genome.fa.s11.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  144  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46884836--46885020	54	3.4	54	82	0	208	35	20	8	36	1.82
46884849--46884979	27	4.9	27	86	0	172	30	19	8	41	1.80
46884957--46885287	27	12.2	27	73	8	181	39	20	9	30	1.84
46884856--46885005	81	1.9	81	79	0	174	33	17	8	40	1.80
46884970--46885203	27	8.7	27	77	5	199	41	20	8	29	1.83
46884970--46885178	80	2.6	82	83	3	246	40	21	9	29	1.84
46884966--46885286	54	5.9	54	76	6	231	40	19	9	30	1.83
46885307--46885380	27	2.7	27	76	12	71	39	18	17	24	1.92
46886165--46886258	25	3.8	25	92	1	154	25	25	23	25	2.00
46886165--46886271	25	4.4	24	90	3	135	28	23	23	25	2.00
46886477--46886586	31	3.5	31	84	9	152	29	18	24	28	1.98
46891327--46891484	43	3.7	42	71	10	133	27	17	25	29	1.98
46901521--46901978	39	11.7	39	85	1	565	21	22	27	28	1.99
46901521--46901929	157	2.6	156	86	1	559	21	22	27	28	1.99
46901519--46901969	196	2.3	196	92	0	733	21	22	26	28	1.99
46908498--46908822	140	2.3	142	76	8	315	22	29	20	28	1.98
46910444--46910654	56	3.8	56	90	0	332	29	17	21	31	1.96
46917129--46917332	56	3.6	56	90	2	302	29	16	23	31	1.96
46921900--46921946	24	2.0	24	83	8	60	25	25	19	29	1.98
46921920--46921971	25	2.1	25	82	3	61	25	21	21	32	1.98
46922019--46922058	21	1.9	21	84	0	53	37	15	7	40	1.75
46922095--46922143	25	2.0	25	87	0	71	24	14	22	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46932097--46932126	12	2.5	12	88	0	51	13	46	26	13	1.80
46933685--46933745	21	2.9	21	85	4	88	32	19	11	36	1.88
46933685--46933745	10	5.9	10	77	11	61	32	19	11	36	1.88
46936921--46936984	28	2.3	28	97	0	119	14	28	10	46	1.77
46938557--46938626	27	2.6	27	93	2	104	30	30	12	27	1.93
46938557--46938654	28	3.5	28	88	2	126	30	29	13	26	1.94
46943234--46943312	31	2.5	31	97	0	149	27	26	18	26	1.98
46943336--46943427	42	2.2	42	90	0	148	38	21	11	28	1.89
46943562--46943644	25	3.4	25	74	11	64	28	19	19	32	1.96
46944548--46944786	27	8.8	27	75	5	144	30	8	19	41	1.82
46944573--46944729	55	2.9	54	81	2	163	31	7	18	42	1.77
46944785--46944876	27	3.4	27	84	0	121	39	6	25	29	1.81
46944765--46944901	54	2.5	53	75	8	132	34	8	24	32	1.85
46950486--46950593	48	2.2	48	83	3	146	29	25	8	36	1.85
46964883--46965045	81	2.0	81	91	2	265	26	14	20	38	1.91
46968507--46968766	39	6.7	39	88	1	326	32	24	15	27	1.95
46976269--46976482	39	5.5	39	85	2	252	29	22	16	30	1.96
46986167--46986203	19	1.9	19	100	0	74	40	10	10	37	1.75
46989725--46989806	42	2.0	42	95	0	146	29	15	23	31	1.95
46991014--46991103	45	2.0	45	89	2	137	38	23	13	24	1.90
46998987--46999020	18	1.9	18	88	5	52	29	8	20	41	1.82
47001405--47001589	40	4.7	40	84	6	216	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47001405--47001589	79	2.3	80	80	8	198	25	28	21	24	1.99
47014419--47014481	29	2.2	29	100	0	126	17	25	11	46	1.81
47052140--47052311	93	1.8	93	96	0	317	27	29	21	20	1.98
47052133--47052308	46	3.8	46	79	12	216	28	29	21	20	1.98
47058752--47058923	93	1.8	93	96	0	317	27	29	21	20	1.98
47058745--47058920	46	3.8	46	79	12	216	28	29	21	20	1.98
47066034--47066258	49	4.5	49	83	2	261	26	17	26	29	1.97
47068667--47068718	27	2.0	26	88	3	77	17	25	21	36	1.94
47070455--47070496	21	2.0	21	90	0	66	23	23	19	33	1.97
47074431--47074602	93	1.8	93	93	0	299	21	22	28	27	1.99
47074435--47074609	46	3.8	46	77	13	187	21	22	28	28	1.99
47078912--47079087	46	3.8	46	79	14	209	21	20	28	29	1.98
47078909--47079079	93	1.8	93	93	2	299	21	21	28	28	1.98
47087495--47087535	21	1.9	22	85	5	57	46	19	4	29	1.71
47094685--47094809	48	2.7	47	83	10	136	25	23	23	28	2.00
47094705--47094809	48	2.2	48	91	0	165	25	24	21	27	2.00
47099797--47099840	20	2.2	20	95	0	79	31	15	25	27	1.96
47106939--47107107	45	3.9	43	81	9	168	26	28	19	25	1.99
47109758--47111095	672	2.0	672	94	0	2329	31	23	14	30	1.94
47119987--47120207	40	5.6	40	79	12	217	24	22	26	26	2.00
47119987--47120207	80	2.8	81	83	8	260	24	22	26	26	2.00
47122998--47123036	21	1.9	20	89	5	60	46	20	0	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47136574--47136611	15	2.5	15	83	16	51	0	18	0	81	0.69
47139713--47139771	30	2.0	30	83	6	75	42	10	10	37	1.73
47150983--47151195	94	2.3	94	81	5	225	24	30	16	29	1.96
47153434--47153487	23	2.5	23	82	8	60	61	5	0	33	1.19
47153698--47153743	15	2.9	15	90	6	65	67	0	6	26	1.15
47153659--47153778	44	2.8	44	80	13	124	62	0	8	29	1.24
47153708--47153817	15	7.7	15	71	19	76	64	0	7	27	1.26
47153711--47153805	29	3.3	28	77	21	83	63	0	8	28	1.24
47153750--47153794	21	2.3	20	81	11	58	64	0	6	28	1.19
47153708--47153826	44	2.8	43	75	12	118	63	1	7	26	1.30
47154835--47155523	85	8.1	85	88	2	947	20	22	21	36	1.95
47154835--47155523	171	4.0	169	88	2	943	20	22	21	36	1.95
47154982--47155472	42	11.5	43	63	12	152	18	22	21	36	1.95
47155770--47155898	64	2.0	65	89	4	199	34	17	18	29	1.94
47159404--47159633	124	1.8	125	82	2	293	29	14	18	37	1.91
47161917--47161957	20	2.0	20	100	0	82	39	14	4	41	1.67
47161975--47162014	19	2.1	19	86	9	55	75	5	5	15	1.15
47166073--47166528	47	9.6	47	96	0	750	33	8	29	29	1.86
47174612--47174643	14	2.3	14	100	0	64	50	18	12	18	1.78
47179867--47180044	27	6.6	27	80	3	115	29	28	15	26	1.96
47179867--47180044	54	3.3	55	80	10	204	29	28	15	26	1.96
47179888--47180043	82	1.9	81	85	3	215	28	27	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47182422--47182523	27	3.8	26	78	10	98	27	27	15	29	1.96
47186006--47186170	40	4.2	40	81	6	201	23	21	27	27	1.99
47185994--47186170	80	2.2	79	87	6	250	23	22	27	26	1.99
47364928--47364963	17	2.1	18	89	5	56	52	0	8	38	1.32
47365796--47365828	15	2.1	16	94	5	59	78	3	0	18	0.87
47368127--47368470	47	7.3	47	70	14	176	28	19	28	22	1.98
47368115--47368468	94	3.8	92	76	10	317	29	19	28	23	1.98
47375757--47376109	47	7.6	45	73	10	239	28	20	28	22	1.98
47375758--47376113	94	3.8	91	77	10	355	28	19	28	22	1.98
47384065--47384281	40	5.5	40	87	3	280	22	23	28	25	1.99
47392200--47392417	40	5.5	40	88	2	289	22	23	28	25	1.99
47394463--47394598	57	2.4	57	80	3	148	32	19	16	30	1.95
47401644--47401705	31	2.0	31	93	0	106	33	27	16	22	1.95
47417751--47417906	56	2.8	55	76	6	143	31	16	19	32	1.94
47420578--47420604	8	3.4	8	100	0	54	66	0	0	33	0.92
47422669--47422873	27	7.6	27	87	3	250	30	28	14	26	1.95
47430582--47430785	27	7.6	27	87	2	257	30	28	14	26	1.95
47435107--47435135	11	2.6	11	100	0	58	37	10	10	41	1.73
47440780--47440828	18	2.7	18	72	12	55	63	0	0	36	0.95
47450880--47450963	26	3.2	26	96	0	150	33	4	25	36	1.77
47452398--47452462	26	2.4	27	84	7	87	30	24	13	30	1.94
47452565--47452677	27	4.2	27	81	3	111	18	23	22	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47452563--47452677	54	2.1	54	85	3	151	18	23	22	35	1.95
47452739--47452778	19	2.0	22	85	14	59	17	2	47	32	1.61
47462686--47462955	47	5.7	50	75	15	218	27	19	28	24	1.99
47464649--47464673	12	2.1	12	100	0	50	24	8	24	44	1.80
47466816--47466879	18	3.6	18	78	0	74	32	14	14	39	1.85
47466798--47466915	36	3.3	36	82	0	128	34	16	12	36	1.86
47468891--47468994	52	2.0	52	100	0	208	32	23	11	32	1.90
47473177--47473277	39	2.6	39	93	0	166	40	21	24	12	1.89
47478413--47478496	28	3.2	28	65	25	83	23	16	29	29	1.96
47478311--47478553	49	4.9	49	85	2	315	25	18	26	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352