33
4
1
60
1.27
105431139--105431228
42
2.2
41
80
9
103
33
4
0
62
1.15
105431203--105431267
21
3.1
20
75
20
62
32
6
3
58
1.38
105437272--105437306
17
2.1
17
94
0
61
34
8
0
57
1.29
105437297--105437364
21
3.3
21
80
13
70
33
1
5
58
1.31
105443674--105443803
7
18.0
7
73
11
66
40
38
0
20
1.58
105443704--105443837
14
9.3
14
72
6
52
46
32
0
21
1.52
105443725--105443796
30
2.4
29
81
6
83
38
41
0
19
1.52
105443795--105443830
15
2.5
15
90
4
56
52
25
0
22
1.47
105443795--105443838
22
2.0
22
81
0
52
52
25
0
22
1.48
105444275--105444581
41
7.6
41
84
2
395
30
24
19
25
1.98
105444275--105444581
81
3.8
81
92
0
479
30
24
19
25
1.98
105449632--105449671
10
4.0
10
87
12
64
70
2
7
20
1.24
105450308--105450494
96
1.9
97
91
1
304
30
26
14
27
1.95
105451664--105451725
8
7.6
8
71
10
54
79
0
3
17
0.87
105451665--105451724
24
2.4
25
83
10
79
78
0
3
18
0.89
105451665--105451724
12
4.9
12
82
8
68
78
0
3
18
0.89
105459652--105459747
45
2.1
45
100
0
192
57
16
11
14
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105460480--105460692
3
69.7
3
67
17
84
27
8
2
61
1.39
105463765--105463807
14
2.9
14
82
10
50
48
2
2
46
1.27
105465780--105465839
24
2.4
25
81
13
63
13
13
13
60
1.60
105475831--105475915
23
4.3
19
71
22
59
57
2
2
37
1.24
105475831--105475869
10
4.2
9
84
15
53
64
2
0
33
1.08
105477279--105477436
39
4.0
39
76
8
140
31
22
21
24
1.98
105477279--105477452
40
4.4
39
76
9
163
32
21
20
24
1.98
105477303--105477647
81
4.4
80
68
15
250
29
19
20
30
1.97
105477302--105477483
40
4.6
40
73
13
133
29
20
20
29
1.98
105477303--105477483
80
2.3
81
87
3
251
28
20
20
29
1.98
105477845--105477896
21
2.4
21
78
9
52
26
0
25
48
1.52
105477955--105478010
7
7.9
7
87
2
76
16
1
53
28
1.53
105477938--105478010
21
3.4
21
83
5
85
15
1
53
30
1.50
105477931--105478058
7
18.0
7
73
11
73
18
0
43
36
1.56
105478191--105478233
15
3.0
15
80
10
54
23
0
30
46
1.52
105478186--105478228
22
2.0
22
86
9
61
25
0
27
46
1.53
105481738--105481915
43
4.1
43
83
0
185
26
17
26
29
1.97
105481738--105481924
86
2.2
86
84
0
230
25
17
26
30
1.97
105481756--105481925
43
4.0
43
84
0
205
25
17
27
29
1.98
105492263--105492313
25
2.0
25
96
0
93
50
3
13
31
1.60
105492452--105492602
78
1.9
78
93
0
257
45
13
15
25
1.82
105496721--105496790
30
2.4
31
76
9
74
47
0
4
48
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105502060--105502147
18
4.9
18
75
0
86
34
22
10
32
1.88
105502056--105502147
36
2.6
36
91
0
148
32
21
11
33
1.90
105523075--105523115
21
2.0
21
90
0
64
29
21
29
19
1.98
105524772--105524805
16
2.1
16
100
0
68
32
26
17
23
1.97
105526446--105526480
13
2.7
13
90
0
52
42
2
11
42
1.55
105534322--105534397
30
2.6
28
78
10
71
63
5
1
30
1.25
105534453--105534497
23
2.0
23
90
0
72
62
0
2
35
1.08
105535252--105535297
23
2.0
23
87
8
67
54
2
0
43
1.12
105548471--105548498
6
4.7
6
100
0
56
85
0
0
14
0.59
105549086--105549569
239
2.0
242
93
2
830
39
11
11
36
1.79
105569885--105570079
38
5.0
38
86
3
239
21
21
25
31
1.98
105572494--105572528
5
6.8
5
93
6
61
77
2
0
20
0.90
105578470--105578628
27
5.9
27
81
11
175
35
23
23
18
1.96
105578512--105578628
54
2.2
54
96
0
216
35
24
23
16
1.94
105580255--105580362
26
4.2
26
93
0
189
36
25
6
32
1.81
105585616--105585748
26
5.2
27
75
15
115
36
23
22
18
1.95
105587327--105587434
26
4.2
26
97
0
207
36
26
6
30
1.82
105591116--105591183
24
2.8
24
95
0
127
44
20
19
16
1.87
105595029--105595096
20
3.5
20
76
11
77
38
16
7
38
1.76
105595120--105595156
20
1.9
19
89
10
58
45
13
2
37
1.58
105595478--105595591
60
1.9
60
85
0
156
48
7
3
41
1.47
105600719--105600777
6
9.8
6
88
0
73
40
0
8
50
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105600717--105600775
14
4.1
14
89
8
91
38
0
10
50
1.36
105600723--105600777
10
5.5
10
86
0
74
40
0
9
50
1.34
105600713--105600777
16
4.2
16
90
7
89
38
0
10
50
1.37
105601810--105601858
25
2.0
25
84
8
64
38
2
4
55
1.31
105601909--105601952
19
2.4
19
80
3
54
61
2
4
31
1.28
105602599--105602633
15
2.3
15
100
0
70
42
14
20
22
1.88
105606904--105606940
3
12.3
3
100
0
74
0
32
0
67
0.91
105606975--105607019
16
2.7
17
82
6
56
0
55
0
44
0.99
105611436--105611570
35
3.7
37
79
10
152
31
11
22
33
1.91
105619376--105619507
35
3.6
38
79
9
141
33
23
11
31
1.90
105620521--105620671
18
7.9
18
71
17
90
42
12
8
36
1.74
105620784--105620808
6
4.2
6
100
0
50
52
16
16
16
1.76
105620802--105620904
47
2.2
47
89
0
152
40
22
18
18
1.91
105620796--105620914
47
2.3
52
75
16
131
41
21
19
18
1.91
105621968--105622006
17
2.2
17
86
9
51
2
23
0
74
0.94
105627154--105627197
24
1.9
22
86
9
61
34
11
9
45
1.72
105638168--105638296
58
2.2
59
80
8
147
24
11
13
50
1.74
105638488--105638537
24
2.1
24
84
0
64
66
2
2
30
1.14
105639714--105639819
52
2.0
52
96
0
194
39
12
10
37
1.77
105641209--105641259
20
2.5
21
75
12
52
49
1
7
41
1.43
105643798--105643888
46
2.0
46
93
0
155
48
7
1
42
1.39
105645507--105645562
21
2.6
22
94
5
98
28
33
8
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105651176--105651233
20
2.7
22
78
10
66
58
8
1
31
1.38
105651229--105651267
17
2.2
18
90
4
62
56
0
0
43
0.99
105657087--105657119
17
1.9
17
88
11
50
27
6
0
66
1.15
105658035--105658063
2
14.5
2
100
0
58
0
0
51
48
1.00
105658063--105658102
2
20.0
2
89
0
62
45
0
55
0
0.99
105669022--105669322
18
16.3
18
71
11
144
37
15
10
35
1.83
105669007--105669322
36
8.6
36
71
10
192
38
15
10
35
1.82
105669188--105669254
8
7.6
8
72
18
53
32
13
11
41
1.81
105669211--105669256
8
5.0
10
77
20
55
34
13
10
41
1.79
105669480--105669504
6
4.2
6
100
0
50
52
16
16
16
1.76
105669485--105669594
45
2.4
45
89
0
157
43
17
18
20
1.88
105669697--105669734
16
2.4
16
86
8
51
34
10
0
55
1.34
105673615--105673658
20
2.1
21
88
12
65
43
4
0
52
1.22
105675417--105675655
49
4.8
49
78
3
253
30
26
17
25
1.97
105675430--105675655
100
2.3
99
83
3
267
30
26
17
25
1.97
105677237--105677294
16
3.5
17
79
9
57
37
1
1
58
1.18
105677304--105677352
17
3.0
16
79
11
55
32
2
10
55
1.45
105677424--105677457
18
1.9
17
88
5
50
32
8
0
58
1.29
105680096--105680193
53
1.9
53
83
10
132
30
5
5
59
1.41
105682586--105682640
20
2.8
20
77
0
56
45
16
0
38
1.47
105683561--105683607
21
2.2
21
77
7
51
53
6
2
38
1.39
105683658--105683742
29
2.8
30
75
10
84
40
15
9
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105702429--105702463
15
2.3
16
85
14
56
57
0
0
42
0.99
105702436--105702505
24
3.0
24
82
10
76
62
1
0
35
1.04
105705803--105706052
46
5.6
45
82
11
266
20
23
14
42
1.88
105705900--105706021
37
3.1
37
75
19
127
21
25
13
40
1.89
105705853--105706021
83
2.0
84
89
3
261
20
24
13
41
1.88
105713141--105713185
23
2.0
23
86
4
65
42
0
2
55
1.12
105724881--105724927
24
2.0
24
82
0
58
21
12
2
63
1.39
105725267--105725324
29
2.0
29
93
0
98
29
22
0
48
1.51
105725333--105725460
29
4.6
28
73
11
102
17
21
3
57
1.53
105725383--105725428
14
3.2
14
79
14
58
10
17
4
67
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352