genome.fa.s11.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  188  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61816075--61816150	22	3.3	22	75	13	71	60	5	5	28	1.40
61816080--61816144	26	2.5	25	85	5	76	60	6	4	29	1.41
61816168--61816299	23	5.6	24	76	8	119	55	3	6	34	1.43
61816785--61816912	30	4.3	30	97	0	229	17	6	50	25	1.69
61819631--61819663	17	2.0	17	94	5	59	36	15	0	48	1.45
61819943--61820530	46	12.8	46	90	1	822	21	22	14	40	1.90
61822742--61822793	23	2.3	22	75	21	54	9	23	1	65	1.32
61822751--61822806	12	4.7	12	74	14	53	12	23	0	64	1.27
61831562--61831621	31	2.0	30	86	3	84	48	8	10	33	1.67
61835171--61835256	45	1.9	45	92	4	147	25	13	24	36	1.93
61836353--61836434	42	2.0	42	83	9	105	20	26	28	24	1.99
61839743--61839973	48	4.8	48	73	15	188	24	30	19	25	1.98
61839741--61840106	47	7.7	47	71	15	247	23	29	18	27	1.98
61845035--61845137	42	2.5	42	87	3	145	30	25	13	31	1.94
61848428--61848473	22	2.1	22	83	0	56	50	4	0	45	1.21
61856228--61856260	16	2.1	16	94	0	57	48	30	6	15	1.69
61857605--61857651	19	2.5	19	82	3	51	27	19	34	19	1.96
61857720--61857838	29	4.2	28	77	8	98	31	13	27	27	1.94
61857724--61857836	58	2.0	57	82	5	138	30	14	28	26	1.95
61861454--61861491	18	2.2	18	85	4	51	44	2	0	52	1.14
61861546--61861602	15	3.5	15	71	17	51	50	0	1	47	1.11
61862703--61862729	7	3.9	7	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61868695--61868803	45	2.3	46	86	7	141	33	9	29	28	1.88
61868874--61868958	40	2.2	40	84	2	109	17	22	31	28	1.97
61873302--61873408	27	3.9	27	83	2	133	29	10	21	38	1.87
61874555--61874589	6	5.7	6	96	3	61	80	0	17	2	0.84
61877459--61877526	35	1.9	35	91	5	111	32	27	11	27	1.92
61884230--61884299	34	2.1	34	89	2	106	28	24	22	24	1.99
61888461--61888726	42	6.4	42	81	5	281	25	19	23	30	1.98
61888461--61888704	84	2.9	84	86	4	318	24	20	24	31	1.98
61903703--61903870	40	4.2	40	93	1	259	21	23	25	29	1.99
61904671--61905386	358	2.0	358	97	0	1360	31	15	22	30	1.95
61912828--61913064	42	5.6	42	88	0	321	24	17	24	33	1.96
61912791--61913073	84	3.3	84	80	4	311	24	17	25	32	1.97
61915969--61916007	20	2.0	20	89	0	60	53	2	7	35	1.43
61919010--61919071	27	2.3	27	82	0	70	37	19	19	24	1.94
61941446--61941629	40	4.6	40	81	6	187	23	21	27	27	1.99
61941526--61941676	40	3.8	39	80	6	117	24	22	28	24	1.99
61949293--61949476	40	4.6	40	82	6	196	23	20	27	28	1.99
61949293--61949473	80	2.3	81	83	9	221	23	20	27	27	1.99
61949374--61949523	40	3.8	38	80	8	122	24	22	28	24	1.99
61956797--61956874	29	2.7	28	84	11	104	25	15	30	28	1.96
61956995--61957070	29	2.6	29	100	0	152	26	11	31	30	1.92
61956796--61957182	203	1.9	203	91	0	632	29	13	25	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61964703--61964732	16	1.9	15	93	6	51	33	23	0	43	1.54
61964993--61965222	52	4.5	50	79	7	212	30	24	17	26	1.97
61964993--61965170	50	3.5	49	84	6	214	28	24	19	26	1.99
61968138--61968166	15	1.9	15	100	0	58	55	13	17	13	1.70
61968302--61968338	18	2.1	18	100	0	74	27	29	0	43	1.55
61970729--61970758	16	1.9	15	93	6	51	33	23	0	43	1.54
61972585--61972676	29	3.2	29	82	3	114	25	16	30	28	1.96
61972572--61972676	29	3.6	28	80	8	104	26	15	29	28	1.96
61972585--61972695	58	1.9	57	85	8	154	26	16	29	27	1.97
61975965--61975995	8	3.9	8	95	0	53	41	25	25	6	1.79
61976210--61976284	29	2.6	29	85	2	89	29	17	28	25	1.97
61980146--61980757	49	12.8	49	92	3	930	29	29	8	33	1.86
61980146--61980757	96	6.4	97	91	3	940	29	29	8	33	1.86
61980146--61980756	145	4.2	145	94	1	1043	29	29	8	33	1.86
61981622--61981721	48	2.1	48	98	0	191	23	22	22	33	1.98
61985172--61985246	30	2.6	28	83	6	96	30	13	29	26	1.94
61986267--61986313	20	2.4	19	80	13	51	25	2	19	53	1.56
61986473--61986557	38	2.2	37	79	8	91	37	28	10	23	1.88
61988958--61989016	27	2.2	27	93	0	100	42	22	18	16	1.89
61989131--61989195	27	2.4	26	92	2	103	20	23	23	33	1.97
61989144--61989230	27	3.3	27	81	1	86	18	22	21	36	1.95
61989183--61989263	26	3.1	26	81	0	90	23	19	19	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62001332--62001545	43	5.0	43	77	6	202	28	13	23	35	1.93
62004190--62004315	49	2.6	48	88	5	175	26	28	18	26	1.98
62004383--62004500	46	2.5	46	88	9	161	23	27	19	29	1.98
62004383--62004502	47	2.6	46	88	9	165	23	27	19	30	1.98
62008583--62008784	40	5.1	40	86	5	284	26	26	23	24	2.00
62008585--62008784	80	2.5	81	93	3	334	26	26	22	24	2.00
62012144--62012246	47	2.2	47	96	0	188	27	31	7	33	1.85
62023613--62023703	46	2.0	46	82	4	112	26	31	7	34	1.85
62023720--62023795	22	3.3	22	65	28	59	25	30	13	31	1.93
62023717--62023977	47	5.6	47	92	0	414	26	29	12	31	1.93
62023683--62024008	94	3.5	94	84	7	421	27	30	11	30	1.91
62023887--62023960	23	3.2	23	62	24	55	31	29	10	28	1.91
62023717--62024008	47	6.2	47	91	0	404	27	29	11	31	1.92
62024736--62024797	30	2.1	30	100	0	124	33	20	12	32	1.91
62026564--62026733	43	4.0	42	78	7	164	28	13	25	32	1.94
62029363--62029412	21	2.4	21	86	0	73	24	38	24	14	1.92
62031826--62031902	39	2.0	39	97	0	145	40	20	2	36	1.67
62035065--62035242	48	3.7	48	84	3	207	28	18	29	24	1.98
62037599--62037723	48	2.8	42	76	15	117	27	24	19	29	1.98
62037652--62037741	42	2.1	42	81	0	99	31	24	16	27	1.97
62044405--62044470	34	1.9	34	100	0	132	40	3	16	39	1.64
62044980--62045016	19	1.9	19	88	0	56	56	10	5	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62046032--62046086	28	2.0	28	81	0	65	25	27	27	20	1.99
62046232--62046274	22	2.0	22	85	0	59	34	20	23	20	1.96
62048534--62048827	147	2.0	147	100	0	588	40	19	13	27	1.89
62049738--62049802	22	3.0	22	79	0	76	35	24	23	16	1.95
62052098--62052193	42	2.3	42	83	1	111	31	26	18	23	1.98
62052121--62052202	42	1.9	43	87	2	121	34	28	19	18	1.95
62057103--62057301	27	7.4	27	84	0	229	35	18	19	26	1.95
62057103--62057299	54	3.7	54	84	0	252	36	17	19	26	1.94
62058018--62058099	27	3.0	27	75	15	69	21	24	19	34	1.97
62058040--62058099	27	2.3	26	85	2	75	21	23	20	35	1.96
62063475--62063624	27	5.6	27	80	3	167	34	16	22	26	1.95
62063474--62063622	54	2.8	54	86	1	192	34	16	22	26	1.95
62063475--62063624	81	1.9	81	82	2	194	34	16	22	26	1.95
62077077--62077119	23	1.9	24	86	13	65	46	23	4	25	1.71
62082886--62082961	31	2.5	31	84	0	98	47	14	21	17	1.82
62082916--62082983	25	2.7	25	77	4	75	44	11	22	22	1.85
62082865--62082933	6	11.3	6	76	14	70	52	13	17	17	1.75
62083104--62083209	27	4.0	26	86	6	131	37	19	23	18	1.94
62083368--62083418	22	2.3	22	86	0	66	35	21	23	19	1.96
62083774--62084534	161	4.7	161	89	2	1143	23	19	19	37	1.94
62083773--62084523	27	28.0	27	86	1	983	23	20	19	36	1.95
62084516--62084804	27	10.7	27	84	0	276	30	8	22	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62087172--62087356	40	4.7	40	78	6	189	25	21	27	25	2.00
62096780--62097049	40	6.8	40	94	0	450	26	21	28	22	1.99
62105251--62105522	40	6.8	40	93	1	454	26	21	29	23	1.99
62105243--62105522	122	2.3	122	93	1	467	26	21	28	23	1.99
62106687--62106803	40	3.0	40	86	3	157	25	22	27	24	2.00
62111110--62111148	19	2.1	18	85	4	51	20	15	28	35	1.93
62116278--62116312	18	1.9	18	88	0	52	14	42	28	14	1.84
62123426--62123460	17	2.0	18	94	5	63	22	48	17	11	1.79
62125729--62125790	26	2.3	27	80	2	63	51	24	0	24	1.48
62126636--62126796	56	2.9	55	85	5	191	33	24	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352