genome.fa.s11.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  143  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46552174--46552203	11	2.7	11	94	0	51	60	3	0	36	1.14
46558343--46558507	46	3.6	46	76	14	185	27	29	20	22	1.99
46558343--46558511	93	1.8	93	92	0	284	27	28	20	22	1.99
46561967--46562162	98	2.0	98	94	3	344	36	6	26	31	1.82
46561963--46562159	48	4.1	48	91	5	333	36	6	25	31	1.82
46562309--46562417	37	2.9	37	94	0	182	22	18	31	27	1.97
46564726--46565840	572	2.0	570	90	1	1784	32	17	16	33	1.93
46568335--46568386	24	2.2	24	100	0	104	15	40	32	11	1.83
46582498--46582530	12	2.6	13	85	9	50	9	45	0	45	1.35
46583598--46583662	28	2.3	28	86	0	94	33	26	7	32	1.85
46583768--46583857	27	3.2	27	79	7	101	18	22	24	34	1.96
46583778--46583868	27	3.2	28	78	4	76	20	24	20	34	1.97
46589410--46589443	18	1.9	17	88	5	50	26	0	20	52	1.46
46593005--46593167	43	3.8	43	72	12	129	25	15	26	31	1.96
46595481--46595776	40	7.5	40	87	5	381	25	26	22	25	2.00
46603601--46603889	39	7.5	40	88	7	404	24	27	22	25	2.00
46603601--46603889	116	2.5	115	89	5	424	24	27	22	25	2.00
46607308--46607436	51	2.5	52	90	6	201	27	26	14	31	1.95
46610067--46610243	40	4.4	40	82	4	207	25	27	21	24	1.99
46618003--46618153	40	3.8	40	86	3	214	27	29	21	22	1.99
46625445--46625573	48	2.7	48	87	0	186	23	17	30	28	1.97
46642298--46642695	47	8.5	47	90	3	615	29	29	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46645394--46645436	21	2.0	21	100	0	86	48	0	27	23	1.51
46646307--46646470	48	3.4	48	87	1	231	24	15	32	28	1.95
46646292--46646465	96	1.8	96	89	2	278	24	15	32	27	1.95
46646292--46646486	96	2.0	96	84	3	250	24	15	31	28	1.96
46651530--46651642	24	4.3	27	76	13	112	21	23	16	38	1.92
46651542--46651641	24	4.0	24	81	10	119	21	21	18	40	1.92
46651530--46651648	52	2.3	52	86	0	166	23	21	16	37	1.93
46653612--46653652	20	2.0	20	95	0	73	41	19	2	36	1.65
46653776--46653843	23	2.8	24	76	14	68	36	20	23	19	1.95
46653776--46653850	24	3.1	23	73	19	64	36	20	24	20	1.95
46656643--46656890	47	5.3	45	73	16	193	29	19	28	22	1.98
46656592--46656890	47	6.4	46	73	13	191	28	19	29	22	1.98
46656592--46656907	94	3.4	92	77	10	320	28	19	29	22	1.98
46656592--46656907	141	2.2	141	78	9	324	28	19	29	22	1.98
46662136--46662292	40	3.9	40	84	3	226	28	27	21	22	1.99
46670117--46670284	40	4.2	40	83	3	223	26	27	22	23	1.99
46675393--46675655	47	5.7	45	72	15	164	28	19	31	21	1.97
46681381--46681605	40	5.6	40	80	4	238	23	25	24	26	2.00
46684379--46684433	21	2.6	21	77	11	67	0	45	20	34	1.51
46684410--46684439	15	1.9	16	93	6	53	3	50	13	33	1.58
46684831--46684859	13	2.1	14	93	6	51	55	10	0	34	1.34
46688660--46688728	34	2.0	34	97	0	129	34	17	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46689993--46690325	9	38.1	9	70	8	127	35	1	16	45	1.57
46690111--46690173	33	1.9	33	86	0	90	33	3	14	49	1.59
46690022--46690341	139	2.3	140	90	2	493	36	1	15	45	1.55
46690248--46690315	33	2.1	33	88	0	100	32	1	11	54	1.46
46690177--46690341	85	1.9	88	86	3	237	36	1	15	46	1.53
46692442--46692497	27	2.0	28	86	3	78	25	19	39	16	1.91
46694115--46694286	46	3.7	45	75	14	172	30	26	19	22	1.98
46694120--46694290	93	1.8	93	91	0	279	30	27	19	22	1.98
46701572--46701646	31	2.4	31	88	0	114	28	25	16	30	1.96
46701670--46701761	42	2.2	42	90	0	139	33	21	15	29	1.94
46701906--46702055	26	5.8	26	92	0	248	25	23	24	26	2.00
46702856--46702935	27	3.0	27	81	3	99	21	26	20	32	1.97
46702978--46703230	27	9.3	27	77	6	170	32	9	20	38	1.84
46702978--46703206	83	2.8	82	77	9	241	31	10	20	38	1.85
46702956--46703215	81	3.2	79	72	13	222	30	10	18	40	1.85
46702978--46703230	54	4.6	54	75	7	206	32	9	20	38	1.84
46703208--46703412	27	7.6	27	88	3	225	42	8	20	28	1.81
46703006--46703257	81	3.1	80	72	6	202	33	7	19	38	1.81
46703209--46703411	81	2.5	80	83	3	255	42	7	20	29	1.80
46703425--46703541	54	2.2	54	84	3	146	35	9	16	39	1.81
46703425--46703541	27	4.3	26	84	6	128	35	9	16	39	1.81
46705780--46705854	31	2.4	31	90	0	123	28	26	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46705878--46705969	42	2.2	42	90	0	139	33	21	15	29	1.94
46706114--46706262	26	5.8	26	81	2	185	29	22	19	28	1.98
46706114--46706262	51	2.9	52	84	8	216	29	22	19	28	1.98
46707065--46707148	27	3.1	27	93	3	134	20	26	22	30	1.98
46707187--46707371	27	6.8	27	79	7	160	32	9	18	38	1.84
46707187--46707412	27	8.3	27	77	8	127	34	9	19	36	1.85
46707337--46707497	54	3.0	54	85	1	162	40	10	20	28	1.86
46707363--46707545	27	6.8	27	88	5	237	39	9	23	27	1.85
46707553--46707642	27	3.3	27	81	3	92	32	10	17	40	1.83
46709286--46709317	13	2.5	13	100	0	64	21	12	31	34	1.91
46723414--46723591	27	6.6	27	75	6	119	29	26	16	28	1.97
46723414--46723591	54	3.3	54	74	12	150	29	26	16	28	1.97
46731421--46731598	27	6.6	27	75	6	119	29	26	16	28	1.97
46731421--46731598	54	3.3	54	74	12	150	29	26	16	28	1.97
46738436--46738516	29	2.8	29	83	5	85	25	29	14	29	1.95
46738749--46738787	16	2.4	16	86	0	51	10	15	20	53	1.70
46745430--46745531	43	2.4	43	86	0	132	27	22	28	21	1.99
46749740--46749856	61	1.9	61	83	0	153	23	29	23	23	1.99
46751779--46752038	39	7.0	39	81	10	319	25	28	24	21	1.99
46755509--46755533	12	2.1	12	100	0	50	24	32	8	36	1.84
46757933--46758011	39	2.0	39	100	0	158	34	15	22	27	1.94
46763779--46763831	26	2.0	27	85	7	74	24	15	22	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46765317--46765374	26	2.2	26	93	0	98	36	24	5	34	1.78
46773136--46773176	20	2.0	20	95	0	73	39	17	4	39	1.71
46773384--46773447	24	2.7	24	71	20	62	37	18	20	23	1.94
46775198--46775243	24	1.9	24	95	0	83	30	23	15	30	1.95
46780371--46780408	20	1.9	20	94	0	67	39	5	18	36	1.73
46783522--46783598	40	1.9	40	94	0	136	37	6	11	44	1.67
46786461--46786509	24	2.0	24	85	14	66	34	0	6	59	1.22
46786893--46787000	26	4.2	26	91	0	180	31	7	25	36	1.83
46788612--46788812	27	7.2	27	79	10	219	16	23	23	35	1.95
46788612--46788812	54	3.6	54	85	9	278	16	23	23	35	1.95
46788665--46788830	87	1.9	86	84	8	221	17	24	22	36	1.95
46788752--46788830	27	3.0	26	88	7	97	17	25	21	35	1.95
46803170--46803232	29	2.2	29	100	0	126	17	25	11	46	1.81
46824122--46824263	27	5.3	27	83	3	146	45	19	13	21	1.84
46824122--46824265	53	2.7	53	86	2	180	45	19	13	21	1.84
46824255--46824389	27	5.0	27	80	4	146	23	15	21	39	1.92
46824716--46824762	18	2.6	18	83	6	60	25	19	6	48	1.72
46825872--46825958	45	1.9	45	92	0	147	36	27	11	24	1.90
46847420--46847449	11	2.7	11	100	0	60	26	6	26	40	1.81
46848590--46848663	29	2.6	29	86	4	96	25	31	16	27	1.96
46856591--46856664	29	2.6	29	89	4	105	25	29	16	28	1.97
46878059--46878190	27	4.9	27	85	0	156	30	19	7	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46878046--46878217	54	3.2	54	85	0	209	34	19	7	38	1.80
46878066--46878215	81	1.9	81	79	0	174	33	17	8	41	1.78
46878181--46878391	80	2.6	80	82	5	230	42	21	7	28	1.80
46878181--46878413	27	8.7	27	81	4	222	42	21	7	28	1.79
46878176--46878496	54	5.9	54	75	7	206	41	20	7	29	1.81
46878176--46878477	27	11.1	27	75	8	85	41	20	7	30	1.81
46878517--46878594	27	2.9	27	75	11	79	35	20	20	23	1.96
46881261--46881320	30	2.0	30	90	0	93	30	25	8	36	1.85
46882137--46882202	24	2.7	24	83	6	80	27	22	22	27	1.99
46882408--46882548	31	4.5	31	94	0	228	28	17	24	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352