genome.fa.s11.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  282  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92245051--92245157	27	4.0	26	81	10	108	36	17	25	20	1.94
92245051--92245157	54	2.0	54	81	7	128	36	17	25	20	1.94
92245577--92245608	8	4.0	8	91	0	55	3	25	25	46	1.67
92252822--92252933	27	4.2	26	83	10	127	34	23	25	16	1.95
92252822--92252933	54	2.1	54	85	6	147	34	23	25	16	1.95
92253892--92254116	40	5.7	40	80	9	210	25	21	28	25	1.99
92253945--92254116	79	2.2	78	82	7	204	25	21	28	25	1.99
92253972--92254149	79	2.2	80	81	3	191	25	21	28	24	1.99
92260779--92261003	40	5.7	40	80	9	210	25	21	28	25	1.99
92260832--92261003	79	2.2	78	82	7	204	25	21	28	25	1.99
92260859--92261036	79	2.2	80	81	3	191	25	21	28	24	1.99
92271371--92271454	29	2.9	28	84	8	105	21	27	11	39	1.88
92273000--92273184	79	2.3	81	84	7	236	24	22	27	25	2.00
92273001--92273184	40	4.6	40	83	9	216	24	22	27	25	2.00
92273001--92273217	79	2.7	79	81	7	201	25	22	27	24	2.00
92280858--92281042	79	2.3	81	84	7	236	24	22	27	25	2.00
92280859--92281042	40	4.6	40	83	9	216	24	22	27	25	2.00
92280859--92281075	79	2.7	79	81	7	201	25	22	27	24	2.00
92282412--92282544	29	4.6	29	78	13	114	23	24	12	39	1.90
92285587--92285705	27	4.4	27	81	4	141	18	15	21	44	1.87
92287231--92287339	43	2.6	42	77	4	103	23	25	24	25	2.00
92303237--92303264	7	4.0	7	100	0	56	57	14	28	0	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92311782--92311830	20	2.3	22	79	10	57	48	4	0	46	1.20
92318273--92318483	40	5.3	39	78	4	217	27	28	19	24	1.99
92318273--92318483	79	2.7	79	85	2	271	27	28	19	24	1.99
92325448--92325658	40	5.3	39	82	6	255	26	28	20	24	1.99
92325448--92325658	80	2.7	80	90	1	336	26	28	20	24	1.99
92339721--92339881	29	5.6	29	94	1	261	24	34	16	24	1.96
92343594--92343897	40	7.6	40	98	0	581	29	20	27	22	1.98
92354435--92354491	20	2.9	21	85	10	68	36	7	21	35	1.80
92354436--92354491	9	5.6	11	68	23	52	37	7	19	35	1.79
92354541--92354708	26	6.5	25	76	10	119	32	20	20	27	1.97
92354541--92354676	26	5.3	26	79	4	145	31	19	19	28	1.97
92354541--92354676	52	2.7	52	85	7	165	31	19	19	28	1.97
92355478--92355521	22	2.0	22	100	0	88	13	36	18	31	1.90
92362180--92362227	25	1.9	25	86	0	69	35	22	14	27	1.93
92362253--92362317	9	6.7	10	75	18	66	35	6	21	36	1.79
92362253--92362317	5	13.4	5	75	18	66	35	6	21	36	1.79
92362274--92362329	11	5.5	11	71	16	57	37	10	19	32	1.86
92362273--92362329	20	2.8	20	97	0	105	36	10	19	33	1.86
92362379--92362472	26	3.7	25	81	8	111	28	23	24	23	1.99
92362379--92362462	26	3.3	26	85	8	113	29	21	23	25	1.99
92398758--92398862	29	3.6	30	79	11	112	25	28	15	30	1.96
92398738--92398849	58	1.9	58	85	3	154	25	29	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92402056--92402201	72	2.0	72	100	0	292	32	16	9	41	1.81
92407039--92407098	25	2.4	25	79	17	72	30	21	21	26	1.99
92407306--92407388	30	2.7	31	87	3	125	31	21	25	21	1.98
92407306--92407383	31	2.6	30	89	2	120	30	23	25	20	1.98
92408149--92408200	27	2.0	26	84	3	68	17	26	21	34	1.95
92413494--92413776	80	3.6	79	88	5	378	23	22	27	26	1.99
92413494--92413762	119	2.2	120	86	4	375	23	22	27	26	1.99
92413494--92413790	40	7.5	39	83	9	336	24	22	27	25	2.00
92430926--92431036	54	2.1	54	96	0	204	24	17	9	49	1.75
92433510--92433597	45	2.0	45	93	0	149	39	26	11	22	1.88
92433526--92433601	21	3.5	21	68	16	55	39	26	11	22	1.88
92436875--92436962	45	2.0	45	90	4	142	38	27	10	23	1.87
92441411--92441488	40	2.0	40	87	5	113	35	33	10	20	1.86
92446457--92446620	42	3.7	42	74	15	141	21	20	28	29	1.98
92446454--92446621	93	1.8	89	87	7	248	22	20	29	28	1.98
92449567--92449645	31	2.5	31	95	0	140	27	24	18	29	1.98
92449669--92449760	42	2.2	42	92	0	148	34	21	14	29	1.93
92449905--92450027	26	4.8	26	88	1	178	27	22	22	26	1.99
92449905--92450027	52	2.4	51	94	2	212	27	22	22	26	1.99
92450825--92450889	27	2.4	27	82	5	78	21	24	18	35	1.96
92450940--92451266	27	12.0	27	75	8	216	31	9	18	40	1.82
92450928--92451266	54	6.2	53	75	7	243	30	9	18	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92450943--92451334	27	14.4	27	78	8	170	33	8	19	39	1.81
92451006--92451402	27	14.7	27	81	4	248	32	7	20	38	1.81
92451250--92451433	81	2.3	81	75	0	179	36	5	21	35	1.78
92452419--92452474	15	3.7	15	78	7	69	12	16	12	58	1.62
92453728--92453890	39	4.2	39	92	0	254	28	31	19	20	1.97
92465709--92465844	69	2.0	69	95	0	245	30	18	15	35	1.92
92466498--92466547	27	1.9	26	84	8	66	36	16	20	28	1.93
92469378--92469465	45	2.0	45	93	0	149	37	26	12	23	1.90
92469394--92469463	21	3.2	21	64	18	52	35	25	14	24	1.93
92470899--92470948	15	3.0	15	83	16	55	42	2	14	42	1.56
92470918--92470955	20	1.9	20	89	10	60	36	5	13	44	1.66
92471291--92471412	18	6.8	18	80	0	109	39	11	15	33	1.83
92471291--92471414	54	2.3	54	85	0	158	38	11	15	34	1.83
92471312--92471430	54	2.2	54	83	0	130	40	9	15	34	1.80
92475634--92475796	33	4.9	32	70	10	103	29	25	14	30	1.95
92475518--92475827	101	3.1	101	89	0	469	28	25	15	30	1.96
92477573--92477757	40	4.6	39	80	6	194	24	20	27	27	1.99
92477573--92477729	79	2.0	80	83	6	203	24	21	26	26	1.99
92477607--92477779	79	2.2	78	77	10	172	27	19	25	27	1.99
92485668--92485849	79	2.3	81	82	7	221	24	21	27	25	2.00
92485667--92485851	40	4.7	40	82	6	225	24	21	27	26	1.99
92485668--92485884	79	2.7	78	77	12	219	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92489397--92489424	13	2.2	13	100	0	56	25	53	7	14	1.66
92500296--92500329	17	2.0	17	100	0	68	35	17	11	35	1.87
92502339--92502409	30	2.4	30	95	0	124	14	21	32	32	1.93
92514771--92514948	27	6.6	27	83	3	205	26	15	28	29	1.96
92514772--92514927	82	1.9	81	88	3	233	26	15	28	29	1.96
92514768--92514948	82	2.2	81	83	2	229	27	15	27	29	1.96
92519838--92519867	13	2.3	13	100	0	60	53	16	16	13	1.73
92522594--92522769	27	6.6	27	82	6	196	26	14	28	30	1.95
92522598--92522748	80	1.9	79	87	4	223	26	14	28	30	1.95
92579453--92579687	51	4.6	49	75	8	152	27	16	25	30	1.96
92579502--92579700	104	1.9	104	86	6	289	29	17	24	29	1.97
92579506--92579696	51	3.7	53	74	15	184	28	17	24	29	1.97
92585027--92585209	40	4.6	41	82	9	204	25	27	22	24	2.00
92585027--92585209	79	2.3	80	82	9	216	25	27	22	24	2.00
92592923--92593107	79	2.3	81	84	7	236	25	27	22	24	2.00
92592923--92593107	40	4.7	40	83	7	234	25	27	22	24	2.00
92598098--92598170	34	2.2	34	87	7	105	30	21	21	26	1.99
92598116--92598194	33	2.4	33	85	6	97	25	24	26	24	2.00
92602092--92602268	40	4.4	40	82	4	216	23	21	27	27	1.99
92602498--92602539	22	1.9	22	85	9	59	33	9	14	42	1.78
92606355--92606571	40	5.4	40	86	3	296	23	22	28	25	1.99
92606799--92606840	22	1.9	22	85	9	59	33	9	14	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92608097--92608157	30	2.0	30	83	0	77	37	4	24	32	1.77
92608488--92608755	104	2.6	105	92	1	441	19	20	30	29	1.97
92625123--92625210	45	2.0	45	95	0	158	36	26	13	23	1.92
92625139--92625209	21	3.2	21	67	18	54	35	26	15	22	1.94
92629584--92629636	18	3.1	18	72	10	65	28	15	7	49	1.71
92630906--92630936	14	2.2	14	100	0	62	74	0	12	12	1.08
92632916--92632986	21	3.2	22	70	18	74	39	28	11	21	1.87
92632916--92633003	45	2.0	45	97	0	167	38	25	12	23	1.90
92632932--92633002	21	3.2	21	69	18	63	38	25	14	22	1.92
92640588--92640770	40	4.7	40	82	8	207	25	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352