genome.fa.s11.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  339  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108650919--108650970	9	5.7	9	80	11	61	55	0	3	40	1.18
108656887--108656927	19	2.2	19	90	0	64	34	0	9	56	1.32
108658245--108658305	19	2.8	21	85	14	72	73	4	0	21	1.01
108661354--108661385	15	2.1	16	94	5	57	68	3	0	28	1.04
108662158--108662190	17	2.1	17	88	11	52	72	0	18	9	1.10
108689828--108689858	15	2.1	15	100	0	62	38	6	32	22	1.80
108690017--108690055	18	2.3	17	86	8	53	38	5	12	43	1.65
108690798--108690827	15	2.0	15	93	0	51	23	6	46	23	1.75
108694188--108694218	15	2.1	15	100	0	62	38	6	32	22	1.80
108694376--108694414	18	2.3	17	86	8	53	38	5	12	43	1.65
108697094--108697133	20	2.0	20	85	0	53	55	0	12	32	1.38
108703477--108703518	12	3.9	11	78	15	52	40	0	0	59	0.97
108721796--108721835	6	6.3	6	83	11	53	20	0	2	77	0.88
108721860--108721884	13	1.9	13	100	0	50	12	0	48	40	1.40
108721861--108721898	18	2.1	18	90	0	58	10	2	44	42	1.52
108723216--108723254	10	3.8	10	86	3	51	66	2	10	20	1.33
108728364--108728389	13	2.0	13	100	0	52	38	0	0	61	0.96
108740537--108740561	6	4.2	6	100	0	50	16	32	0	52	1.44
108745642--108745715	25	3.0	24	80	7	96	48	0	0	51	1.00
108745722--108745746	13	1.9	13	100	0	50	44	0	0	56	0.99
108745642--108745749	49	2.2	50	80	14	125	49	0	0	50	1.00
108745710--108745779	29	2.4	29	79	9	72	45	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108745754--108745787	18	1.9	18	88	5	52	41	0	0	58	0.98
108746303--108746339	2	18.5	2	100	0	74	51	0	0	48	1.00
108750824--108750887	22	2.9	22	77	13	60	62	4	0	32	1.16
108750861--108750892	16	2.1	16	94	5	57	56	6	0	37	1.25
108750941--108751382	113	3.9	113	90	6	645	52	16	1	30	1.52
108750950--108751382	220	1.9	222	89	6	680	52	15	1	30	1.52
108750892--108751454	220	2.6	209	82	12	675	52	15	1	30	1.49
108754451--108754493	16	2.5	17	85	11	61	18	11	4	65	1.42
108759058--108759116	27	2.2	27	96	3	111	37	13	18	30	1.90
108765032--108765092	9	6.4	9	75	17	61	44	0	1	54	1.10
108765032--108765092	21	3.2	19	80	13	72	44	0	1	54	1.10
108765112--108765155	20	2.2	20	96	4	81	31	0	6	61	1.22
108768643--108768683	21	2.0	21	90	0	64	19	29	21	29	1.98
108771873--108771922	25	2.0	24	92	3	82	52	2	16	30	1.55
108771924--108771953	6	5.0	6	91	0	51	33	30	0	36	1.58
108775108--108775243	67	2.0	68	90	4	213	18	33	13	34	1.89
108775443--108775467	4	6.2	4	100	0	50	24	0	0	76	0.80
108778786--108778874	44	2.0	44	97	0	169	52	11	7	28	1.64
108780668--108780706	21	1.9	20	84	5	51	28	2	28	41	1.69
108782211--108782286	39	1.9	39	91	0	125	26	13	30	30	1.94
108787436--108787519	28	3.0	29	70	20	79	54	1	1	42	1.15
108787426--108787553	56	2.3	56	78	10	136	57	2	1	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108789306--108789359	18	3.2	18	72	12	53	35	0	1	62	1.06
108795363--108795413	22	2.4	21	90	6	77	29	23	11	35	1.90
108803388--108803431	22	2.0	21	82	4	52	13	9	9	68	1.40
108804822--108805073	126	2.0	126	95	0	450	43	11	12	32	1.79
108814492--108814578	42	2.1	42	95	0	156	35	10	9	44	1.70
108819174--108819242	22	3.1	22	83	4	77	46	17	18	17	1.85
108825115--108825144	2	15.0	2	92	0	51	0	3	50	46	1.18
108825925--108826036	34	3.3	34	85	0	152	30	22	22	25	1.99
108828805--108828863	31	2.0	30	86	6	84	59	1	6	32	1.34
108836393--108836471	36	2.2	37	84	6	99	51	1	3	43	1.27
108838136--108838200	25	2.9	23	82	15	75	66	6	0	27	1.15
108838162--108838200	19	2.0	20	95	5	71	71	5	0	23	1.05
108838661--108838690	13	2.3	13	94	0	51	70	0	30	0	0.88
108844677--108845038	181	2.0	181	95	0	652	41	22	15	19	1.89
108845800--108845841	18	2.3	18	88	12	59	76	2	21	0	0.90
108846148--108847123	300	3.3	296	81	5	1051	36	14	9	40	1.78
108856488--108856551	32	2.1	30	85	11	85	56	12	6	25	1.59
108858044--108858068	8	3.1	8	100	0	50	24	24	24	28	2.00
108859951--108859992	12	3.5	12	87	6	50	73	0	26	0	0.83
108860690--108860769	39	2.0	39	82	2	97	36	7	16	40	1.77
108860982--108861088	45	2.4	45	90	6	164	20	18	19	41	1.91
108861072--108861106	18	1.9	18	88	0	52	17	25	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108862869--108862913	9	5.3	9	82	17	53	62	0	0	37	0.96
108862871--108862913	16	2.6	17	78	14	54	62	0	0	37	0.95
108864656--108864685	5	6.0	5	92	0	51	76	0	23	0	0.78
108866039--108866089	24	2.2	23	85	3	66	66	0	3	29	1.09
108866377--108866447	29	2.5	29	78	13	76	77	0	5	16	0.95
108866388--108866446	28	2.1	27	84	9	75	76	0	5	18	0.97
108866378--108866449	22	3.3	22	80	16	71	76	0	5	18	0.97
108866375--108866439	18	3.6	19	78	12	75	76	0	7	15	0.99
108877190--108877221	6	5.3	6	100	0	64	34	0	31	34	1.58
108878855--108878905	5	10.2	5	77	8	50	41	15	1	41	1.58
108879385--108879414	16	1.9	15	93	6	51	3	20	0	76	0.92
108880813--108880845	16	2.1	16	88	5	50	45	15	6	33	1.70
108890055--108890094	19	2.0	20	85	4	55	40	0	10	50	1.36
108892981--108893021	21	2.0	21	90	0	64	29	21	29	19	1.98
108894925--108894958	16	2.1	16	88	0	50	50	14	17	17	1.79
108896780--108896831	16	3.2	16	83	5	68	9	25	0	65	1.23
108902543--108902614	28	2.6	28	88	0	99	29	27	12	30	1.93
108907778--108907815	18	2.1	19	90	5	60	73	2	0	23	0.95
108910979--108911199	108	2.0	110	96	1	410	38	9	5	47	1.58
108928442--108928757	155	2.0	156	90	1	499	28	20	30	20	1.97
108931570--108931621	23	2.4	22	74	6	52	59	1	5	32	1.32
108938327--108938413	44	2.0	44	100	0	174	25	18	10	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108943256--108943352	42	2.3	43	85	3	133	32	25	16	24	1.96
108946893--108947132	75	3.2	75	89	1	367	32	23	17	26	1.97
108946963--108947132	35	4.5	37	70	21	122	32	22	17	27	1.96
108946904--108947105	35	5.5	35	70	20	153	33	23	17	26	1.96
108950185--108950244	30	2.0	30	96	0	111	18	36	8	36	1.81
108953019--108953067	26	2.0	24	84	8	62	65	0	0	34	0.93
108955420--108955462	19	2.1	21	91	8	72	37	9	18	34	1.83
108958541--108958565	12	2.1	12	100	0	50	76	0	24	0	0.80
108961058--108961104	9	5.9	8	76	18	53	87	0	10	2	0.63
108961055--108961106	16	3.4	15	84	10	70	86	0	9	3	0.69
108961055--108961105	21	2.4	22	83	3	68	88	0	9	1	0.60
108962102--108962578	87	5.5	87	85	6	660	26	15	27	30	1.96
108962054--108962678	262	2.4	262	94	0	1106	26	15	28	30	1.96
108962058--108963191	44	25.9	44	71	14	600	27	15	27	29	1.96
108962468--108962899	221	2.0	221	96	0	803	28	15	27	28	1.96
108962054--108963191	262	4.3	256	80	10	847	27	15	27	29	1.96
108962672--108963059	87	4.4	87	80	7	462	27	15	26	30	1.96
108962578--108962974	175	2.3	176	89	1	609	27	15	27	29	1.96
108962189--108963191	483	2.1	483	91	1	1609	27	15	27	29	1.96
108963244--108963743	44	11.1	44	71	10	203	31	16	25	27	1.96
108963244--108963599	134	2.6	134	86	1	471	31	16	23	28	1.96
108963586--108963785	45	4.5	45	85	1	258	33	15	27	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108963605--108963771	89	1.9	89	89	0	262	30	14	28	26	1.95
108966732--108966776	21	2.1	22	88	8	67	40	0	2	57	1.11
108966700--108966777	35	2.3	33	79	16	90	39	0	1	58	1.06
108966732--108966786	20	2.7	20	81	15	60	43	0	1	54	1.10
108966737--108966784	21	2.3	21	85	7	62	47	0	0	52	1.00
108966826--108966874	16	3.2	16	75	19	59	38	0	2	59	1.09
108966824--108966904	30	2.8	28	79	12	83	34	0	4	60	1.18
108966994--108967045	11	3.8	13	77	22	54	44	0	0	55	0.99
108966793--108967047	128	2.0	129	82	11	319	38	1	4	55	1.28
108967035--108967093	21	2.7	22	82	10	59	44	3	0	52	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352