genome.fa.s11.2.7.7.80.10.50.1000.335.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  335  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107470937--107470975	17	2.3	17	81	0	51	35	2	5	56	1.35
107470965--107470999	14	2.5	14	90	9	54	31	0	2	65	1.07
107475334--107475375	19	2.2	19	83	8	50	57	0	7	35	1.26
107475452--107475510	29	2.1	27	81	6	64	57	6	6	28	1.50
107484152--107484192	21	2.0	21	90	0	64	19	29	21	29	1.98
107487486--107487650	72	2.3	72	88	0	240	34	16	13	35	1.88
107496766--107496812	22	2.2	21	88	3	67	25	17	12	44	1.84
107498373--107498410	18	2.1	18	90	0	58	71	7	21	0	1.11
107498402--107498444	15	2.9	15	86	3	52	76	11	11	0	1.02
107498589--107498622	16	2.1	16	88	5	50	17	5	0	76	0.98
107500574--107500619	16	2.8	16	83	6	56	71	8	19	0	1.11
107500732--107500764	12	2.8	12	95	0	57	69	6	21	3	1.24
107501654--107501707	25	2.2	24	83	3	63	27	1	5	64	1.26
107501751--107501817	29	2.2	32	79	12	79	25	5	4	64	1.36
107501832--107501879	25	1.9	25	87	8	71	37	6	0	56	1.25
107514019--107514066	24	2.0	24	83	0	60	47	12	6	33	1.66
107522532--107522595	29	2.1	29	83	11	76	53	3	3	40	1.33
107522792--107522826	15	2.3	15	95	0	61	74	0	8	17	1.06
107522798--107522848	23	2.3	21	77	9	57	66	0	11	21	1.23
107522932--107523092	4	39.5	4	65	13	60	63	1	10	24	1.34
107522980--107523082	53	1.9	53	86	7	147	61	0	12	25	1.38
107522965--107523078	16	7.4	15	67	21	67	61	0	12	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107526615--107526694	32	2.5	32	81	4	90	61	5	7	26	1.44
107526610--107526692	35	2.5	32	80	7	96	61	4	7	26	1.42
107533597--107533748	76	2.0	76	98	0	295	38	9	13	38	1.77
107536127--107536174	26	1.9	24	87	8	69	41	8	0	50	1.33
107536370--107536655	141	2.0	141	94	0	500	29	11	25	33	1.91
107539021--107539069	25	2.0	24	88	4	71	32	0	0	67	0.91
107539024--107539067	15	2.9	15	83	6	54	29	0	0	70	0.88
107547343--107547370	14	2.0	14	100	0	56	35	7	0	57	1.26
107547476--107547513	19	1.9	21	84	10	53	50	5	0	44	1.24
107550148--107550295	72	2.1	72	83	2	181	36	17	15	30	1.91
107556893--107556931	20	2.0	20	100	0	78	20	12	15	51	1.76
107559179--107559318	39	3.6	39	92	1	219	37	23	25	12	1.91
107566623--107566665	14	3.1	14	96	3	79	53	11	0	34	1.37
107568472--107568525	27	2.0	27	88	0	81	42	0	11	46	1.39
107568478--107568534	29	2.0	27	90	6	87	40	0	12	47	1.41
107568976--107569044	20	3.3	21	75	11	61	57	1	4	36	1.27
107569223--107569259	15	2.7	14	84	15	51	43	0	2	54	1.14
107572157--107572306	40	3.8	40	81	2	169	26	18	19	36	1.94
107572656--107572702	22	2.2	21	88	3	67	53	27	2	17	1.55
107572771--107572818	14	3.4	14	74	5	51	50	25	0	25	1.50
107572772--107572848	29	3.3	21	69	26	57	49	23	1	25	1.58
107572778--107572825	14	3.4	14	79	2	60	47	27	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107573211--107573328	41	2.9	40	82	5	121	24	15	24	35	1.94
107573641--107573807	72	2.3	72	90	4	273	39	16	10	32	1.84
107575342--107575390	18	2.8	17	81	15	55	24	4	4	67	1.26
107581676--107581763	18	5.2	18	73	13	78	32	14	20	31	1.93
107582793--107582829	6	6.3	6	96	3	67	86	0	13	0	0.57
107583991--107584025	9	3.8	9	85	7	52	71	0	2	25	1.00
107584074--107584126	20	2.7	19	80	8	61	58	1	3	35	1.27
107584078--107584134	9	6.1	9	76	13	53	63	1	3	31	1.22
107593370--107593406	18	2.1	18	89	0	56	81	0	2	16	0.81
107593372--107593409	13	2.9	13	88	7	51	81	0	2	15	0.80
107594113--107594228	24	4.7	24	68	14	67	35	5	5	54	1.45
107594354--107594408	17	3.3	17	82	9	69	32	7	9	50	1.61
107594543--107594621	24	3.2	24	72	17	65	36	5	3	54	1.41
107594520--107594659	57	2.4	56	81	11	147	35	5	4	55	1.44
107594616--107594683	20	3.3	20	80	12	68	35	4	4	55	1.40
107594916--107594967	4	13.5	4	76	8	54	25	3	3	67	1.25
107594924--107594967	20	2.2	20	100	0	88	25	4	4	65	1.30
107594933--107594976	20	2.2	20	84	8	54	25	9	6	59	1.53
107602050--107602083	9	3.7	9	96	4	59	79	0	2	17	0.86
107603428--107603481	27	2.0	27	100	0	108	37	25	14	22	1.93
107611518--107611598	35	2.3	35	78	4	101	23	19	22	34	1.96
107615355--107615390	17	2.1	18	94	5	65	36	0	5	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107620977--107621009	17	1.9	17	88	11	50	48	0	0	51	1.00
107631277--107631317	21	2.0	21	81	18	50	31	19	26	21	1.97
107634423--107634479	21	2.7	21	81	5	62	26	3	3	66	1.24
107634817--107634857	14	2.9	14	77	0	55	24	7	29	39	1.82
107637523--107637563	14	2.9	14	77	0	55	21	9	31	36	1.86
107637799--107638367	281	2.0	281	97	0	1075	27	19	15	37	1.92
107642181--107642442	132	2.0	132	89	1	400	28	18	17	34	1.94
107642188--107642498	132	2.4	131	84	4	358	29	19	18	32	1.96
107644415--107644525	36	3.3	36	65	23	105	18	3	29	47	1.66
107644419--107644558	64	2.2	64	90	0	217	22	3	29	45	1.69
107646652--107646681	13	2.3	13	94	0	51	33	0	16	50	1.46
107649121--107649145	13	1.9	13	100	0	50	40	4	0	56	1.18
107653134--107653190	18	3.2	18	82	0	69	31	19	14	35	1.91
107653140--107653212	18	4.1	18	78	3	67	31	17	15	35	1.91
107657044--107657072	12	2.4	12	100	0	58	37	27	17	17	1.92
107659645--107659688	23	1.9	23	85	0	61	43	13	18	25	1.86
107660624--107660673	21	2.4	20	81	15	57	20	0	12	68	1.21
107681071--107681118	20	2.5	20	86	3	62	64	2	6	27	1.28
107681142--107681171	15	2.0	15	93	0	51	40	10	0	50	1.36
107683273--107683320	15	2.9	17	85	14	66	20	2	0	77	0.88
107687540--107687633	47	2.0	47	100	0	188	27	10	17	44	1.81
107698059--107698103	4	10.8	4	86	9	54	66	0	2	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107705384--107705425	20	2.1	20	95	0	75	30	14	2	52	1.54
107724025--107724065	21	2.0	21	90	0	64	19	29	21	29	1.98
107726874--107726970	43	2.4	41	91	8	155	37	16	17	28	1.92
107726889--107726982	43	2.2	43	92	1	154	39	19	14	26	1.90
107730039--107730141	54	1.9	54	84	4	136	35	17	21	25	1.95
107735476--107735561	19	4.6	19	94	5	158	37	11	13	37	1.82
107735480--107735561	36	2.2	37	93	6	148	36	12	14	36	1.84
107740591--107740647	7	8.0	7	81	14	64	82	0	14	3	0.80
107740580--107740647	21	3.2	20	82	10	82	82	0	14	2	0.79
107740580--107740647	22	3.3	19	79	16	73	82	0	14	2	0.79
107740591--107740647	15	4.0	14	80	14	64	82	0	14	3	0.80
107740582--107740647	7	8.8	8	70	12	50	81	0	15	3	0.80
107741597--107741990	84	4.6	84	87	3	511	33	22	20	23	1.97
107741597--107741990	171	2.3	169	86	3	513	33	22	20	23	1.97
107742031--107742544	44	11.7	44	75	12	380	29	14	26	28	1.95
107741990--107742500	176	2.9	175	89	1	736	29	15	26	29	1.96
107742020--107742544	132	4.0	130	73	13	444	29	14	26	29	1.95
107742691--107742875	44	4.2	45	75	9	182	29	16	25	28	1.97
107742597--107742875	134	2.1	134	89	0	423	31	16	22	28	1.96
107742637--107743043	134	3.0	132	80	5	329	31	16	24	27	1.96
107742956--107743088	45	3.0	45	88	2	187	31	12	28	27	1.93
107743439--107743535	19	5.1	19	92	7	162	38	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107743443--107743535	36	2.5	37	91	8	152	37	10	16	35	1.83
107745225--107745424	43	4.6	43	87	1	249	28	24	20	27	1.99
107751452--107751510	9	6.6	9	86	0	82	28	1	23	45	1.63
107751453--107751510	27	2.1	27	93	0	98	29	1	22	46	1.62
107751509--107752183	241	2.8	241	95	0	1226	33	15	17	33	1.91
107752208--107752274	33	2.0	33	94	0	116	44	16	23	14	1.85
107754868--107754923	25	2.2	25	80	0	67	35	10	41	12	1.78
107756928--107756965	18	2.1	18	90	5	58	47	2	42	7	1.46
107757171--107757227	22	2.7	20	77	22	62	33	1	1	63	1.15
107757579--107757697	7	16.7	7	78	3	67	45	32	0	21	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352